RNA id: XM_039810215.1


Basic Information

Item Value
RNA id XM_039810215.1
length 5729
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120564946
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23659619 ~ 23666284 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAGACCGTGAGGGCGCAGAGCAGCGCCGCGGAGCGCACAGGCTTACCCGGGGAGAAGACACCTGTTACTGACGGAGCAAGTGGACAAAGACGTGTGTGTCTCCTTCTGTAGTGCGACAAACCTGACTGCACCTACTCCACACGCCCACACATCCCACTGTCTTGTGGGACCATGTGGGTTCTTGATAAGATCCGTGGGTCGGTGGAGACCGGCGTGCTGCGTCAGGGGGAGAACGGAGACAAGAAAGGCGTCGCCTACAGCAACGTTCTCACCCCCGACAAGATCCCAGACTTTTTCATTCCTCCAAAGCTGGTCAGTGGACCGCCAGAACCTGACATTCACAACGTAAAGCCCAAAGAAGGACTCCAACCCTCAACTTCAGAGCAAATTATCGGCAGTGGGAAGAAGATCAGCAGCCCAAGAAGTCCACGCCTGGTATCCAAGATTGCAGGAGACACCAAAAACTTGCTGAGAGCAGCAAACCGTCACATTATACAGATAGAGAGTGCCGATGATGTTGGAGACACCAATGCAGACCCTGGGTCGCAGACAGCAATGTCCCTGCCTTATGTACCCAAGACTCAAACACCTTATGGCTTTGCAACCCTGAAGGAAAGCCCCCACACTCGCCGTAAAGAGTCACTTTTCCACTGCGAGCATACCAGTCCTATCACCTCCCCAAACCCCCAGAGGAAGACCCAGGGGAGAAGCAGCGACGGGGGAAACCACCTGAACCCAGGTGACTTCAACACTTCTCACATGAATCCGTATCGGTACTTCAGCGGAGGGGAAAGTGACACCTGCTCCTCAGCTGAGTCCTCTCCCTTCAGCTCTCCCCTGCTCTCCCGCTCTGCCTCCCTGCTCAAGATCTTCACCCACGAGACGCAGGCCAAAGTCGGGAAGGTCAAGCGGACGTTCGCTCGCCACAGCTCCCTCTCCACCGACGAGTGCAGCTCTGCCGAGCCCAGCCCCAACATCCAGCGACGGCTCCACGTCCCCTCATTGCACGGTGCCGGAGCGTCAGACCACgggctccatcaggagcacacCATCAACCTGCACAAAGGCGGGACGGTGAGGATCAGCGCCAATTACGATTCCAGCACCTCCCGTCTGCTCATCCGGGTCCTGGTGGCGGAAAGTCTCTACGACAATCACTTTGACATCAAGAGCATCAACTGCTGCGTGTCCGTCTACCTGAACCCGGGCAAGCTGCAGAAGCAAAGGAGCAACATCATCAAGAACAGCCGCAACCCGGTCTTTAACGAAGACTTCTTCTTTGACTCGATAAGCTTGGTTCAGGTGAAGAACCTGTTAGTGAAGTTCAAGGTGATCAACAAAGGCACCAGCCTCAAGAGGGACACCCTGCTGGGAGAGCGAGAGGTGCCTCTACCCAAGCTGCTCTCAGGGGTTTAAAGCCACAGGACCCGGAGGTCAAAGGAGGCAAAAAAACAAGGAATGAAACTTAAATTTGATGCTTGCACTGGTTTCTATTCAAACTGCTCTTTTTATTCCAATAGATGAAAACAGTGAACATTACAATGAAGGTGGAGGTAGTGGAATATTTTCCTAGAAGGAAagtgagtctttttttttttcttttcttttctttgagatctaaaaatgtcaaaaatgaaCATGTTGATGTAGCATACGTGAACGGATGAAGGATTCATGGTGGTAAAGGCTTGCCTCGTTCTATCTCCCAATAATGAAAGCTCATTAAACCAAGCCGGGCTCGACAGCAACAGATGAACTCGACAGATGAAAGGTTTTTTTTCTGGACAGCCAACTTCCTCAGCCCGGTCAGGTTCAAAGGTTTGACGACACCTGTGCATCAGCCTGTCTCGGTATCCTTGCCTGGACTGTGTTCGTCATGTGtggcatggttttattattGTAATGTGGCATAAATCCACAGCAGCACAGGATGTGATTCGACATTACCTACACCGTGTGTTCCGCACAAAGATGCTTTTGTAAATCAGTGCTTTGAAGTGGCAATACATTCTAATGTGCAAATGACCCTTTGATCCCAGTTGCCATGGCCCACTCCTACAGGGGAGGGCGAGGGACAAACAGAGCAGCCACAATAgccacatttacatgcacatcaAAAATGCAAAGTCTTATGAATGCCATTATCCGATTATGTCAGTCTAATTATATTCTTAATAACAGAAAGTAGAACTGCAGTAACATATGTGCTGCCAAAATCTCTACGTTTTGTCTGTAATTTAGAACAATTGAACGTTAAAGTAAAAGGTGTCCTGTGGAAGTTTctagtaaacaaaaaaaaataatttaatatgtacttaatTGCCGTTTggttaaaatctcttgagccTTTTGAAGGACGTGTGGACGTTCCAGCTGCAGTGTGTCAGGCATGCCCCCATCCAGTGTGGGCACCTTGATTAAATTCTGTGCAACTAGGCAACAAGCTCTCGCCACATCTTCGCTCTGCATTCAGACCGGTTGGCGATACCTCTGTGTTATTCTGCACAGATTCTCAATTCCAAGAACAACCAAGACGATTGTTTTTAGTCGGTCACACAGCTTCAGTCAAACATGTCAAATCTGTCTTACTAACATTTGTTTTGATGATGCACCTAAAGAATAGCATTTAACAGATTTCACTGCTTTTTGGTTCATTTTGATAGCAGTGGGACAAGAAACAAAGTGATTAAAAGTCACACTTTTACTGTGTAATCAAATTAAAAAACGCATCCATCATGTTAACAGAATTTAATAGTCCTCAATTTATGCAACCAGGCTGCTGCCTTAGTCACAGTATTGGCAGTGGACAAATACATGCATGTACATTTCTTAAATGTCTCATATAAGAACAACAGAGCACTGGTGTGATCCAGATGCATGGCATGACTATGTCACTGAGTTACTGGTGTTTGCATGACATGCTCAAAGTTTTATGAAACCCTAAagccttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgagagaaagagagatagatagaaagaaagagtgtgtgtgttttgattagCATGACATTTTGTCCAAAGTAGTTGATTTTCTATGTAAGACGTAGTATTTTGTTAAAATGCTTTTGAGTGGGTTGAAATGTGTGTTGgatttgtactgtatattactacATGTTTACTAGTTTCTACAATTGTCAGCAAAATGCCAATTATGCACCAACGAGTGAGCAGTGCTGATGAGAGGCATTTTAATTATGTCTGTTTTAACTTAATGAAGCCCAGGGGGAAGAGGTGGAAATGTCAGAAAGAAATAAGGAAAACAATATTGTGTTTTGACATGAACAGCAGCTCTTGCCTCGGAGGAGAGCGACTACAGACATAAAAGAAGTTCGAGACATAAGAGTGATGCTAATTACTGAGGTGTCTTACACACTGCCCCATTTTACTTCTGAGAGGATTACTATCACCTGGTGTTTGTAGCTCACTTGTAGCACTGTTCTTGATGTGCTCTATATCCGTTATATACAGTGATACTGCTGGTTGGCTTTGTTATGGTGTGAAAGTCAGTAAACTGTTGTAACCCCTGTTGCAAACATACAGTGCCTGCTCGTAGAGTTATTGTATTTTCTACTCAAGCTTCCTAAATTGTACTGATCGCTGTTGTTACCAAACCCTTTCTGAGGTTTCTTCAAGCATGATTAACATACTTCAGTAGTGTCAGTAATGACTTTCAGTGGATTCATATTGTGCAGTGGTGGGTCGCCTTGTGCTCTGATTCTAGATGAGGATTTCCTGCCGacacaaatgtttaaaataagACATCTGAAATATAGGCGACGTGTTCTGCAAACTGTGTCCTATTGTTTTGAATAACTAATTGCTTTGACTGTTTTCATGTGGCTTATCATTTAATAGAAatgcaggaagaaaaaaaaacaataaaaaaatataccacTTCAGGCCAGGACTTGTCACAGATTCATATTCTGCAAATGGTGGAAAGTTGGGCCCCGTGTCTGAATAGAACGACTTTATAGCATATCTGAAGACTTGTAATATAACTGTTAGACTTTTgagctttttttgttgttgttaatttagggcatttctgcctttattagataagaaagctgagatatgaaagggtgagagagaggggggatgacatgcaggaaaaccatcaGAGTCAAACTCTGGACCTTCCATGTCAAGGAttaaacctctgcatatgtgtgcctgctctacccgctgagctaaccggccacacaCTTTTGAGCTTTAACAAAAGTTTTTCTttgactttctttcttttgcctAAAGATTACAAATCTTTGACAAGCAACCAGTTTTGGACTCCTGTCTCTGAATGGTTTCAGAAAAGGCAGAAACCAAAGACGAAAATGTAGGCTTTGCATTTCACATTTAACAACAGAGCACCATAAAGTTGCATTACTTTTTGCTGTCATGAATAGGGGACTTATTGAATTGGTTTGTGCACTTTGTATTGCTCTTGTGGTGGATTGTGAGCTCAGCTGGAGGCTTCTCTCTAACAGAAATATATTGAGCATTAAGCGGTGATAAGTCCTGACAAGACCccttaaatgtgtttttgaggtagtcacaaaacattttttgtttttgtaaaatgtaaacacTCTTCCCCATTTAACTAGTAGCTTTGCTAGCCAGCGAATGGCCTCAAAATTGTTGGAGAGATTAAAAATGGGAAGATAACTATCGGGGAAAAAATAGGTGTTGTCAGTGGAAACTATGTAGTTGCTACCTAATTCATATAAAGGGGTTattctctgtttttatttctacttCCATTAGTCTAGGTTTAGTCTCCTGCTACCATTAGCATGTTAGCCTGTTATGTTAGAAGTGTAGCTGAAACTGAAGGAAATTTTATTTGGTTGTTTTCACGGAATAGGTAAAACTCACTTTTTtaccgagagttagatgagaagatagataccactctcatatatGTAAGCTACGTAAATACTGAGCTAGAGCCAGGAAGCGATTAGAATTAGCTTAGCGTAAAGATGGAAGATGGTGTGAAATAGCTACCTTGTCTGACTCAGAAGTTAGTGAAAACAATacgcctaccagcacctctaaagctgaTTAATTAACGTGTTAAATTGCAATTGTTTAATTTATACACAAAACGAAATGCAACAATGATAAATTGTGGTTTTATGGGGAGTTAGGCCTACGTACTGTTACTAGTAGCAACCAGTGCCGTGACTTAgcaaactattcttttaaagGTGACATACATAAGTCTTAGACAAGTGGAAATATTGACCTGTTGGTGGCGCTAAATAAAATGTCAGCTGACCTCCAAAAGCAATCAGGATTCTCCCTTTGAGGATCATGAATATGTGTACCAAATGTTATGgcaattcattcaataaatattTCACCCTGGACCACCAAGTGTTGAACCAACAAACAGACAGCAACATACCCAGAATTACACTGATCGTGTGGTTAAAAACAAGGTTGGTTATTTTGGTTGACTTTTGTATGATCCACAGAGGATAACTTTTTATTCAGCCTGGTGGTGGAAATCAGTCCTTGTATCGCTGCACTCAATAGCTGTTTAATTAAACAAAGGGCGGAGAGGCTTGACTGATGACATTTAAAATGAGAATtgagtaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131791 lncRNA upstream 9163 23648343 ~ 23650456 (+) False cdc34a
TU131789 lncRNA upstream 11420 23647873 ~ 23648199 (+) False cdc34a
TU131718 lncRNA upstream 157041 23500976 ~ 23502578 (+) True G97615
TU131714 lncRNA upstream 161737 23494051 ~ 23497882 (+) True G97613
TU131715 lncRNA upstream 161737 23495835 ~ 23497882 (+) False G97613
TU131792 lncRNA downstream 38652 23704936 ~ 23705284 (+) True G97657
TU131820 lncRNA downstream 45813 23712097 ~ 23713463 (+) True G97679
TU131819 lncRNA downstream 46863 23713147 ~ 23713463 (+) False G97679
TU131849 lncRNA downstream 332117 23998401 ~ 24000025 (+) False G97702
TU131850 lncRNA downstream 332117 23998401 ~ 24000222 (+) True G97702
XM_039810423.1 mRNA upstream 9106 23631119 ~ 23650513 (+) True cdc34a
XM_039810415.1 mRNA upstream 31872 23600316 ~ 23627747 (+) False ap3d1
XM_039811184.1 mRNA downstream 123802 23790086 ~ 23830873 (+) False LOC120565386
XM_039811186.1 mRNA downstream 124776 23791060 ~ 23835654 (+) True LOC120565386
XM_039811187.1 mRNA downstream 124776 23791060 ~ 23830873 (+) False LOC120565386
XM_039811020.1 mRNA downstream 170386 23836670 ~ 23880166 (+) False tle5
XM_039811018.1 mRNA downstream 170389 23836673 ~ 23880166 (+) True tle5
TU131697 other upstream 181801 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 337710 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1083417 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1084471 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1084695 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 1115634 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1186017 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1201733 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1866541 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 2063974 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile