RNA id: XM_039810386.1


Basic Information

Item Value
RNA id XM_039810386.1
length 5324
RNA type mRNA
GC content 0.51
exon number 20
gene id btbd8
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30262977 ~ 30311025 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTCCTTCGTTTTGTGAACCCTTTCCTAGTGGGTGGCGAGCAGCGTGCAGTGGCGGTGATGTCAACAACATTGGCCAAGAACCTAATGAACCATGATCACCACAGAGGCTGCAAGAGAGTTCCATGCCAAAGAATGCAAATACAAAGAGCAGCTGAAGAGACGTTTATCGTCAGCCTTATCTGCAGACCTTAACAGGTTGCtgcaggaggagctggaggcaGATGTTTCTCTTTATGCTGGGTCAGGCTCGCTTCAAGCACACAGAGCCGTACTGTTGGCCAGAGCTCCTCATGTCCTTCAGGGAGAGACACATAAAGATCCTACCATCGTTCATCTGTCTGACTATGAGCTGTCCGGGTTGAAAGATTTCCTCAGGCGACTGTACACAGCAGACCAGAGCATGCGCTCGTCTGAAATAATCCCAGACGTGGAGGGCTCAGTGCCAGAAAGTACACTGCTTGTTCCCAATCCGGCAGACCATAGTTCCACTGACTCAGATGTTATTGAGTCAGCATCGGGCCTTGGAGCTGACTTGCTGGATCTGTACCAGAGGGGAGAGCAGTGTGATATCACCATACAAGTAGCGGAGCAGGTCTTCTCCTGCCACAGGGCAATCCTGTGTGCGCGGTCTCAGTACTTCCGAGCGATGCTAAGCGGGAGTTGGATGGAGAGCTCCAGACAGTGCATCACTCTGCAAGGTTTAGGGCCAGATGAGATGGAGATCCTGCTCCAGTTCATGTATGGGGCAATTGTGGATCTGCCACCTGGAGCCAGTGCCAGTCAGGTGGTGTTGGCAGCCGACATGTTGGGTTTAGAGGGGCTGAAGGATGTGGTGGAGATGGTTCTCACCCGAGACTACTGCCGCTTCTTCCCAAAGCCAATTGACGGTGTTCAGAGAACAGTTCTCGAGTGTCTGTCCCTCACGCATGCCTTAGGCCTCCAAAACCTCCACATGCTGTGTAAGAGGTGGGTTGCTGATCATTTTGTGAAGACCTGGTGCGAGAGAAACTTTTCCCTGTTGTCCCCTGAGCTTCATGTAGCCTGTCTAACAGCTGTAACTGAAACCATGACTGTGCAGAACGCAGTAACCATGCTCTGTGGCACTGAGCAATTGATTGGCAGTCTCCCAGAAGTCAAGTGGGCCCAACAGGTAAGGAGTCTCGCCACAGAGCTTCAGGAGGAGAGCCTTCATGTCATTGTCCAGCATCTGCCCAGAGTCATCCACACTCAGGCCTTCCAGGACCTTTGCAGGAGGGAACAGTTTACCCGTGAGCCAACGTTGTTGAAAAAGCTGTGTTCGGCCATCAGAGAAGGTGTGACCGTGGACAACTGCTGTGATCTTTTTGCTGCTGTGTACAATCTATGTGGAGATGACATGGAAGAGGACTCTCTCCTGGAGAAAGGAGAGCAAAGACAAGAGAAGCCGTTCAGGCAAGAGATTTGTACGCTGCGCGGTCGGCTCTGGACTTTCCTGCTTCAGACCTTTTACGCGGTCCGCCACACACAGGGATGGGAGACCCTGTCTTCCAAACACAAAGAGAGGATACTAGCAGATGCTATTGATAAAGGGGACAATCGAAGACTTGGTAAAAAGCCTGTATTCACTAGCTCAcagtcAAGGGCTGTAAAATGCCCTTCATCTGCACCTGAGAGTCCGCCTGTGCACAGGACCCAGAGGGTGTCCGAAATTTCTTCCTCCCGTAGTGCTGCATCAGCCATGAAGTCTGATGGACTGGGGACAGCTAACAAACCAGGAGATGGTCACACATCCAAGGCAAAGAATGTGAAAAAGCCTGGAGACCGGAGTGTAGCAGTGAAGGCAAAGACCGCATCAGCTGGCTCACCAGTTGTCAATGGCACAGGAGCTGCAGGGCCCAGGCGGGATGGAGCCAGTGCCAATGGCCCTAGAAGCTCTCATGGGGCTAAAGAGCAAGAAAAGAAGCCAAACCCAGGTGCACGGCCTAAAACATCTCCCCCGAGCTGCACATCTACAAGCCAGACGGCGGTAATGAAGGCTCAAAAGAGCTCCACAGGAAAGACTGACATTGTTGGCAGCACCCAAGCTCAGCCCAGCGCTTCATCCACATCAGGCAGCGCCTCGCCAGAGAATGGTGCCAGCAGCCCTCGCAACGACACCCACTCCATCCCAGgTGCAAAGCCCAAACACCAGGCGAAGGCGGTAAACAAATCCCCACTGACAAAacctcctcagaaatcagaTACAACGAAGATCAGCAGTCCTACCAATAAGTCAAGTGTGAGAGAAAGTGTCAAAGTTAAGACTGGTGCAGCAGAGAAAGCATCTACTGGAGTGACAGCAGCAAGAGCAGACACCAAGGGAAGAGGCACACCAGACCACCATGTCTCTAAGCATGGATCCTCCATGAAAAAGCCAGCATCCCCTAGGAAAGAAGACGGCAAGGACGGTTTGAAATCCTCAGCACCAGACAAAGCAGCCGGTGAAGCTCATAAAAAGAAGATCACAAAACCCGTTTCGGCGACTGGAGCCTCAGCTAAATCCAGTGCTAAACCACCAAAAGCATCTTCAGCCCCCTCAAAGCAATCTTCAGTAGGAGCTGCCAAGTCTGGACTAAAGCCAAAAAGTACTACTGAATTATCAACGGAGAAAGCTTCTCCAAAATCCGGAGCTTCCAAAACCTCAGCTGCATCTGCCTCCAAGAAATCAGGAACTAAAGGAAAAGAGACAGTGAATGgtaaaaattcaaactgtaaaactgAGCTTGCTCCAACTGAGAACACTTGTGACGTTGCAGTGCATGAAGATAGTACAGATGTAGCGCTTTCTGGCCGGCCTGCAGTGCGCAGAACACAGGTAACAAGCCAGGGCGGAGGGGATTCACTTAGCCTTCAACTAGAATCAAGCCCTACGAGTCAAAAGCCTGAAATACAGTCAGGAAACACTGAGAGAGCACCAGCAGCAAACAGAATCTCCCATGTCATATGTGCTAATGCAGACACTTGCAAACAGACTGAAGGGAGTAAAGTGAAACAGTCTCCAAGCGGTGTCATCCCCGCTCACATCAGCGGAGGGCAAGTTAATGAGGTCCGTTCCCCAAATTCTCCAAGAGACACTGAACGCCCTATAGACACCCCCTGCAGCATGGGAAGCACTGACACTCCCTTAGAGGACTCCTGGAGCGGCATCCACCATCAGGTGAGCCCACAGTCTGAGACTGGCAGCACACACACCACTTCCTCTGACGACATCAAGCCCCGCTCAGAGGACTACGACGCAGGAGGCTCGCAAGACGACGACTGCTCCAACGACAGAGGTGTTTCCAAGTGTGGCACCATGCGCTGTCATGACTTCTTGGGTCGCAGTAGTAGTGACACAAGCACCCCAGAGGAGTTAAAGATGTACGAAGGTGGGGCGGGGTTGAGAGTGGAGGTTCGGCTGCGCGGACGAGAAGCAGAGACTACCAGCGAGGAGGAGGGAGTAAGACGGCGTCCTCGTTCCTGGTTGCATAGAGACGAGGTTCCTGTTGAGGAGGAGCACTCTGAGGTCGAGGCCACGGTGACTATAAAAAGCGTCCCCGACCACCagctcttctcctcctctgaggaggaggaagatgaagatgaagaggcAACGGAAGATGAGAGGTCTGAAGTTGAGGTGATTCCAGGTCGGGCTCCGCCGCCGCCAACTGAACCCTCGCCCCACTTTCAGGGGATCGTCAACCTAGCTTTCGATGATGACGGTGTAGACCAGGAGAATGACCAGCCCGACTACCAGTCGTCTTCTAACTTCCGTCGCTCAGTGTTACTCTCTGTTGACGAGTGTGAGGAGTTGGGCTCAGAAGAGGGCGGCGTCCAAACGCCACCTCAACAGCCCAATGACGCTGTCACTTCCTGTGATGTTTTTGAAACTGACTCTACAGCTCCTCAGCGCAACTGTGCCCCTTCCGGTGACAAACCGGAGCACCTGACTTGCCATCTCGAAAGCGCAGGCCTGAAGGGCAAACAAAACGACGAGGAACAGGAAGAAAAGTCCCCTGTGTTTCTTACAGAGATCCAGGAGCCCGTGCAGGATGAGAGTAATCACATCCAGGTGGATGGGGTGAAGTCCAGTGGCCCTCTCCTGGATGCTGACACCAAAGTCCTCCCTCCCCAGGAGCGCCCATGCCACCTAGATCTGCGGCACACTGAACAATACAACGGAGGGCTGCGCAAAAATCACACCAATCCCTCAGAAAGCAAGAAAGCTGATTTACATCTAGACTTAAATGAGCCTCAGCTGAAAGGGGACTCTCCTGTACATGCTGCAGAATCTCCAGCAGAAAAAGAAATCCTGCTGCACCATTACTGGGGGTCTATCCCGATGCAAACATGtacattattttgttttcaatatCAAACAGTGAACAGGGACAATGGTTGTGACAGATTGGATCAAACCTGCAAACATGACCGCCGACCATCCAAAGCCCTCTCTCCCATTTACGAGATGGATGTTGGAGAAGCCTTTGAGCACTGCTCGGACAAGGACAGGAATGTTAAACTGAAGGCAGAGGAAGAAAATCAAAGAGGGGACGATGACAAAAGCAATGAGTTTGCAGAGCGGGATTGGAGCTTGCTTAGGCACCTCCTCTCAGACCACGAGTCCAATCTGGGCGTCATAAACCCTGTGCCTGAGGAGCTCAACCTGGCCCAGTACCTTATCAAGCAGACACTGTCCCTGTCACGTGACTGCCTGGACTCGCAGGCCTTCTTGTCCCCAGAGAAGGAGACCTTTAAACGCTGGGCGGAGCTCATCTCACCCATGGAGGACTCCTCCACCAGCATCACGGTCACCAGCTTCTCCCCAGAAGACGCTGCATCTCCACAGGGGGAGTGGACCATCGTGGAACTGGAAACACATCACTGACTGCACAGAGGAGAACATGCCTGACAGTTGACACCTTTTCTGTGAACTTTAAACGTCTACATCAAATTTGTCttaatttattataatttataatcatattatttctctctttttgacatttctttccTGGACTCTGCAGAACTCTGGACTTTGCAGCAGTTTATTTGCATTCCCCATTATGCCCTCAGTGGACTGTTTCTTGACACAAATGGGCTGTTATGCATGCTGATATTTTTGTATGTCTGATTGTTTAATTGATGTTGCTTTGAAGCTCTAGAAAGGAATATAGagtaagaaaaaaacatttctttctcATGGCAGTCTTGTAATAATATGGTTGACTGAAGTTtcttaaagaaaaataatagtGGCCTACATGGCTTGCATTTAGTGTCATATTGAAAATAAAGGTTTGTGTTTCTTGAAAAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134013 lncRNA upstream 71137 30185707 ~ 30191840 (+) True G99368
TU134001 lncRNA upstream 222082 30039842 ~ 30040895 (+) True G99356
TU133977 lncRNA upstream 384856 29877872 ~ 29878121 (+) True G99338
TU133968 lncRNA upstream 487897 29774317 ~ 29775080 (+) True G99329
TU133966 lncRNA upstream 502611 29760043 ~ 29760366 (+) True G99327
TU134036 lncRNA downstream 33304 30344329 ~ 30345174 (+) False G99379
TU134066 lncRNA downstream 77796 30388821 ~ 30389639 (+) True G99406
TU134141 lncRNA downstream 151535 30462560 ~ 30463389 (+) True G99461
TU134171 lncRNA downstream 210620 30521645 ~ 30522066 (+) True G99488
TU134177 lncRNA downstream 217801 30528826 ~ 30529088 (+) True G99493
XM_039810148.1 mRNA upstream 1670 30245804 ~ 30261307 (+) True ephx4
XM_039812338.1 mRNA upstream 18059 30202205 ~ 30244918 (+) True brdt
XM_039810394.1 mRNA downstream 177 30311202 ~ 30314472 (+) True LOC120565064
XM_039811588.1 mRNA downstream 86243 30397268 ~ 30403012 (+) True LOC120565665
XM_039811702.1 mRNA downstream 116486 30427511 ~ 30429256 (+) False si:ch73-389b16.1
XM_039811703.1 mRNA downstream 139676 30450701 ~ 30460738 (+) True scinla
XM_039812227.1 mRNA downstream 166806 30477831 ~ 30481380 (+) True dr1
TU133929 other upstream 597887 29663633 ~ 29665090 (+) True G99297
TU133723 other upstream 1488467 28772388 ~ 28774510 (+) False LOC120565530
XR_005640167.1 other upstream 2116652 28137269 ~ 28146325 (+) False LOC120564865
XR_005640192.1 other upstream 2178590 28027972 ~ 28084387 (+) False pip5k1ca
TU132947 other upstream 3467238 26792687 ~ 26795739 (+) False micos13
TU134127 other downstream 116478 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 499493 30810518 ~ 30811236 (+) True G99545
TU134544 other downstream 1311673 31622698 ~ 31625796 (+) True G99791
TU134559 other downstream 1318791 31629816 ~ 31631501 (+) True G99803
TU134550 other downstream 1322540 31633565 ~ 31643446 (+) False LOC120564930

Expression Profile