RNA id: XM_039810190.1


Basic Information

Item Value
RNA id XM_039810190.1
length 900
RNA type mRNA
GC content 0.53
exon number 7
gene id org
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26050911 ~ 26053621 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGacggtgcacttctacacagccatcgAGTCCATCCTCCATTCCTCCATCACCAtgcatctgCGGCAACTTCGGGGTACATTTTACCCTCCAGAAGCAGCCCACCCTGTAGTCCTTCAGTTTCTCTTCCTCATCGTAAACCGGCACCAGGTTTTGACCCGCAGCAGGATGGCTTGTGAAATCTGCAGAGACACCGAGCTGGAGCAGGCCGAAAATACTGAGGACCGCGTTGTAAAGAGAGGTAGTGTGTTTCGCCCCATTCTGCGCGGACTCTTCTGGCCCTTCGGCATTGTGGTGCGCACATACCGCGGGTTTTGGTGGCTGTTGGGCTACCGGCAGCCACTGGAGATCGCCGTTGTCAGTCCCGCTGTGTCCAGTCCCGTACGCCATAGCCTCGCAGGCCGCAAGCGCCTGCACAGGTTCACCCGCCTACTGCTGTCCATCCTGCCCCGCTGGGTGCAGAGCGCCATGGGCTACCCAGTGTCCACCAGCATTGGGAGATCCCTCTCACCAGAGATCCGAGTCTCTCCAACTAAACCTTGTGGAAAGGGCAGCAAGAGAAAGCAGGATGAGTTGGACGAGGATGATGAGGAAGACGGTCAGACCTGGGTGGAGGCACTCAATCAGGAGCTCGATGACGATGAAAGCCCAGATCAGGATCCTGACTATGAGCCCAGTACTATAGAGACTGAGAGTGAAGAGTACTGCTCACACAACAGCACGGAAAGCGACCTTGAAGTTCAGGAGAATATTGTGGTCATTGAAGATGTGAACACGGGTGTCGGGCTGGCCCCTCCATCTGAAGTCTCTTGTCCTGATGTTTTGTCATATTGACAATGTTGTAgtatttcagtgtttttgtatctttatatattcaataaatgttgtctttttccTTGA

Function

GO:

id name namespace
GO:0005938 cell cortex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132705 lncRNA upstream 11064 26034761 ~ 26039847 (+) False oaz1a
TU132643 lncRNA upstream 125861 25884516 ~ 25925050 (+) True G98312
XR_005640280.1 lncRNA upstream 213164 25786331 ~ 25837747 (+) True LOC120565749
TU132636 lncRNA upstream 213531 25786325 ~ 25837380 (+) False LOC120565749
TU132603 lncRNA upstream 310362 25739131 ~ 25740549 (+) True G98280
TU132719 lncRNA downstream 81616 26135237 ~ 26136630 (+) True G98363
TU132720 lncRNA downstream 81656 26135277 ~ 26136630 (+) False G98363
TU132754 lncRNA downstream 138247 26191868 ~ 26194089 (+) True G98384
TU132804 lncRNA downstream 238479 26292100 ~ 26292440 (+) False zbtb7a
TU132802 lncRNA downstream 240918 26294539 ~ 26294993 (+) False zbtb7a
XM_039810881.1 mRNA upstream 11045 26034751 ~ 26039866 (+) True oaz1a
XM_039810879.1 mRNA upstream 19848 26027275 ~ 26031063 (+) True amh
XM_039810694.1 mRNA upstream 31540 25991506 ~ 26019371 (+) False dot1l
XM_039812390.1 mRNA downstream 44164 26097785 ~ 26135163 (+) True lingo3a
XM_039812389.1 mRNA downstream 44760 26098381 ~ 26135163 (+) False lingo3a
XM_039811849.1 mRNA downstream 90266 26143887 ~ 26189922 (+) True atp8b3
XM_039811850.1 mRNA downstream 120840 26174461 ~ 26189922 (+) False atp8b3
XM_039811431.1 mRNA downstream 190675 26244296 ~ 26257447 (+) True pias4a
XR_005640198.1 other upstream 31540 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 318734 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 503822 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1177037 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 739066 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1974351 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 2083648 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2718767 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3610012 29663633 ~ 29665090 (+) True G99297

Expression Profile