RNA id: XM_039810140.1


Basic Information

Item Value
RNA id XM_039810140.1
length 2432
RNA type mRNA
GC content 0.55
exon number 9
gene id scfd2
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38719919 ~ 38842671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTATGCTGCGACGGGTGATTGCCACGTCACCTTCAAGAGACTCTTGTGTTTTGTTCTGGAGCTACTTTAGCTGAAATTTCTGATGAGTCTTTAATTTCATAGCTTTTAGCAGACACTGACAATTGGCAAAATGCTGACGACGGAGAGTTTTACGCACTTTCCGGTTCAGATGTGGGAAAAGGTGCTGTCGAAGGTAAAGAAAGCGGTTGTTTTTATGGATGACAAGTGTGCAGAAGCTCTCCACTGGTGCGGAGGTGCCGCCGTCCTGCTGGAGGCTGGAGCCAGGAACTTGAAGGAGTTTTCGAGCTTCGAAGCCTGCGCTGTGAACGAACCGAAAGCCGTATTCGTGGTGAGCACTTTGTTGAAGGGCAGAACAGTGGACGTCATTAAAGACATCATATCCCTCAGCCACTTCCAGTACTGTGTCGTCTTCACCACCGTCGCTCACTCCGTGCACCTGCTCGCCAACAATGTCACCACAGAAATGGAAGGGAGCCCCGTGTTCGAGCAGTTCGAAGAGAAGCTGTGCGAGTGGATGGGGAACATGAACTACACGGCTGAAGTCTTGCATGTCCCAGTGGTCTTCGCCCCCGTGTCCCAGCAGCTTCTCCTCACACCCGCTTTTGCACACCTGTTTCCCCTGCTGTCACCTGACCTGGAGTCCCTAAATGCAAAACGTCCAGAGAAGAAGCGATTTGGAAGCCTGGTGGACGTAGACGTGCACTCTCTCCCTGTTGGACTGCAGCTTGAAATCAAATCCTTGGCTTCGGCATTAAATTCCCTGTTTGAAGCTACAGGCACCAGGGAAGAGAGTTTTGCTGTGGGTCCCATGAGCCGCATCATAGCAGGGGAACTGGCCAATCACCCTCAAGCGAAAAACAGAAGGAAGATAGCCCCGAATAAAGCATCCATCATTTTTGTGGACCGAACAATGGATCTTACAGGAGCTGTTGGTCACCATGGCGACAACCTGGTGGAGAAGATTCTGACTGTGCTCAAACATTTACCTGGCCATGTGACGGACGTACAAGTGGACATGCTGGAACTCACAAGTGTGCAGCGAACCCCCCACTCCCAGAGCACCCTGGCCCCCGGCTGTCTCGCACAGACCCAGTCACCTGCAGCCCAGTCTCTGTGGGAGGCCATGCTGACCAATAAACATAAAGAGGGGGTGATAGAGGTCCGTCGGCAACTAGTGGAAACAGCCAGTAAGGAGAAACTGCCAATCAAGATGAGCATGGGCCGCGTGACCCCAGAGCAGCTGTGCTCCTACATGCAGCTGTTCCGGAGCAGTTGGGGGGCGCTAGAGAGTCACTGCGGGGTGCTCCAGCTGGGCCTGGCCACGGCCCAGACACTCGGCCACCCCAGCCTGCCCCGCTGGGATGCCTGCCTGGCCTTCGagaggctgctgctgcagGCTCTTGGAGACTCTGATTTCCCCGTTGTGCTGAGGCAGCTGCTGCCCTTGATGAAGCCCCGCGGAGGCGAGGACAGCACCCTGGGGTGGAGGTCCAGGGAGGATGAATGCGGACCTGATGAGCTGATCCTCCTGCTGGTGTACCTGTACTCCCTGGCTGACGAGGCGCAGCCCGCAGACCAGGATACCCAGGGCACGctggagaagctggagagggaGCTGATCGGAGCGCTCACCCTGGTCATCACCCGAGAGACAGAACTCAGCCCCTTGCTCCAGAAACTCACCGGTTGTGCGAACCCAGAGGAGCTGACCACAGAGCGAGCCCATGCCACGGTGGAGGGGATGTTCAAGACCCTCCGAGGTTTGAGCCACACCAGAGACCACCTCAAGCAGCTGCGCTCGGTCTACACCCCCAGCGATGGAGTTCACCAGGCGACCTATCGTCCTTTCCTGCGGCAGATCCTGGAGGAAGTCTTCCACCCTGAAAGACTTGAATGTCCCGACATCGAGCACATGTCTGGAGGCCTCACGGACCTGCTCAAGACCGGCTTCAGCATGTTCATGAAGGTGAGTCGTCCACATCCCAGCGACAaccctctgctcttcctcttcctggTTGGTGGAGTCACGCCCTCTGAGCTGCGGCTCATCAAAGAGATCGTTAGCACGGACAAACCCGGGACTCAGGTGATGGTTTTGTCCACCAGATTACTGAGGCCCACGGATATTCCCCAGCTGCTCTTCACCACCCAAAGACTGCTGCCTGATATCGGTATCTGAAGGGCCGTCACGTGGAaaacgcacgcatgcacacgacAAGTGGGAGGACACGTGTGCCGCAGACGCCTTAACACCTCACCAGGTGTGAATCAAGCTTCAGTTAATGAGAATCTCTGGCAAAAGCTGCGAGCGGAAGTCAAGGAAACCAAATGAAGCAACATTCCTCTCCTGTTTATGTCTGTTTTGTccgaattaattaaaaagtaaacTGTAAATTAATTATATGAAAGTA

