RNA id: XM_039810382.1


Basic Information

Item Value
RNA id XM_039810382.1
length 4011
RNA type mRNA
GC content 0.56
exon number 20
gene id tle2b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23913948 ~ 23998384 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgcgtgtgtgtttgtgtgtgtttgtgtggctgtGTAACCGGTGGAGGGCAGAGGAGTGGAGGGCCAGGGGACTAACCTGGCCATCAAACGGACTGGAAGCCTCTCCTCTCCTGGGATCATGTACCCTCAGGGTAGGCATCCGGTTCCCTTACAACCCGGCCAGTCTTTCAAGTTCACAGTCCTGGAAACCCTGGACCGTATCAAGGAGGAATTCCAGTTCCTCCAGGCACAGtatcacagCCTGAAGCTGGAGTGTGAGAAGCTGGCCAGTGAGAAGACTGAGATGCAGAGGCACTACATCATGTACTACGAAATGTCCTACGGTCTCAACATTGAGATGCACAAACagGCGGAGATTGTCAAGCGTCTCAGTGCCATCTGCGCTCAGATCATCCCTTTCCTCTCTCAAGAGcaccaGCAACAGGTGGTCCAAGCAGTGGAAAGGGCGAAGCAGGTCACCATGGCTGAGCTCAACGCCATTATCGGGcagcagcagctccagcaccTGTCTCACCATGCTCCTGGCATTCCTCTGACGCCACACCCATCAGGCCTGTCCCTGGGGGCGGGGAGCTCAGGGCTTCTTGCGCTGACCGGGGCCCTGGGGGTCTCGGCCCACCTTGCCTCCAAAGATGATCGCAACCACCTTGATCCCGACCATCTCAGAGAGGGAGCACCCAGCAGGAGTAAGTCAGTGTCATCAACAGACAGTCAGCCCACTGAGGAGCGCCAGGGCCCATCAGGAGGCTACTCCTCCTCGCAGGGAGGAGCTGAGGCAAAGAGGAGGCGCTGTGATGACAAAGAGCCCCTTCCGCCACACTcctatGACAGTGATGGAGACAAGAGTGAAGACAATCTCGTGGTGGACGTTTCCAATGAAGAGCCTAATTCTCCTGTGGGCAGCCCTCCTCACTCCCCCCACGGGAACGGGTTAGACCGGGCTCCTACCCTAAGGAAAGAGCTCCCGGGCTCGTCAAGCACAGGAGAGGCTCCCTCCACCCCAAACCCCCGCAGCCCCACCCCAGGGAAAGGCAAAGACCCTGCACAGATGGATAAGTCCCAGTCTCCGCTGTCCAAGTCTGGCACCCCATCCCCGTCCCACCGTGAGGCCCTTACCCCAGGAGCCCCAGGAGCCCCTGGTCCCAGCACCTCCTGCCTTCGTCTGGTCAGCAAAGCAGCATCCAGCGCAGACCCCCTTGCTCTCCGCAGTCCCATGTCTGTGCCCCCTGGTTCATACCCAGCTCATTTTGGCGTGGTGTCCCACGCAGGCCTGAATGGGGAGCTGGCCAGCCCAGGAGGTTTCGGTGGGGCTCTAACTCTCTCTCCACAAATCAGCGCAGCAGCCAGTGCCTACTCCCGAAGCCCCATGGTGGCGTATGACTCTCGGTCTCACCTGAGGGCACCAGGGCTGTCCTCTTCTCTGCCTGGTTCCTCTGGCGGCAAGCCCGCCTACTCGTTCCACGTGAGCGCAGACGGCCAGATGCAGCCGGTGCCCTTTCCCCCTGACGCCCTGCTGGGCCCGGGAATCCCTCGCCACGCCCGTCAGATTCACACCCTGAACCACGGAGAGGTTGTGTGTGCCGTCACCATCAGCACCTCGACGCGCCACGTCTACACCGGAGGCAAGGGCTGCGTCAAGGTGTGGGACATCAGCCAGCCTGGAAGCAAGAGCCCCATGGCCCAGCTGGACTGTCTGAACAGGGATAACTACATCCGCTCCTGTAAAATCCTCCCTGACGGACGGACCTTGATCGTCGGCGGGGAGGCCAGCACGCTGTCAATCTGGGATTTGGCCACGCCCACTCCCCGCATCAAAGCGGAGCTGACGTCGTCCGCTCCCGCCTGCTACGCTCTGGCCATCTCCCCTGACAACAAGGTCTGCTTCTCCTGCTGCAGCGATGGCAACATTGTCGTCTGGGACCTTCACAACCAGACGCTGGTCAGGCAGTTCCAGGGCCACACAGACGGAGCGAGCTGCATCGACATCTCCAACGACGGCACCAAACTGTGGACGGGAGGGCTGGACAACACAGTCCGCTGCTGGGACCTCCGAGAGGGACGCCAGCTCCAGCAACACGACTTCACCtcgcagATCTTCTCTCTGGGCTACTGTCCGACAGGCGAGTGGCTGGCTGTGGGAATGGAGAGCAGTAACGTGGAAGTTCTGCACGTCTCCAAACCTGACAAGTACCAGCTGCACCTCCATGAGAGCTGCGTTCTCTCTCTCAAGTTCGCCTACTGTGGCAAGTGGTTCGTGAGCACAGGAAAAGACAATCTGTTGAATGCATGGAGGACACCATATGGAGCTAGTATTTTCCAGTCCAAGGAGTCCTCGTCTGTGCTGAGCTGTGACGTCTCCCCGGACGACAAGTACATAGTGACGGGCTCCGGGGACAAGAAGGCCACTGTGTACGAGGTGGTGTACTGAGGTCCGGGACAAGATGGGAAGAGACAGGACGGAGATTTTTCTGGTGGGTTTTTTGGAGGATAGGGGAGGGGCGAACCAGTTGCCCCGCCAACTGCTCCTGATCCTCGTTAAAtcagcaacagcagcacctCCGTCTCAGTCCTCTGAGTCCTCCTGACCCTCACCCCTAATACATCACCCCCTCTCCCCCTTTTTCCTGTGATATAAGCTACTGTGGAAGCTCCCGTAcgcctcctccctcctccccccttccCCTTTCAGCCCAAGGATGAGGCATgatagcagagagagagaggcagaaaggGAAGCAGCAAGATAAGAAGGACAAAGGAAAAGGGCGGTGGAGCATAAAGATAAAGTCGGGAGGGAAAGAcaagaaggaggagagaaagcgAGAGTGCGGAAGGAAGAGAAATGAAAGGGAGcatgaggagagggaggaggaggaaagaggcaGGGTAATTAGGGCTGTTTCCTGATTAAGAGCTCAGTGGAAGGGAGGCCCCCAGAGGAGGCGCGGAGCGGCACTGTGGGAGCGCCAGCCGGGAGCACTGATACCACACAATCGATTCATTAGCCAGACAGTGGAAGCCTTAATGAGGCTGACGCCGCAGCTCGCTCTCCCCAGCGAGAGGTGTCAGGAGCTCGGGAACGATGACGCTCCGAGATGGAGGGGGTCGCTTCAGATATCCACATACACTGACATGAAACGTAgacctgctcacacacacacacacacacacacacacccacaaacacacacacaggcgcacgtCATCAGGCAAAAATATACACTCTCGGATACACCCCCTTGAGGTGATCGCAAGAAGagagaaacgcacacacacacacacacacaacacacagagcacCCAATTAAACATTCATCGCAGCGCTCCCCGTCTCACTGCTTAATATCTATTTTATTTTGGTCTGACAAAGGCAGCGTCTAATGAGCAGCGGAGTCAATGGGATTCTCCCAGGgcccagagacacaaacacagaacatcAGCCGAGCTGTTCCCTCTAATTCCTCTGGATTGTTCTCCTGACACCGGGCGCTGCACTCACTCTCATTAAAGGCACTGTCAGCTAGATGAAGTAGCAGCACGCCAACTTCACTGTAAGGCAGACAAGAGGGCAAATTAACACCACCCGATTACGCTATCATCAGCAGCAAACTAAGCAGCTAATCCGAATCCTTTTCAATTTTATGCAACTAGTTGCGGTTTTTCATTTACACACCAGATGAGAATTACATGTTTATCAAAGTCATTGTCTCGATCCCCACCTGCCTGCTGATGTGCTAGTGTTCAAAGTGGCTAAATCTGGTTCGGTGAGCTATTGATTGCTATTAATTGAGGAAAATACACTTATAGATTCAAATTATTGATGCCACTCTTTCGCTAAGTATGAAGCAGCCTGCTAACCGAGCtgagcataaagactgaaaacggggaaacagctagcctggctctgtccagaaGTAACAAAaactgcctaccagcacctctaaagctcatgATTAACATGTTAACATATCTTGTGTTAAATCAACAACTTGCTGTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131820 lncRNA upstream 200629 23712097 ~ 23713463 (+) True G97679
TU131819 lncRNA upstream 200629 23713147 ~ 23713463 (+) False G97679
TU131792 lncRNA upstream 208808 23704936 ~ 23705284 (+) True G97657
TU131791 lncRNA upstream 263636 23648343 ~ 23650456 (+) False cdc34a
TU131789 lncRNA upstream 265893 23647873 ~ 23648199 (+) False cdc34a
TU131849 lncRNA downstream 17 23998401 ~ 24000025 (+) False G97702
TU131850 lncRNA downstream 17 23998401 ~ 24000222 (+) True G97702
TU131851 lncRNA downstream 17 23998401 ~ 23999954 (+) False G97702
TU131884 lncRNA downstream 92159 24090543 ~ 24091319 (+) True G97728
TU131961 lncRNA downstream 205981 24204365 ~ 24208101 (+) False cks2
XM_039811020.1 mRNA upstream 33926 23836670 ~ 23880166 (+) False tle5
XM_039811018.1 mRNA upstream 33926 23836673 ~ 23880166 (+) True tle5
XM_039811019.1 mRNA upstream 33926 23836673 ~ 23880166 (+) False tle5
XM_039811186.1 mRNA upstream 78438 23791060 ~ 23835654 (+) True LOC120565386
XM_039812449.1 mRNA downstream 135280 24133664 ~ 24137514 (+) True s1pr3a
XM_039812450.1 mRNA downstream 135280 24133664 ~ 24137514 (+) False s1pr3a
XM_039811047.1 mRNA downstream 169974 24168358 ~ 24183028 (+) True ankrd24
XM_039811050.1 mRNA downstream 205957 24204341 ~ 24208141 (+) True cks2
XM_039810519.1 mRNA downstream 280012 24278396 ~ 24281064 (+) True foxe3
TU131697 other upstream 436274 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 592183 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1337890 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1338944 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1339168 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 783534 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 853917 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 869633 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1534441 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1731874 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile