RNA id: XM_039810328.1


Basic Information

Item Value
RNA id XM_039810328.1
length 2340
RNA type mRNA
GC content 0.48
exon number 11
gene id uap1
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28205492 ~ 28218081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGTTTATACTAAATGTCCTCTGCTACGAGTGAAGAGGCACACTTGCTTGTGTTTTGGTAAGAATAGCCTCAACTTAACGACGCTGAAGTTGGCATTCGATTCGCAACTTCCGATTCGGCAGTGTGGCAGAGTTAATCAAAAGCACTGTTCATCATGGACCCTAACGCCAGCGGACTCACCAAGAGGTTGGCCGAAGCCGGCCAGTCTCACCTCCTGCGGTTTTGGAaagagctgagccctgaggaGCAGGCCGAGTTGACCCTTGACCTGCAGGGGATGGACTTTCAGGAGATCAACGGGTTTTTCAAGAAGGCCATGGAGACGTCCAGCAGCAAACAGGAAAAGATGGACAGCCGCATGGAGCCGGTGCCCCGGGAGGTGCTTGGGAGTGTGACTAGGGACAGGGAGAGTCTTAAAGACTGGGAGGTAGCAGGTCTACACTGCATCTCTCAGAGTAATGTGGCGGTCCTGCTGCTGGCTGGGGGCCAGGGAACCAGACTGGGGGTCTCTTACCCTAAAGGCATGTACGATGTGGGACTGCCGTCTCACAAAACCCTCTTTCAGATCCAGGGCGAGCGCATATTGAAGCTACAACAGCTGGCTGAGCAGAAGCACAAAAACAAGTGCTGTATTCCCTGGTACATCATGACCAGCGGAAGGACAATGGAGTCCACCAAGGACTACTTCTCACGACATGACTATTTTGGCTTGGACAAGAACAACATCATCTTCTTCCAGCAGGGCATGCTACCAGCCATGGACTACCAAGGCAAGATCATCCTGGAGAACAAAGGAAAGGTCTCCATGGCCCCTGatGGGAACGGGGGTCTTTATAGAGCTCTGGGGAACCAGGGCATCATGGATGACATGGAGCGGAGGGGGATTGAAAATGTCCATGTGTATTGTGTGGATAACATCCTGGTCAAAGTGGCAGACCCCTCTTTTATTGGTTTCTGTGTGAAGAAGGGAGCGGACTGTGGAGCTAAGGTGGTGGAGAAAACCAATCCGACGGAGGCCGTGGGTGTGGTCTGCAAGGTGGATGGGCGTTATCAGGTGGTGGAGTACAGCGAGATCACCCTGGCAACAGCTGAGAAGCGCAGCGCTGACGGCCGACTGATGTTCAACGCAGGAAACGTGGCCAATCACTTCTTCCGCTTTTCCTTCCTCAGAGACATAGTACAGAAATACGAGCCAAATCTGCAGCACCACGTGGCCCAGAAGAAGATCCCATATGTGAATGCGGAGGGTCAACTAATCAAACCAGACAAACCAAATGGGATTAAAATGGAAAAGTTTGTCTTTGACATCTTCCAGTTCGCCAAGACATTTGTTGTGTACGAGGTTCTGCGGGAGGACGAGTTCTCCCCGCTGAAAAACGCAGACAGTCAGGACGCAAAGGACACGCCCACCACAGCCAGACACGCCCTCATGTCCCTCCATCACCGCTGGGTGCTCAACGCTGGGGCCCACTTTATCGATGAGAACGGCAGACATGTGCCTGCCATACCCAGAGACGGAGCAGCAGGCAGTGTCAAAGATGATGGCAACAGAAACCTGAAGGACGGAACAGACCTGCCAATCAAATGTGAGATCTCTCCACTGGTGTCCTACGGGGGAGAGGGTCTCGAAGAGCTGGTGAAGGGACGAGAGTTTCATCCAACCCTGATGATCGACGGGAACGGAGTCCATGAGCTGGTGAAGAATGGAGTTTAGACAATgaaggggagaggaagagatagAGGGACAATCCAAAGACCAAACTCCTTTTGTCTCTTAACATTTGCGGAGAGAAACTGTGATGTCACGATTGTGCAATAACAAATGTGCATGTGTTCATGAAAGAGGCTGTCGTCtccagaatgaatgaatgaactagCCAGATGAAGCGTATCGTTTACTTTTCAGCTCCAAGCTTTCTCTGCTTTATATGTTGATGTCATACTTGGTTAATATTTGTTTTGAAGAGCACTTGAACATAGCATAAGATGAAGGACGAAATCCTTGTCACACTGACTGGATGAAGCAGTCTTCaggtgcatgtatttattttgcttATGAGACTTATTTTTATATGTACTGATAGATGATCTATAGGTGGAAATGACCATCTACTCATTTTACCTGGTGATTTTTATACAACATAGGTCTGAGATGAAATGATCAGAATGATGTTTCTTACTAGCATGTAATCGAGCTACATGGTACAGGCTGTGGGGGGTATTTATAATATCTGTTTGTTTTCTCCTTGTAATCATTGAAGATTAGATATTCAGCTTTAAGAGATGCTATGATTTCTATCATCTTTATTAAAGTCATTTCCTAATCGGAAAACCTTGTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133277 lncRNA upstream 323586 27879317 ~ 27882311 (+) True G98770
TU133272 lncRNA upstream 346774 27855676 ~ 27859123 (+) True G98766
TU133269 lncRNA upstream 356959 27848733 ~ 27848938 (+) True G98763
TU133262 lncRNA upstream 373075 27832239 ~ 27832822 (+) False ncanb
TU133263 lncRNA upstream 545836 27659696 ~ 27660061 (+) False ncanb
TU133530 lncRNA downstream 94513 28312594 ~ 28318888 (+) True G98972
TU133553 lncRNA downstream 231462 28449543 ~ 28460166 (+) False LOC120565132
XR_005640191.1 lncRNA downstream 238912 28456993 ~ 28460210 (+) True LOC120565132
TU133552 lncRNA downstream 238912 28456993 ~ 28460166 (+) False LOC120565132
TU133572 lncRNA downstream 351567 28569648 ~ 28570858 (+) True G99007
XM_039810323.1 mRNA upstream 13767 28179468 ~ 28192130 (+) True chaf1a
XM_039811750.1 mRNA upstream 36242 28146653 ~ 28169655 (+) False si:ch211-129c21.1
XM_039811751.1 mRNA upstream 36242 28146656 ~ 28169655 (+) True si:ch211-129c21.1
XM_039810105.1 mRNA upstream 59572 28137273 ~ 28146325 (+) False LOC120564865
XM_039810324.1 mRNA downstream 121 28218202 ~ 28253130 (+) True ddr2a
XM_039810326.1 mRNA downstream 2700 28220781 ~ 28253130 (+) False ddr2a
XM_039810266.1 mRNA downstream 35214 28253295 ~ 28257604 (+) True hsd17b7
XM_039810267.1 mRNA downstream 35214 28253295 ~ 28257604 (+) False hsd17b7
XM_039811435.1 mRNA downstream 42974 28261055 ~ 28269639 (+) False serbp1a
XR_005640167.1 other upstream 59572 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 121510 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 1410158 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2186526 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2473720 25730258 ~ 25732177 (+) False slc35a3a
TU133723 other downstream 554307 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1445552 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2209422 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 2592437 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 3404617 31622698 ~ 31625796 (+) True G99791

Expression Profile