RNA id: XM_039810377.1


Basic Information

Item Value
RNA id XM_039810377.1
length 2310
RNA type mRNA
GC content 0.38
exon number 5
gene id LOC120565057
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13328617 ~ 13335098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGCTTGGACGGCTGTTAAATTTTAGCTGCTAACGTTAAGTGAAGTTTTAGTTGGTGTTCGTGTTCGTGTGTTCCTGTAACCAAAACTTCTGAGTAGCGAGCAGGTGCCCAGCTCAAGCAGAGTTATTCTTCACTGTGTGTGGCTATAGTCCAACATCCGATGGCAGAACAACCCTTGATAGAGTGGAGCAGTGGTCTCTTTGACTGTTTTGAAGATGTGGCGACTTgtTGCTATGGTTTCTGGTGCTGCCCTTGCCTTGCCATCACAGTTTCAGAAAGATTTGGAGAGAGCCGTTGTCTCCCATTATGTGACATGTGCACCCCCGCCATTACTGCATGTTGTGGGATACCTCTGTGTCTGCCGCCTCCAGCCGTCCTGTCTCTAAGGGCTGCCATGCGAAACAGATATGGTATCAAGGGTTCTCTCTGTAAGGACATTGCAGCTGCCTGTTTCTGTGGGACGTGCGCCTGGTGTCAGATGCATCGTGAGTTAAAACATCGCAAAAAAACTCCCACCGTCATCGTCATGCAAAATCAAGTCAATTTCCAAATGCAGCCTGCTCCTGTGATGATGATTCCTGGATACCCGCCCCAAGCTGGTTTTGTGAACCAACCAGGAGGCTTTGTGATGTCATCCTGAGCTCTGTGGcttcttgtttgtgtgttgttgtcttCTGAAGGAAATATTATGCAGCTTAGATCCTActagtgtttgttttgttacacCAAAGACAAAATGTAAGTGTATGTCTATGAGTGAAAACCAAAGTAGTAATCACAGTGATTTGTGTCCCCTTGGCATCAGAGTATGCTGAATCCGTTTCAGTCTATTAATAATTATGACAATTATTGTTCCAAAGTCCTTGGGAAAAccccttaattaaaaaaaaaatgttgttcatTTACAGCCACCATGGGCATCAGGTCAAGGATGAAGGAGATAATTGTAGTCCtttaaaatctttatttataattaaagaaataataaagaTGTATTAGGATACGAACTACAGTACTACTCAGCAACATCACAGTGCAGTTTATCCTAAAGCACAGCAGAGGGCACTAACGTTATATGAACACAAATTAAGTCATCCATCCATTGCAATCCTCCTCTTTGGTAAAATAAAACGCTTTGACAACTTATGCTAGTAAAGACCTACTACTAAAGATTTTGGCACTAAAATAGACCAAAAACTTATAAAAAgccacacaaatacacatattcTATTTGATGGCCATGTGGTCTTAATAAGCATACTAAACAGCTAGCATCTTAACTATGTACATTAAGAGATTTTTGCAGTGCAATCTAAAAATGAAGTATATACagtttttacataaataaatataaaagctACAGTAACTTACTTTGATGGAGTCACACACTGCACAAAAGCAACAACTCGAAGGAAGACCACACTACACACAGAACAAGAACACTGAACATGTAACACTCTAAGGTGATGGGTTCTAGGTGGttcagacagaaacacaatgtGACAATCAGAGAACATATacctactgtacatacagttGCTCGGGCATTTTTTAACAATTGTAGTTTAATTACAGTGATACTTGATCATACAGTTCCACAAATAGATATACCGGATCAAAACTtccatttatattaataatacttattGACTATCGGCTCAAACTATTTTAATTTTAGTCTCAAGATTCCCTGTTtataaaagaagagaaaataatTCCTAATTCtatattcttttcctaaaccttgTTCTACTGAATGCCACCTCTTCATGATGAAGTGCTTCTTTGTGAGATTAGCCTACATCATAGCGCCCCTTAAATGACTATATACTGTAAGCATACCTGTTACTGTTCTGTCTGTTTGTGGGCAAGTTCTATTCACAGAAATGTAACCAAAGAATAATagataaataacaataaatagaAGAAATTCACAATTCAGAGATTTCTTAAAGATGAAAGAAAGCTTGTCCACCAAGAAGTTTACAAAACCAAGGGCACAAAATATCTTCTAGGCActctcatttcattttcatttcagagagaaagagagagagcattcctattggctgttctctGTGAGTgagattttgtttgtttttttagtgaTGTGAAAGCTGCTGTGTTCTTGCTAACTTCAATTGGATAATGAAGAAATCCACCCAGCTTTAAACTGTGACCCTACTGTGTAATATTCATGGTCTTATAAGTTCTATTTTCTGACCTATtgttatacattgttttaatttttcatcTTGTAATGTTTCATGGTTGAAATAAGAAAATGATAATTAAATTCTTattcttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128185 lncRNA upstream 181822 13146305 ~ 13146795 (+) True G95040
TU128168 lncRNA upstream 216297 13107689 ~ 13112320 (+) True G95027
TU128143 lncRNA upstream 228279 13098787 ~ 13100338 (+) False raver2
TU128141 lncRNA upstream 332963 12995235 ~ 12995654 (+) True G95002
TU128136 lncRNA upstream 462366 12865912 ~ 12866251 (+) True G94997
TU128265 lncRNA downstream 636 13335734 ~ 13342098 (+) False LOC120565776
TU128266 lncRNA downstream 636 13335734 ~ 13342098 (+) False LOC120565776
TU128278 lncRNA downstream 37346 13372444 ~ 13375668 (+) True LOC120564967
XR_005640173.1 lncRNA downstream 37375 13372473 ~ 13374348 (+) False LOC120564967
TU128288 lncRNA downstream 55725 13390823 ~ 13399617 (+) False LOC120564965
XM_039811998.1 mRNA upstream 7920 13317776 ~ 13320697 (+) True LOC120565891
XM_039811888.1 mRNA upstream 23383 13293866 ~ 13305234 (+) True ttc22
XM_039811887.1 mRNA upstream 23383 13300485 ~ 13305234 (+) False ttc22
XM_039811889.1 mRNA upstream 23383 13300485 ~ 13305234 (+) False ttc22
XM_039811755.1 mRNA upstream 70056 13211481 ~ 13258561 (+) False lepr
XM_039811793.1 mRNA downstream 672 13335770 ~ 13341951 (+) True LOC120565776
XM_039812029.1 mRNA downstream 21274 13356372 ~ 13359125 (+) True LOC120565910
XM_039812047.1 mRNA downstream 32196 13367294 ~ 13369007 (+) True LOC120565922
XM_039810237.1 mRNA downstream 44300 13379398 ~ 13382747 (+) False LOC120564964
XM_039810238.1 mRNA downstream 55731 13390829 ~ 13399744 (+) True LOC120564965
TU128204 other upstream 108245 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 228172 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 1884084 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 2079970 11248575 ~ 11248647 (+) True trnam-cau_8
TU127615 other upstream 2380371 10946976 ~ 10948246 (+) False si:ch211-162e15.3
XR_005640172.1 other downstream 44300 13379398 ~ 13382744 (+) True LOC120564964
TU128764 other downstream 1284260 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 1475270 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 1475270 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 2985396 16320494 ~ 16341048 (+) False kdm4b

Expression Profile