RNA id: XM_039810223.1


Basic Information

Item Value
RNA id XM_039810223.1
length 2075
RNA type mRNA
GC content 0.45
exon number 1
gene id sox14
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29266362 ~ 29268436 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTTTGGCTCGTATTCACGCTCTTCCGCTCATTTCCAAGCCAGGTGCTTGACGACAAAcctcagagagggagagagagagagagagagagagcgagagagagagagagagagggagagtgcgtcgcagaaaaaaaaataacacttttaCGACTCCTGCAAACTGACTGCGGAACATTGCTTTCACCTTTGTGGATTTCTTTACGTGTGTGCATcttacatgtatttttttctcctgtattgCCTGCCGCAGGTCTGAAAGAGAGTTGTAACCGGACTTGAACGAACGCGCATCAGTGTTTTAACTGGAAAAGCAAAAACCGGGCgctggatttttattttttttctcttttatttttgctgttttCCAGCCAGACTCAGAACATCTCAGACGTGGCATGACTGGTATCTGGCATCTAGACAGGTGAATAGTTTCCCTTCCTTCCGAAAAGAACTTTTCCTCGTCATTAAACATTGGGGATAAAAAAAGTAtaggctacttttttttttaaagatgtcaAAGCCTGCTGATCATATCAAGAGACCCATGAACGCGTTCATGGTTTGGTCCCGGGGCCAGAGGAGAAAAATGGCACAGGAGAATCCCAAAATGCACAACTCGGAGATCAGCAAAAGACTGGGCGCCGAGTGGAAGCTGCTGTCCGAGTCTGAGAAGAGACCTTACATCGACGAGGCCAAGAGGCTGCGCGCTCAGCACATGAAGGAGCACCCCGACTACAAGTACAGACCCAGGCGCAAGCCCAAAAATCTGCTCAAGAAGGACAGGTACGTTTTCCCTTTGCCTTACCTCGGGGACACCGACCACTTGAAGGGACTCCCCATGTCGGCCGCGGACTCTCTGTTGAGCCACTCCGAGAAAGCCCGAGCGTTTCTGCCGCCGACGAGCGCCCCGTACTCTTTCCTCGACCCGAGCCAGTTCAGCTCCAGCGCCATCCAGAAGATGACGGAGATGCCGCACGCGCTGAGCACCAGCACTTTGCCCTACGCGTCCTCTTTGGGATATCAGAACGGTGCGTTCGGCACCCTTGGGTGCCCCAGTCagcacacccacacccacccgTCGCCCACAAACCCGGGCTACGTCGTCCCGTGTAACTGCTCGGCCTGGTCCACGTCAAGTTTACAGCCCCCGGTGGCCTACATACTTTTTCCAGGTATGACCAAGACTGGGATAGACCCTTACTCATCCACACACGCCACTGCCATGTAACCCTCAAagactcttttttcttttctttttttttaattcacttgAATACTGAAATGCATGTAAATATAATATGGACAGCGCGCCCATTGAGAAGGCATGAACATTATTAGCTGCCTTGGACTTGTTAtggcaaaaaaagagagagagaaaaagaaacttTTCCAGAAATCCAACAAGTTCCTGAGTCGTGCAGAGGAGCTGGGATTTGGTGTAAAGGACGGTGCCCTGTGAACTGtaagaaatgtaaatgttatAACGTTTATGGCAGCCCGAAAAAGGAGGCCTTTAACTTTATTTATTGTGTACATTTCAATGCTGATATGCTGATTTGTGTTGATTATCGATAGGgaactctttttatttttgacaatttggctTGCACAATTAGCATTCTTATTTCCTGTATAGGCCTAAGTAGTTTACATTTTTGGCACTCGTAATTTTATGAAAAATCTCAATCTAAATCAGAACCTATAGGCTGGACTATATACGggtcatattgtttatattgatCAAAACCTGGCACATAAAACTAGACGGTCTATTTAAGAtgacaaagagaagaaaaaaaaacccatttacgttcaaatgttttattttgctttttttccctgTGGTTCAGTGCTAATATAGTCACacgcgttttgttttgttttcgtTTTTAAGGATAACTTCTATTTGAATTCAAGGagttatatatgtgtattatcATCCAAGATGGTAATTTAAAACCTGTCATGTTATGGAAAGGATAATGTATCTTGAAGGTTGATACCTCCTGCTCTTTGTTCAATTGCTGAGCAAAGGCATTTCGAATAAAGACAATCTGTCTTCAACGCTATCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133866 lncRNA upstream 109255 29156684 ~ 29157107 (+) True G99238
TU133827 lncRNA upstream 231956 29019535 ~ 29034406 (+) True G99217
XR_005640343.1 lncRNA upstream 273752 28992228 ~ 28992610 (+) True LOC120566147
TU133794 lncRNA upstream 294276 28970487 ~ 28972086 (+) True G99189
TU133740 lncRNA upstream 400882 28859733 ~ 28865480 (+) False ralgps2
TU133892 lncRNA downstream 169726 29438162 ~ 29438722 (+) True G99261
TU133924 lncRNA downstream 324929 29593365 ~ 29593623 (+) True G99292
TU133931 lncRNA downstream 427171 29695607 ~ 29695933 (+) True G99299
TU133966 lncRNA downstream 491607 29760043 ~ 29760366 (+) True G99327
TU133968 lncRNA downstream 505881 29774317 ~ 29775080 (+) True G99329
XM_039810900.1 mRNA upstream 201260 29042904 ~ 29065102 (+) True hdlbpa
XM_039810901.1 mRNA upstream 201260 29042904 ~ 29065102 (+) False hdlbpa
XM_039811270.1 mRNA upstream 299779 28959154 ~ 28966583 (+) True dtymk
XM_039811269.1 mRNA upstream 307266 28953375 ~ 28959096 (+) True agxta
XM_039811395.1 mRNA upstream 379304 28865643 ~ 28887058 (+) False fam20b
XM_039812006.1 mRNA downstream 58081 29326517 ~ 29331778 (+) True LOC120565897
XM_039812235.1 mRNA downstream 83966 29352402 ~ 29373466 (+) False hs2st1b
XM_039812234.1 mRNA downstream 83967 29352403 ~ 29373466 (+) True hs2st1b
XM_039812314.1 mRNA downstream 153943 29422379 ~ 29436496 (+) True lmo4b
XM_039811912.1 mRNA downstream 473957 29742393 ~ 29755409 (+) True lrrc8c
TU133723 other upstream 491852 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 1120037 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 1181975 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 2470623 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 3246991 25991506 ~ 26019371 (+) False dot1l
TU133929 other downstream 395197 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 1159067 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 1542082 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 2354262 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 2361380 31629816 ~ 31631501 (+) True G99803

Expression Profile