RNA id: XM_039810283.1


Basic Information

Item Value
RNA id XM_039810283.1
length 2433
RNA type mRNA
GC content 0.48
exon number 9
gene id dhcr24
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37782584 ~ 37791624 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTCACCTATCGCAGTGAAGGGGTGATCGGTTTGGGTTTGGCATAATCGATGCAGAGTTCTCCCCCCACATGTATCTCCCAGCGGTCAGTTTAATAGTTTAACTAAAGAGTGTGTCAGATAGCCGACTTTAGTTTGGAGAACGTTCCCATTTGGATCGGAACTGTCCACAAACGATGGACTCGCTGTTGTATTTAGCCGGCTTGGTGGTTTTGCTCCTGCTGTGGATCAAAGTCAAAGGTCTAGATTACGTGATCGTTCACCAGCGGTggatctttgtgtgtttgtttctgctgCCGCTCTCCGTTATATTTGATGTGTATTATTATGTGCGGGCATGGCTCATTTTCAAGATGTGCTCTGCGCCCAAACTGCACGACCAGCGCGTGCGGGACATCCAGCGACAGGTGCGTGAGTGGAGGAAGGACGGCAGTAAGACCTACATGTGTACGGGTCGGCCCGGCTGGCTCACCGTATCTCTCAGAGTGGGGAAATACAAGAAAACCCACAAGAACATCATGATCAACATGATGGACATTCTGGAGGTGGACACAAAGAGGCAGGTGGTGAGAGTAGAACCGCTGGCCAACATGGGTCAGGTGACTGCTCTCCTCACCTCTATTGGCTGGACACTGCCTGTGCTGCCCGAGCTCGATGACCTCACTGTGGgTGGTTTGGTGATGGGTACAGGCATTGAGTCATCCTCTCACATTTACGGGCTGTTTCAGCACATCTGTGTCGCATTTGAACTGGTTCTAGCTGATGGCAGCTTAGTACGCTGCACTGAGGAGGAGAACCCAGACCTGTTCCACGCCGTCCCGTGGTCCTGTGGAACGCTGGGGTTCCTGGTCGCAGCGGAGATTAAAATAATCCCCGCTAAACCCTGGGTGAAGCTGCACTATGAGCCGGTCAGAGGGCTGGAGAACATCTGTAAACGGTTCACTGAAGCATCGGAGGACAAACGGAACTCGTTTGTAGAGGGCCTCCAGTACAGTCGGGACACCGCCGTCATCATGACGGGAGCAATGACTGACCACGCCGAGCCGGAGAAGGTCAACAGAATCGGCCTGCACTTTAAACCATGGTTCTTTAAACACGTGGAGGGCTACCTGAAGGGCGACTACGCAGGAGTTGAATACATCCCTCTAAGACAGTACTACCatagacacacacgcagcatCTTCTGGGAGCTTCAGGATATTATTCCTTTCGGCAACAACCCAATATTTCGTTGGCTTTTTGGATGGATGGTTCCTCCGAAGATCTCACTGTTGAAGCTCACCCAGGGAGAGACCATCAGACGGCTTTATGAACAGCACCACGTGGTCCAGGACATGCTGGTACCCATGAAGAATCTGCAGGATGCCATCACGCGCTTCCACCAGGACATCGACGTCTACCCTCTGTGGCTGTGTCCATTCCTGTTGCCGCCAGGCAGAGGGATGGTCCACCCCAAAGGTCAAGAGGAGGAGTTGTATGTGGATATTGGGGCTTATGGAGAGCCCAAAGTCAAACACTTTGAAGCTAAAGCATCAACGCGTCAGCTGGAGAAGTTTGTTAGAGATGTGCATGGGTTCCAGATGCTGTATGCAGATGTGTACATGAACCGAGAGGAGTTTTGGGAGATGTTTGACGGACAGCTGTATCACAGACTGAGAGACAAACTAGGCTGTAAGGAGGCCTTCCCGGAGGTTTACGACAAAATCTGTAAATCTGCCCGACACTGAACCCCATCACTGGTACCTGACCTCCGCCCCGAGTCACAGATACACTCAGGCTCTGACTGCAAGTCATGTTTGCCGGCAGCTTCTGGTTTGGGGATgtttcaaaaacaacaaaaacaaaaactgttttATTCAAAGATGCTTTAAAGAATTCGAAAATAAGCTTTGCTCACACTACTAGCTGATGGCTAAGGTGTTTGTTCGTGGCAACTAAACTGTCTTAAGAGGCCCTTCTATCAATGTGAGGCAAGAGCACCAGTGTTGTTATACTTTTGAGTATGatgaatgtattttattttgcccTTTTCTGTACACCTACAGCTTGTTTCAACATGCATGTTCTGATTCAATGCTGCTTAACTCCCTATGTGTAACTTGTCCTTGTTGGGAGCATATTGCACCAAGtatttttcccttctttttcttttttttaaatgtgtatgttCGGCCTTATCATGACAGAACCTTTGCATTTCTCTGTACATCTTTTAATAACAGGTCAGCCTTACCGAGTGCCATAGACTTTGAAAACATGACTTCCTGATTAGCGTCCTAtccatattttaaaataaataggcTACTTTTGTGATATGAAGAAATCAAACAAACTATATTAAGTAAGCTACCTATTTTGATATCAAAATCACTTATCACCAGGACCGTGTGATttgaatgaattaataaaaatgtctttCCTGGAATAAATATCA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K09828 DHCR24, DWF1; Delta24-sterol reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135969 lncRNA upstream 15808 37766191 ~ 37766776 (+) True G100926
TU135960 lncRNA upstream 30446 37750861 ~ 37752138 (+) True G100917
TU135946 lncRNA upstream 123491 37658841 ~ 37659093 (+) True G100906
XR_005640318.1 lncRNA upstream 207765 37569084 ~ 37574819 (+) False LOC120566005
XR_005640317.1 lncRNA upstream 207765 37570552 ~ 37574819 (+) True LOC120566005
XR_005640175.1 lncRNA downstream 17644 37809268 ~ 37813410 (+) True LOC120565000
TU135981 lncRNA downstream 22159 37813783 ~ 37814040 (+) True G100938
TU135983 lncRNA downstream 25749 37817373 ~ 37817757 (+) True G100940
TU136010 lncRNA downstream 47278 37838902 ~ 37839531 (+) True G100956
TU136018 lncRNA downstream 79832 37871456 ~ 37873735 (+) True G100963
XM_039810889.1 mRNA upstream 32389 37699054 ~ 37750195 (+) True usp24
XM_039810892.1 mRNA upstream 32389 37699054 ~ 37750195 (+) False usp24
XM_039810890.1 mRNA upstream 32389 37699054 ~ 37750195 (+) False usp24
XM_039810893.1 mRNA upstream 32389 37699054 ~ 37750195 (+) False usp24
XM_039810894.1 mRNA upstream 32389 37699054 ~ 37750195 (+) False usp24
XM_039810284.1 mRNA downstream 1657 37793281 ~ 37796949 (+) True si:ch211-121a2.4
XM_039810286.1 mRNA downstream 22993 37814617 ~ 37816345 (+) True aqp12
XM_039812427.1 mRNA downstream 44783 37836407 ~ 37838105 (+) True cep19
XM_039812437.1 mRNA downstream 52102 37843726 ~ 37849600 (+) False LOC120566156
XM_039812435.1 mRNA downstream 52105 37843729 ~ 37849600 (+) True LOC120566156
TU135875 other upstream 292512 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 650279 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1083715 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1248045 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 1085587 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1668822 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1769498 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2723469 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 3433467 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile