RNA id: XM_039810209.1


Basic Information

Item Value
RNA id XM_039810209.1
length 4072
RNA type mRNA
GC content 0.54
exon number 14
gene id LOC120564941
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39516873 ~ 39544466 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAACCTCGGCATCCTTTCCCACGTTGGATCATTTCAGCTCCGTTAAACCAGAGAGTCACCGGAGCAGAGCTGCGAACACACGGTGATCCTGTGCAGCATGTGTACTGCATGTGAGAAAAGAAGGCGAAATGAAGACTCACTCTGGGGGAGAGGAAACCTGAAGCAGGAGGAGACGCACAGTATAAGAAAACATGATGGGTCATCATGAAAACCTGCATCTGATCAGCCATTCATCAGTTATTCTTTGAAACAAACTGTTCAACTTAGCAATGGCAGGACATATtgtgcttctttttcttttactctGTAAAGGGGAAAGAAAGGGCATTTCAGTGGCTGTTGGCCTTTCAGAGGAAGGTCAGGATTTGCATGTAATATCCAGCAAAAGACAATTGAGCATTGACAACTTTTTTGGTAGTTTCAAAGAATTGGAGAGCCAGCTTCAGAATGGAAAAAATGATCTAACAACCCTGCCAAATGTGGCTTTTAgacaaaatgacagaaacccTAATGATTTTGACTTTAGGGGTAATATAGCAAGGCAACCAGTCATACTTAAACATCCCGAATCTACTGCTAAATCCCTATCAACTAAACATAGCCCTGAACTCACTATGAACCGCAAGAAAATAAGCTATTTGACTAATGGAGAGGTTGAAGGTGTAATTTATGCTCACAGTCAAGTGCAGAGTTCAGGCGAGGAGTACGCTCTCCAGCCTAAGCTCCATTTGGAGACAGGTGTCGGTGACGTTCTGCCTGAGAGGACACGGAGCCGCACTAAATGGGTCATGGAGTCAGAAGACGGTCGGTCGGAACCGTACCTGCCACGAGCGGAGCCTCGCTCTCGATGCCGGAGGAGCTGGCTCTGGAACCAGTTCTTTGTGATTGAGGAGTACAGAGGGCCCGAGCCTGTGCTCATTGGACGGctgcaCACAGATATGGACAGAGGAGACGGCCACACCAAGTATATGctggagggagagggagtgggctctgtttttgttattgATGGCAACACAGGCAACATACATGTTACCAAGTCTTTAGACCGCGAGGAGAAGGACCAGTACCATCTCATCGCAACAGCTACAGACCGTCAGACAGGCAGAGCCCTGGAGCCCTCGTCAGAGTTCATCATCAGAGTGCAGGACATCAATGACAACCCGCCTGTCTTCCTCGATGAACCCTATGTTGCCATGGTGCCAGAGATGGCCAACATAGGCACGTCCATAATCCAAGTCACAGCCAGAGATGCCGATGATCCCACATATGGAAACAGCGCCCGGCTGGTGTATGCCATTACTCAGGGCCAGGACTATTTCTCTGTGGATCCTCAGACAGGCGTCCTGCGGACAGCCGTACCTGACATGGACAGAGAAACTCAGGATGAATATCTGGTCGTCCTCCAGGCCAAAGACATGGGTGGGCATCTGGGCGGATTATCAGGGACCACCACCATCACTGTGAGGCTGAGCGACGTCAACGACAACCCCCCTCACTTCAGACGGAGTGCGTGGTCATTCTCCATCTCTGAGCTAGCAGCACCAGGTGTGGAGGTGGGCCGTCTCACTGCCTCTGATCCTGATCTGGGAGAAAATGCACAGCTGGAGTTCACTATCCTGGACACCGAAGAGGCTGAAACATTTAATATAAGCGGTAGAGACCAAGAGGCTGTCATTGTGCTGAACAAGCTGCTGGATTATGAGACCCGCAGCTCCTACACTTTCTCCGTGGAAGTTGCCAACCCTATAGTGGATGCGCGGTACCTAAGGAAAGGTCCCTTTAAGGACCAGGCGACAGTCCGGGTCATGGTCCTTAATGCTGATGAGCCGCCGCGATTCTCCCAGGCTCGCTACCATCTGGACGTGTCCGAGAACTGCCCGCCTGTCTGCTCCGTTGGCCGGGTCTTCGCTGTGGACCCAGACACAGGACAAAGCACCAACATCAGGTACTCCATCGATCCCCAGTCAGACCCCGAGGCTCTGTTCCGCATCGCCTCTGACACGGGCTTTATCAGCACAGTCATGGAGTTGGACCGCGAGCAGGAGCAGTGGCATAATATCACTGTCATCGCCACTCAGAGGGaCAATCCAAATCTTGTGTCAAGGGTTGTGGTTGCCATAGAGACCCTAGACCAGAATGACAATGCACCGGAGTTGGACAGGCAGTACACAACGTCTGTATGTGACTCCAGCGCCCCCGGTCAGGTAGTTCAGGTTCTGCGAGCCATTGACAGGGACCATGGAGGGCAGGACACCCCGATCCACTTCAGCATCCCTCCAGAGTCCAGCTCTGCCCTCAACCTCTCCATCAGGGAAACAGGAGGTGTGACAGCCAGCCTGGTGCTCCAGTCAGCCTTGGAGCCCCTCCCTGGCTTCTCCACATCCTCGCTCACCCTCTACGTGCCAGTTGTGCTGCGCGATGGAGCCTCGGGTCTGACCAACACTGGCACGGTCACCGTGACCATTTGTCCCTGTCTGCGAGGGGGCATGCAGACGGAGGacagggggagacagagggacaggAGATGGGAGAGACACATGGTTTGTCTACCCATGCCTTCCACCTCGCCGTCTCTCATCTTCAGTTTGGTCACCTTACTGGCCATGCTGGCTTGTGTCACCACTCTGCTGGTGGTGTGTGCACTCTCGCTGTCATTGCGCCATCAGAAGCGAGACTCCCACTCGCCCTTCGAGGAGGATGATGTCAGGGAGAACATCATATCCTACGATGACGAGGGGGGAGGGGAAGCGGACACCGCCGCTTTTGACATTacagcgctgcagagcatgCACAGAATACAGCACATGCACAACAACAGGAACATATGGTACACCCAGCAGAATCCGCCGAGGGCCAGGACGTACAGCTGGAGTCGTAACCCGCGCCCGGGCCTGGACCCTCAGCAGAGGCCCGGCTCGGCTCCACTCTACGGACGCCTGTGCTACGGCGTCCACACGCTGCCTGTTCTCAGAGATTATCCGGTCGGGCCACTGGAGGCAGGTCTGCAGCTAACGCAGCTGACCCACGGGCTCAGCGGTGGTCACATTGGCAATTCCCTCGTCATCCCAAACCAGAGCACCTTTGAGCCTCTGCGGCGCTCTCCCGAGACGAGCACTGCTAGTTACGACACAGAGCACATGCTGGCAAAGAGCAAAATCACAGACAGAAATGGAGGCAGTGAAGCAAACGCTGCTGACACAAACGAGAGTCAGGATCAGGCAAAGATAAATCCACATAAAGAAACAGAATCGACACCCGCCAACAACGCCGCCAATCTGACCCACTGCGACCCGACTGAGTCTTCATGCCAGAGTCACACCAGCTCCTCGTCAAACCAGCAAGAGGGGCGCCCGGGCTCATCGCAGACTCAGATCAGCACCGGAGCCACCAGCTGTACGTTAGACGACATTGACACTGACTCCTCCATTCCCTCCGTTTCCGAGCAAAATTATTCAAACGGCGGCGAAATCAACTCTGTAAACGATGCTGTTTACCTGAAAGGAGACACGTACAGCATTGTGGGCTCGCTGAATCCAAACAGCAGAGGGACGTGTATGAACGGGACTAGTGGCGGGGGGTTGTACCCAGCGGGAGTGCAGCTACTGAACATGTGCAGACTCCAGAGAAAGGAGCAGCCTTTGCCCTTACCCGGGGGGATGTTTGGCGACAGCAGAGGCTGGGCGTGCGGGGCGGAGCCTGCGAGAGCAGAAGCTGCCAACCCGCAGCCCCTCCGCATGGAAGAGCTCCTGAACATCCGCCTGGATcaggtgacctttgacctgtcgCAGCCGCCCTATGACTCGCTGCAGACTTACGAGTTTGAGGGCCGTGACTCACGGGCTGAGTCACTGAGTTCGCTGGAGAGCGACGGAGAGAAGGACGACGGGAGAGTGgtgggagggatggaggagctAAACCAGAAGTTTCAGAGGCTGGTGGAGATcatcagagagagggagaaggagaaggagaaggagaaggagaaggagaaggagaaggagaaggagaaggagggagagggagagggaggagagacagGTGGGGGTGGCAAAACACAGAGCCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136689 lncRNA upstream 78808 39437654 ~ 39438065 (+) True G101484
TU136677 lncRNA upstream 155165 39356483 ~ 39361708 (+) False prdm5
TU136663 lncRNA upstream 237920 39278652 ~ 39278953 (+) True G101464
TU136619 lncRNA upstream 326092 39190066 ~ 39190781 (+) True G101437
TU136609 lncRNA upstream 338127 39178244 ~ 39178746 (+) True G101427
TU136719 lncRNA downstream 19675 39564141 ~ 39565955 (+) False reps2
TU136732 lncRNA downstream 135612 39680078 ~ 39680526 (+) True G101519
TU136796 lncRNA downstream 194881 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA downstream 194881 39739347 ~ 39739963 (+) False LOC120565298
TU136817 lncRNA downstream 327190 39871656 ~ 39872173 (+) True G101579
XM_039810207.1 mRNA upstream 3215 39512710 ~ 39513658 (+) True LOC120564940
XM_039810213.1 mRNA upstream 29395 39478853 ~ 39487478 (+) True slc34a2b
XM_039810214.1 mRNA upstream 29395 39478874 ~ 39487478 (+) False slc34a2b
XM_039811658.1 mRNA upstream 52429 39454120 ~ 39464444 (+) True LOC120565708
XM_039812443.1 mRNA upstream 155140 39323588 ~ 39361733 (+) True prdm5
XM_039810210.1 mRNA downstream 16595 39561061 ~ 39592762 (+) True reps2
XM_039811121.1 mRNA downstream 53238 39597704 ~ 39661492 (+) False nhsa
XM_039811122.1 mRNA downstream 53238 39597704 ~ 39661492 (+) False nhsa
XM_039811120.1 mRNA downstream 53238 39597704 ~ 39661492 (+) False nhsa
XM_039811123.1 mRNA downstream 53238 39597704 ~ 39661492 (+) False nhsa
TU136690 other upstream 52423 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 636268 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2026801 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2384568 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2818004 36695437 ~ 36698869 (+) True G100671
TU136718 other downstream 16656 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 970627 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1680625 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1681168 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1908208 41452674 ~ 41453306 (+) True G102165

Expression Profile