RNA id: XM_039810148.1


Basic Information

Item Value
RNA id XM_039810148.1
length 2066
RNA type mRNA
GC content 0.47
exon number 7
gene id ephx4
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30245804 ~ 30261307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAGTGGCTTATTGCTTGATTTCGGACTTGCCTTGTATCGTCAACAGCACCGTCTCCTGCTAAACAACCACTCCTGTCACACGCAAGCGTGAAATCTGACGTGATGCTCTTGCCACCGTCCCGTTCAACCGTTTGTTGGGAACCTCCCTTCAGACAGTCGTGCGTATGCGCTGGTAACGACACAACCGCATTGTCAGAGCAGTATTCAAACTGAGCCGAGCGATTACCAGAAAGAAACCAATAGGTAACTTGATCTGGATTGATATCCTGCGGCAATGTAAAGATGGCGAGAGTGCTTCACAACTTGCTGTTATTTCTAATCAGACTTGCGCTGAAAATTCGAGTTTTGGGGTATTGGTCATTGATATACGGTTATTGTGCTCTTTGCACCACCGTAGCCCTGCTGAAACTTTGGTGGAACATCATCTTAAGGCCGACAACAACCTTCCAATGGGGGGTTCGTGAAACTCCTCCGGCTTGTCTGAATGACACGTCCTTGGGAACCCACTGTTATGTTAGGATCAAGGAATCTGGCCTTAGGTTTCACTATGTTGCTgctggagagagaggaaagccGCTCATGCTGTTTTTACACGGCTTCCCTGAGTTCTGGTTCTCCTGGCGCTACCAGCTACGCGAGTTTAAGAGTGAATTCCGTGTGGTGGCCATCGACATGCGGGGCTATGGGGAGTCCGACTTGCCGCTCTCCACTGAAAGTTATAACTTCGACAACCTGGTTACAGATGTCAAGGATATTGTGGAGTACCTAGGATACAACAGATGTTGCCTTGTTGGCCACGACTGGGGTGGGACCATAGCATGGCTGTTCGCCATTCACTACCCAGAGATGGTGACAAAACTCATCGTCCTAAACAGCCCCCATCCTTCTGTGTTCTCAgATTACGCGCTGCGTCACCCGAGCCAGCTGCTGAAATCCagtcatttcttcttcttccaacTGCCCCGCTTCCCGGAGCTCATGCTCTCCATCAATGATTTCAAGGCTCTGAAGGCCTTGTTCACCAGCCGCAGCACAGGGATCGGAAGGAAAGGCCGATGGCTCACTGCAGAGGACTTGGAGGCCTATCTGTATGCACTCTCACAGCCGGGAGCTCTGACTGGAGCCCTCAACTATTACAGGAATGTCTTCAGCTCCCTCCCCCTGAGCCAAAATCATGTCAGATCAccggtgctgctgctgtggggTGAGCGGGATGCCTTCTTGGAGCAGGAAATGGCAGAGGCATGTCGCCTCTACATCCGGAATCATTTCCGTCTCAACATCATTTCTGGGGCCAGTCATTGGCTGCAGCAGGACCAACCTGATATTGTGAACACCCTCATATGGACCTTCCTCAAGGAGGGCGAGGGACGCAAAAGCTACAGGAACTAAATCCACAGCGaggcctcctccagccctccCCTTGTCCTTCTTGCTTGCCACACCTGGAAGCCTGGAATATGCCTGTGATACCAAGCAACATAGTAATAATGCAATCATTCTTTAAatctttcaaatattttttaaagaagtCAGCAGTAAAGGAAAGAATCAAAGCACACTTCACTGGAGAGGACACAAAGCAGTATGTTTGACACATATTCAAGATGTTTTTTGCACATGACATCCGCCTTAAAGTTTGTCAGTTACAGCATTACAAATGTTTGGCAAAATCTCCTTGTGACTTGTATTGTGTGGTGCCTTTTTACTTTCGAGTAAAGATTTCCTGAGAGATTGGGATGTGGCGTTGTCTGCTATACTTATATGTATCACTGGGTCGCTCCACTCTTCTTTGGGCACAGTCCTTTGGGAGCCATAACTCTCCAACTCCCTTTATCAGGTAGTGTTGTCTAaaggagttttctttttttgtatttttttcctcaGAAATACTCAAATGTAGAGAATGTTGTTATTATGATCTTCATGTATATAAATGTCAGTGATGGTTGACTATTGTACTATTTTGTATCTATTCCTACACGCTGCATTTTGGAATTCACTGAGCCAGGTCTACACCAtttgattttataaataaactaaGTGTCAATCTGTTGGACTACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K22369 EPHX4; epoxide hydrolase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134013 lncRNA upstream 53964 30185707 ~ 30191840 (+) True G99368
TU134001 lncRNA upstream 204909 30039842 ~ 30040895 (+) True G99356
TU133977 lncRNA upstream 367683 29877872 ~ 29878121 (+) True G99338
TU133968 lncRNA upstream 470724 29774317 ~ 29775080 (+) True G99329
TU133966 lncRNA upstream 485438 29760043 ~ 29760366 (+) True G99327
TU134042 lncRNA downstream 25757 30287064 ~ 30288117 (+) True G99382
TU134036 lncRNA downstream 83022 30344329 ~ 30345174 (+) False G99379
TU134066 lncRNA downstream 127514 30388821 ~ 30389639 (+) True G99406
TU134141 lncRNA downstream 201253 30462560 ~ 30463389 (+) True G99461
TU134171 lncRNA downstream 260338 30521645 ~ 30522066 (+) True G99488
XM_039812340.1 mRNA upstream 886 30201532 ~ 30244918 (+) False brdt
XM_039812341.1 mRNA upstream 886 30202151 ~ 30244918 (+) False brdt
XM_039812338.1 mRNA upstream 886 30202205 ~ 30244918 (+) True brdt
XM_039812337.1 mRNA upstream 886 30202205 ~ 30244918 (+) False brdt
XM_039812342.1 mRNA upstream 886 30202205 ~ 30244918 (+) False brdt
XM_039810386.1 mRNA downstream 1670 30262977 ~ 30311025 (+) False btbd8
XM_039810388.1 mRNA downstream 1704 30263011 ~ 30311025 (+) False btbd8
XM_039810389.1 mRNA downstream 1705 30263012 ~ 30311025 (+) True btbd8
XM_039810390.1 mRNA downstream 21638 30282945 ~ 30311025 (+) False btbd8
XM_039810391.1 mRNA downstream 21640 30282947 ~ 30311025 (+) False btbd8
TU133929 other upstream 580714 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1471294 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2099479 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2161417 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 3450065 26792687 ~ 26795739 (+) False micos13
TU134127 other downstream 166196 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 549211 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1361391 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1368509 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1372258 31633565 ~ 31643446 (+) False LOC120564930

Expression Profile