RNA id: XM_039810326.1


Basic Information

Item Value
RNA id XM_039810326.1
length 4420
RNA type mRNA
GC content 0.46
exon number 17
gene id ddr2a
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28218202 ~ 28253130 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTGTCTTACATCAGCCCAGAGAGCCCTGGTGAAGGACTGACAGCGAGCGAGAGAAAGAAGGGCTCAGATTGTAAAGTCCGGCCGTCTTGACTCTCACTGGAATAATCTAAAACCATCTCTGAACAAATGGTCTGAAAGGCTGAGACATCTTAGAAATTGGAAgcctgtctctgtgcgtgtgtttggGATGAAGCACCTGTGGGACGTTCACTTCCTCCTGCTCATCCTCCTCTGCCTGTTAGGAGCCGTCACATCACAGGTCAACCCAGgtgtgtgtcGGTATCCTCTGGGCATGTCAGGAGGACAGATACAGGACGAGGACATCTCTGCCTCCAGCCAGTGGTCTGAATCCACCGCTGCTAGATACGGCAGGTTGAACTGTGAGGAGGGCGATGGCGCGTGGTGTCCAGAGACAACAGTGGAGCCAGACAGCCTGAAGGAGTTCCTCCAGATTGACCTGCGCTCGCTCCACTTCATCACCCTTGTGGGCACTCAGGGGCGTCACGCGGGAGGCATCGGTAATGAGTTTGCCCAGATGTACAAGATTAAGTACAGCCGCGATGGCAGCCGCTGGATCTCATGGAGAAACAGGCAGGGCAAGCAGGTGATTGAAGGAAACAGGAACGCCTACGTCATTGTACTCAAGGACCTCGAGCCGCCCATCATCGCTCGCTTCGTCCGCTTCATGCCCGTCACAGACCACTCCATGAACGTCTGCATGAGAGTGGAGCTCTATGGCTGTGAATGGCTGGATGGTTTGGTGTCGTACAACGCTGCAGCAGGAGAACAGATGAGCTTGCCTGCTTACTCTGCTTATCTCAACGACTCTGTCTATGATGGAGCTGTCAcccacagTATGACAGAAGGCTTGGGCCAGCTGACTGATGGAGTGTGTGGCCGGGATGATTTTACACAAAGTCACGACACTCACAATGTGTGGCCTGGGTATGACTACGTGGGTTGGACTAATGAGAGCTTCTCCAATGTTGAAATCATGTTTGAGTTTGACCGCATACGCAACTTCACCACCATGAAGGTCCACTGCAACAACATGTACTCGCGACACGTCAAGGTCTTCCGCCTGGTGGTGTGTTACTTCCGCTCTGAGGCAGACTGGGAAGCCACGCCGCTCTCCTTTAGCCCCGTGGAGGACGTGGAGAATCCCAGCGCCCGCTTCGTCACCGTCAACCTGGCCAATCACATGGCCAGCGCCATCAAGTGCCAGTTCTACTTTGCTGATGTCTGGATGTTGTTCAGCGAGATCACCTTCCAGTCAGATACAGCCATGTACAACACAACACTGGCTCCTCCCAAGACGGGACTGCCACCTGTCACACCAGAGGATGACCCTACCCACAAAGTAGATGACAGCAACACCCGCATACTGATTGGTTGTTTAGTGGCCATCATCTTCATCCTCGTGgtcatcattgtcatcatctTGTGGAGGCAGGTGTGGCAGAAGATGTTGGAGAAGAGTGAGACGTTCGCTTACATCCACAACCAGTCGAGCACAACCAGTGAGCAGGAGTCTAATTCCACCTATGAGCGCATCTTCCCCCTTGGTCCAGACTACCAGGAGCCATCACGCATCATATGTAAGCTGCCGGAGTTTGCTCAGAGCTCCGAGGAGCCTGCTTCCACTAGCACATCAGCTTCTAAATCCACCACAACTACTGcagtccaagatggcgcccCTCACTACGCAGAGGCAGACATTGTAAACCTGCAAGGCGTAACCGGAGGCAACACATACGCCATCCCCGCGTTAACTATGGACCTGTTGTCAGGGAAGGATGTTGCAGTGGAGGAGTTCCCGCGAAAGCTGCTCACATTCAAAGAGAAGCTGGGAGAGGGCCAGTTTGGAGAGGTGCACCTGTGCGAAGCAGACGGAATGCAGGAATTTATGAATAAAGAGTTTTTATTTGACATCCCCGAGGACCTGCCAGTTTTAGTGGCTGTGAAGATGCTCCGCTCAGACGCCAACAAAAATGCAAGgAATGATTTTCTGAAAGAGATAAAGATCATGTCACGTTTGAAGGACCCCAACATCATTCGCCTGCTAGCTGTGTGCATCTACAGCGACCCTCTCTGTATGATCACAGAGTACATGGAGAACGGAGATCTCAACCAGTTTCTGTCCCGCCACGAACCCGAGGGACAACTCGCTCTGCTCAGCAATGCACCTACAGTCAGCTTCAATAATCTGTGCTACATGGCCGCTCAGATAGCGTCGGGGATGAAGTACCTCTCCTCTCTAAACTTTGTTCATCGAGACTTGGCCACACGGAATTGCCTGGTGGGCAAAAACTACACGATAAAGATAGCTGACTTTGGCATGAGCAGAAACCTGTACAGTGGTGACTACTACCGCATCCAGGGCAGAGCGGTACTGCCGATACGCTGGATGTCATGGGAGAGCATCCTGCTGGGTAAGTTCACCACAGCTAGCGATGTGTGGGCTTTTGGGGTGACCCTGTGGGAGATACTAAACTTCTGCAAAGAGCAACCCTACTCTCAGCTCACTGATGAGCAGGTGATAGAGAACACAGGGGAGTTTTTCAGGGACCAGAAAAGACAGATCTACCTGCCTCAGCCTGTGCTGTGTCCAGACTCGCTCTACAAGATCATGTTGAGCTGCTGGAGGAGGAACACGAAGGAGCGGCCCTCCTTCCAGGAAATACACCGAGCCCTCCTGGAAATACAGCCTTAAGCCGGGGCAATGTTAAAGACAGTGATTCCCAGATAGTTCATCTCTGGAAGAAATGGTGCAAGACAAGAGTAGACCATGATTCAGACACAATCCAGGTTCAAGCCTTCTTGTTTCAGTAGAGAAACAGGGTGAGAGCCACCTGTGGGCTCCAAGCTATGATCTGGGAAACACTGTTTCATGGACTTACACTCTACAAAGATGGAATACCGGTTGGTGTGTGTCAATTTGAGTTTAATTGGCACAGTCACGTTGGCTAAGATGTTTATAGACATACAGGTATCCTTAGAAAAatctattttgttttataacATGCAGAAACGTGATTAAGGTGGGTTGTGACGTGTGTTGATGAAGCCAAAATTAAATGTAGCAAGTGACATTCGGCACTTttgaaatattgtttttattctttttttttttttatgatgatgAGTCCAATTTTCCATGTTACAGTGTTTGAGAACAAAACGTGTGCAGCATTGTTGAAGaactttcttgtgttttcttttggaaGACTGCTTGAATGTAGAGCGGGAAACGTGCAGCCAACCATGGCTGTTacatttcattatatttcaAGTATTTCATCTCAGTTTCTCAGACATACTCCACACATTTGGAATAACAAGGAAATATCAAGTAACTTCTCATCTCCCTGCAGTTTTCCTTCTGTGATTTGAACATGAAGTGTGTATGAACTGGGTATTTTCAATAGATAGGTCTAAATCTCAAATggcaatattttgtattaatatttaTATGTTCATATGTGTTTCATCTGGTTTATGTTTTGTTGATATATTTGTGGTTTATTATTCTTTCCTAGTTGACGTGTTTGGAGCatcatatttgatttgattcagTAACTCTGCCACTCACATTTTAGATCTAAACACCAAACAAACTGCTTTAGTAGATTTTTTTCCCACTGCAaactgttattgttattgtcttGCATCGATCACAAACTAATATTACTCTCTTATAATTCAAGATGCTTATCAGGTATGCCGGCTGCGTTTTGCTATGTCGGTTCAGCAGTATGTTGAACAGTATGAATGCTTCAGGTTAGTTTATATTAGCTTGTGAAAGCTAACACACCTAATGACTCATCTACAGGCTTTAATTATTAGcttgttctttcttttgttgATGTATGCTGGACTCTCTGGACTCTTTTCCCCTCTTTTCTACTTCTGTGTATAACTCTCTAATAGCTTGAACTTCATGCTGCATACCACTGTTTTTCACTTTAGCTGGATTCACAAGCTCGACCCTCTTATCAGAGGCCTTTGTCCCATTTTACTCGTTCATAAAAGACACTCATGTCTGCCCTTATGCACGATATTTTCAACTTTTCATTTACAAGTTATCCTTATCTTTCTGTGTTTTGCAGTCTAGgcaaaaaaatccatccatgtaAGTTTAATATGATATTCATTTTGCAGACACATTTGGGTATTTGTGAACCATGTGGTGATTCCCATCAAATAAAGaaatctttctcctctctctgtttatAAATGAATTTGGGGGGCAGATGTATAGCTGTAAAAATGTAATGGCACCCTGACAGATTTCATGAttggttttattacatttttgtacttAAATGTTTCAGTAAGAATGTTTTTATATACGTTGTAAACAAATGTTGTACATTGATAGacgaaatacaaataaaatgttaacaggGAATAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133277 lncRNA upstream 338470 27879317 ~ 27882311 (+) True G98770
