RNA id: XM_039810217.1


Basic Information

Item Value
RNA id XM_039810217.1
length 2393
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC120564948
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14345581 ~ 14361643 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGCACCTTAAACTGCTGTCAGATAGACAGATATATCTTTGTCTCTGAAGCAACAACATCGCTCTATTCAGCGGTGAAGCAGTGACACATACTACATAGGGCATATCACAGAGCTGAAAGTCCTGAAAAAACAAACTTTCTCTTGTTCATTTCCACCATCTACACCCAGGACTCCAAGCCAAAGTCCAGCCCATCTCTCCCAGGTCTCACCATGTCCATCGACCCGGCGGCCGAGCTGCCTTTCTTCTACGGCAGCATCAGTCGCTCAGATGCCGAGCAGCACCTAAAGCTGGCCGGGATGGCCGATGGGATCTTCTTGCTGCGACAGTGTCTCCGCAGTCTGGGAGGCTACGTCCTGTCTGTTGTGTGGAACCTGGAGTTTCACCATTACTCCATAGAGAAGCAGCTTAACGGTACTTACTGCATCTCAGGAGGGAAGCCTCACTGTGGGCCTGCAGAACTCTGTGAGTTTTACAGCAAAGACCCTGATGGGCTGGTGTGCATCCTGAAGAAACCCTGTCACCGCTCCCCGGATACACCGATACGTCCCGGCGTCTTTGACAACCTGAGAGAAAACATGCTGAGGGAGTACGTGAAGCAGACCTGGAACTTGGAGGGAGAAGCGATGGAGCAGGCCATCATCAGTCAAGCTCCTCAGCTAGAGAAACTGATCGCCACCACGGCCCATGAGAAGATGCCATGGTATCACGGTAAAATCTCCCGGCAGGAAGGTGAGAGGCGGCTTTACTCTGGAGCACAACCAGACGGAAAGTTTCTagtgagagacagagaggagtcGGGTACTTTCGCTCTCTCCATGATATATGGGAAAACAGTGTACCACTACCAGATCCTCCAAGATAAAGCAGGGAAATATTCAATGCCAGAGGGAACAAAGTTTGACACAATCTGGCAGCTGGTTGAGTACCTGAAGATGAAAGCTGATGGCCTGGTGACTAATCTCGGGGAGGCGTGTGTTAACGGAAAAACTGCTGGAAAGACACCCAGTCTTCCTGCAACAAGGCGGCCCGTCACAAATGGATACACACCGCCACCTCGAGCACCTACAGACCGTGAGGTTCTGCCGATGGACTCTGATGTATTCAACCCGTACCACAACCCGAATGAAGTGAGGAAGTTCAACATCCAGAGGACTCAGCTGCTGATAGATGAATTGGAGCTCGGCTCTGGGAACTTTGGCTGCGTCAAGAAAGGAACCCTCACGACTGAATCGGGCCAGGTTGATGTGGCCATTAAAGTGCTGAAGAGTGACAACGAGAAGCTGGTGCAGGAGGAGATGATGAGGGAGGCAGAGATCATGCACCAGCTGAGCAACCCCTTCATCGTCCGCATGCTGGGACTGTGCAAGGCTGAGAATCTGATGCTGGTCATGGAGATGGCCTCTGCTGGACCTCTCAACAAGTTCCTCTCCTCCAAAAAGGATACTGTTACCACGGAGAACATTGTCAATCTGATGCACCAGGTGTCAATGGGAATGAAGTATCTGGAGGAAAAGAACTTTGTGCACAGAGACTTAGCAGCTCGTAACGTCCTGCTGGTCAACCAACAGTTCGCCAAAATCAGTGACTTTGGGCTCTCCAAGGCCCTCGGAGCAGATGACAACTATTACAAGGCTCGTACTGCAGGTAAATGGCCTCTAAAGTGGTACGCTCCAGAATGTATAAACTTCCACAAATTCTCCAGTAAAAGTGACGTGTGGAGTTTTGGTATTACCATGTGGGAGGCCTTTTCCTACGGAGGGAAACCTTACAAGAAAATGAAAGGACCAGAGGTGATGCGCTTTATTGACAGTGGGAACCGCATGGAGTGTCCGCCAGCATGTCCAGAGCGAATGTATGCAGTGATGAAAGAATGCTGGATATACAAGCATGAGGAGCGTCCTGACTTCAAGAAGGTTGCAGAGTACATGAAGTCTTACCATTACTCCATATCGAACAAGGCCAAGCCTGAGGAAGCTGCAGCCGCCGCGCCGCCGCCGAGCCTATCAAGTAGACAGAAACAAGGCACATTCTGTCCCAGTGCTGCACAAAGCATCCTTTCAACTGGCCAATAAACAACTAAAACAAAGAACTTTTTATGAACGGTGCACACTGACCAGCTTCGACTACAGTACCGATACAGCTTAACAGGCCTCAGTGACAATAAATGTGCATTTGTAAATTGGGCTTCAGTGTGTCGACCATGTAAGGAGCatctctgtccgtctgtctgtcggttgggatttgaatgttaaatattGACGTCATTGATGAACAAAGTCATTTTATATTCTGCTATGTTGGAGTATAATGGGAGTATATGGTACATTGACAAGTTGATTTTTCCCTGTATCTTTTCATGCAAAATAAACTAGTAGAAAGTAGAAAGAAA

Function

GO: NA

KEGG:

id description
K07360 ZAP70; tyrosine-protein kinase ZAP-70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128557 lncRNA upstream 81695 14258285 ~ 14263886 (+) False LOC120565959
TU128558 lncRNA upstream 81695 14258285 ~ 14263886 (+) True LOC120565959
XR_005640311.1 lncRNA upstream 83689 14258356 ~ 14261892 (+) False LOC120565959
XR_005640310.1 lncRNA upstream 83821 14258357 ~ 14261760 (+) False LOC120565959
TU128541 lncRNA upstream 122987 14220571 ~ 14222594 (+) True G95299
TU128645 lncRNA downstream 7279 14368922 ~ 14369226 (+) True G95372
TU128745 lncRNA downstream 184893 14546536 ~ 14639046 (+) True G95447
TU128779 lncRNA downstream 327739 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA downstream 334039 14695682 ~ 14698562 (+) False LOC120565380
TU128781 lncRNA downstream 337907 14699550 ~ 14700145 (+) False LOC120565380
XM_039810666.1 mRNA upstream 142217 14173719 ~ 14203364 (+) True acsbg2
XM_039810665.1 mRNA upstream 142217 14179012 ~ 14203364 (+) False acsbg2
XM_039810667.1 mRNA upstream 142217 14179012 ~ 14203364 (+) False acsbg2
XM_039811643.1 mRNA upstream 200640 14081556 ~ 14144941 (+) True fcho1
XM_039810521.1 mRNA upstream 280031 14034257 ~ 14065550 (+) True tprb
XM_039811954.1 mRNA downstream 1152 14362795 ~ 14368554 (+) True mob3a
XM_039811953.1 mRNA downstream 1152 14362795 ~ 14368554 (+) False mob3a
XM_039810169.1 mRNA downstream 13060 14374703 ~ 14388497 (+) True mknk2b
XM_039810166.1 mRNA downstream 30269 14391912 ~ 14404185 (+) False rexo1
XM_039810167.1 mRNA downstream 30282 14391925 ~ 14409422 (+) True rexo1
XR_005640172.1 other upstream 962837 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1125209 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1245136 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2901048 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 3096934 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 257715 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 448725 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 448725 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1958851 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3493994 17855637 ~ 17859152 (+) False nppc

Expression Profile