RNA id: XM_039810195.1


Basic Information

Item Value
RNA id XM_039810195.1
length 1398
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120564926
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28521773 ~ 28523624 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCTTCGAGGAAGACCGGGATTGTTTGTGCAGTTAGAGGGTGTCATAATAACTGGTACAAAAGAAAACTTTACTTGGAGcaggagtgttttaatcacCGAACGCGTATGAGAGCTGAATGTGGATGCGATGCGCCCTTCGACCTTTACCCGCCGCCGAAGAATGAGGAATCCCTTCGCCTGTGGTTAAAAGCTTTAAATTTGAAGAAACCACCAAAGCAACCgtatgtttgttcttttcatttcgtGAACACAAGACCTACAGAAGACCACCCGATACCAGAAAAGTGGCTGGGCTACGAAGTCCCAATAAAAACTCCAAGGAGACGTGTCAGGAGGTTAGCAGACACAGATGACAGCCACTGTGTTGAGGAAGCTGACCAGGCCGTTCCACAGTCAGAGTCACCTACGCATAAAGATGCTGACACTCAGTGGGAGGTTCAGGCACTGATGGATCACACCTACATATTAGGACAAAAGAAGAATCATGTATGCGACAGAGAAATACAATGTGGTGGAGAAGAACCCCTTGCCCATGCCATCCTGAAAAATGACACTAGCTGTGTGTTGTACACAGGCCTTTCTCTCAGTGTCTTTTTTGATCATGTTAAATATCTGGAACAGTTCTATAAAGCAAACTTTAAGATGCACGTAATGGATCAAATATTGATGACCATGATGAAACTTACGTTGAATCTACTCCAGGGTGATCTTGCAGAACGCTTTGCTGTGTCCCAGGGGTTAGTGAGCAGGATCCTCTCCTACTGGATAGACACAATGGAGGAGCACATGAGAATCTACATTCCTTGGCTGCCACGGGAGACAATCCGGAGCACAATGCCTCAGTGCTTCAGGGAGAAGTTCCCCAACATCCCCTGCATCATTGACTGCACTGAGACCACCCTGCAGAAACCACACAACCTTGACTCCAGAGGAGAGTCATACAGCCATTATTATTCCAGCAATACTATAAAGTATTTAGTTGCTATTGCCCCGTGTGGGCTTGTTATGTTCATTTCTCCTGCTTATGGAGGCAGGTGTAGTGACAAGTTCATCACTCAGGAGTCTGGCTTCCTGGAGTATCTTCATCCCGGCGATGAAGTGATGGCAGACAGAGGCTTTACCATCAGAGATCTGCTGTTTGAGAGAAAGGTTAACCTTGTTCTACCAGCGTTCACTCATAAAGGAGGGCAGTTGTCTGATGAGGATGTAACTGCCACAAATAGGATTGCAAATGTGCGCATACATGTGGAAAGGGTTATCAGGAGGCTCAAAGTGTTCAAAATAATCTCCCAGACTGTACCCATCAACTTGGCACACAAAATGGACAAAATCCTCAGAATCTGTGCAGCCCTTGTAAACATGCAGGGGGAAATCATCCATGAGGATGCTGATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640191.1 lncRNA upstream 61563 28456993 ~ 28460210 (+) True LOC120565132
TU133553 lncRNA upstream 61607 28449543 ~ 28460166 (+) False LOC120565132
TU133552 lncRNA upstream 61607 28456993 ~ 28460166 (+) False LOC120565132
TU133530 lncRNA upstream 202885 28312594 ~ 28318888 (+) True G98972
TU133277 lncRNA upstream 639462 27879317 ~ 27882311 (+) True G98770
TU133572 lncRNA downstream 46024 28569648 ~ 28570858 (+) True G99007
TU133704 lncRNA downstream 164258 28687882 ~ 28688118 (+) True G99108
TU133740 lncRNA downstream 336109 28859733 ~ 28865480 (+) False ralgps2
TU133794 lncRNA downstream 446863 28970487 ~ 28972086 (+) True G99189
XR_005640343.1 lncRNA downstream 468604 28992228 ~ 28992610 (+) True LOC120566147
XM_039810541.1 mRNA upstream 142742 28373583 ~ 28379031 (+) True LOC120565126
XM_039810542.1 mRNA upstream 168017 28346415 ~ 28353756 (+) True LOC120565127
XM_039811434.1 mRNA upstream 252134 28261056 ~ 28269639 (+) False serbp1a
XM_039810196.1 mRNA downstream 29006 28552630 ~ 28565249 (+) True LOC120564927
XM_039810543.1 mRNA downstream 53968 28577592 ~ 28585350 (+) True si:dkey-183n20.15
XM_039810544.1 mRNA downstream 53968 28577592 ~ 28585350 (+) False si:dkey-183n20.15
XM_039810759.1 mRNA downstream 116122 28639746 ~ 28649744 (+) True LOC120565214
XM_039810760.1 mRNA downstream 116122 28639746 ~ 28649744 (+) False LOC120565214
XR_005640167.1 other upstream 375448 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 437386 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 1726034 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2502402 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2789596 25730258 ~ 25732177 (+) False slc35a3a
TU133723 other downstream 248764 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1140009 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 1903879 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 2286894 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 3099074 31622698 ~ 31625796 (+) True G99791

Expression Profile