TU133272 lncRNA upstream 361658 27855676 ~ 27859123 (+) True G98766
TU133269 lncRNA upstream 371843 27848733 ~ 27848938 (+) True G98763
TU133262 lncRNA upstream 387959 27832239 ~ 27832822 (+) False ncanb
TU133263 lncRNA upstream 560720 27659696 ~ 27660061 (+) False ncanb
TU133530 lncRNA downstream 59464 28312594 ~ 28318888 (+) True G98972
TU133553 lncRNA downstream 196413 28449543 ~ 28460166 (+) False LOC120565132
XR_005640191.1 lncRNA downstream 203863 28456993 ~ 28460210 (+) True LOC120565132
TU133552 lncRNA downstream 203863 28456993 ~ 28460166 (+) False LOC120565132
TU133572 lncRNA downstream 316518 28569648 ~ 28570858 (+) True G99007
XM_039810330.1 mRNA upstream 2700 28205492 ~ 28218081 (+) False uap1
XM_039810327.1 mRNA upstream 2700 28205493 ~ 28218081 (+) True uap1
XM_039810329.1 mRNA upstream 2700 28205498 ~ 28218081 (+) False uap1
XM_039810328.1 mRNA upstream 2700 28205897 ~ 28218081 (+) False uap1
XM_039810323.1 mRNA upstream 28651 28179468 ~ 28192130 (+) True chaf1a
XM_039810266.1 mRNA downstream 165 28253295 ~ 28257604 (+) True hsd17b7
XM_039810267.1 mRNA downstream 165 28253295 ~ 28257604 (+) False hsd17b7
XM_039811435.1 mRNA downstream 7925 28261055 ~ 28269639 (+) False serbp1a
XM_039811432.1 mRNA downstream 7926 28261056 ~ 28269639 (+) True serbp1a
XM_039811434.1 mRNA downstream 7926 28261056 ~ 28269639 (+) False serbp1a
XR_005640167.1 other upstream 74456 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 136394 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 1425042 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2201410 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2488604 25730258 ~ 25732177 (+) False slc35a3a
TU133723 other downstream 519258 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1410503 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2174373 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 2557388 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 3369568 31622698 ~ 31625796 (+) True G99791

Expression Profile