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640169.1 lncRNA upstream 167615 38534565 ~ 38552304 (+) True LOC120564886
TU136376 lncRNA upstream 168716 38550992 ~ 38551203 (+) False LOC120564886
TU136362 lncRNA upstream 205088 38514372 ~ 38514831 (+) True G101245
TU136347 lncRNA upstream 256340 38460674 ~ 38463579 (+) True G101232
TU136322 lncRNA upstream 346944 38372564 ~ 38372975 (+) True G101211
TU136400 lncRNA downstream 2613 38845284 ~ 38847544 (+) True G101278
XR_005640276.1 lncRNA downstream 13233 38855904 ~ 38858082 (+) True LOC120565661
TU136418 lncRNA downstream 29264 38871935 ~ 38872178 (+) True G101289
XR_005640312.1 lncRNA downstream 93480 38936151 ~ 38943212 (+) True LOC120565971
TU136523 lncRNA downstream 174040 39016711 ~ 39017673 (+) True G101365
XM_039810135.1 mRNA upstream 38523 38636809 ~ 38681396 (+) False lnx1
XM_039810137.1 mRNA upstream 38523 38636809 ~ 38681396 (+) False lnx1
XM_039810136.1 mRNA upstream 38523 38636845 ~ 38681396 (+) False lnx1
XM_039810138.1 mRNA upstream 38523 38647720 ~ 38681396 (+) True lnx1
XM_039810139.1 mRNA upstream 38523 38647720 ~ 38681396 (+) False lnx1
XM_039811582.1 mRNA downstream 23764 38866435 ~ 38880577 (+) True usp46
XM_039812003.1 mRNA downstream 59162 38901833 ~ 38907367 (+) True sgcb
XM_039810205.1 mRNA downstream 64915 38907586 ~ 38921011 (+) True LOC120564938
XM_039810206.1 mRNA downstream 108899 38951570 ~ 39014780 (+) True fryl
XM_039810727.1 mRNA downstream 232626 39075297 ~ 39130840 (+) True palld
TU135875 other upstream 1229847 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 1587614 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2021050 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 2185380 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 34540 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 617775 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 718451 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1672422 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 2382420 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile