RNA id: XM_039810430.1


Basic Information

Item Value
RNA id XM_039810430.1
length 3395
RNA type mRNA
GC content 0.56
exon number 10
gene id arhgap39
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 34528568 ~ 34661669 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCTTGACACTGGTCTGGGAAGGAGTGACTCGTTGACTGCGGCGACCGCAATTTCGGCAACATGGGAGCCGTTGTGGGATTTATTCTAAACGGATTTTAAGAACCGTCCGGGGAAAATGGCAGAGAGGTTGGAGTGGGTGGAGATCATCGAGCCGCGCACGCGGGAGCGTATGTACGCCAACCTGCTGACGGGTGAGTGCGTGTGGGACCCGCCGCAGGGCGTTTGCATCAAGCGTACCGGTGACAACCAGTGGTGGGAGCTGTTTGATCCCAACACCTCACGCTTCTACTACTACAACGCCTCCACCCAGCGGACAGTGTGGCACCGGCCCCAGGCCTGCGACATCATCCCCCTGGCCAAGCTGCAAACCCTGAAGCAGCACACGGATGCCACCAACCCCCGTCCTGCaggtggtggaggagggagggcgtcagctgacaacagcccagGACGTAACAGCGGGGTCAGCCGAGAGGGaagcacctcctcctccctcgaTCAGGAGCTTTCTGAAAAACAGGGcaacagagaggagacagacaggACTTCTCCCTTCAGGTGGAACACTGGTACCAAGGAGCGAATGCTAATCAaggtgacagacagagagccCAGCTTCCTGGCCCACCAGGGAAATGGCTATTCCCCCTGTGACCCCCCCACCCCTGGTCCTCCTGGAGGTAGCACCACCTCACGAACCCGCCGATCATCTGGAGGTAACGCGCCTCCAGAACCCGACGGCTCCCCCATTCTCTACACCGACCGCCGTCAGTCCCCCTTCATGAAGCGGGCTGAGCTGGGTGGCACCGGCACACACCGCCGCTCCTCAGCCGACTCGCAGCCTCCCTCGCCCCGCTACGCCTATGAACCCCCGCTGTATGAGGAGCCGCCCTCGGAGTACCAGCCCCCTCCCATTTACGAGGAGCCTCCCACTGACATGCACCTCTCTGACTCCTCCTTCTACGGCACTGGCAAGTCACCTGCTCGCAAGTCTTCGGCCCCCCTCTATCACTCCCCCAAACAGGGCCAGTCGCCCTACGGCCAGCTGGTTTTAACCAGGCAGAAGTGTCCCGAAAAGACCCAGAGTCTGGAGTACAGTCCCGTGGGGAAGGAGTACGTCAAGCAGCTTGTGTACGTGGAGCAGTCGTCTTCCAGCCCTCGCTTCAAGACCGCCGACCGCCTGCTGCGTTACGGCACTACAGGGGGCTATGGTGGCTCATATGGGGGGTCCTATACTCTGCAGCACAGCCAGTCTCTGATCAGGGATCCCCGCCTACTCCTGGACTACAGTGGGGAGGGCGGAGAAGGAGGCCAGAGGTTGCTTTATGAGGACTCCATATCCTGGACGTCCAGTCAGACCcactccctctcctcttcctctacagGCGGCCCTGGGGCTTTCTCTCCCGGGGGTAACCGCAAACGTAAGAGCCGCAAGCCGTCCCTCCCCCAGGAGCTGGCGCGCTGCGTGGGGCCAGAGGGGGAGCTTGCAGGCACGGCATCGGAGGCGATGCTGGCCCAGGCCAGGCTGGCGTGGGAGGCCCAGCAGGTGATGAAACAGAGGAGCAGTTGGGACTCGGGGCAAGGCGGGGGGGCGGCCCAGGGCGGTGGCTCCAAAGACGGCTACGAGAGTGACGGGGCGCTGCCTCTGCCGTTACCGGGACCGGTGGTGAGGGCGTTCAGTGAGGATGAGGCGCTGGCGCAGAGCGACGGCCACCACTGGAAACGCAGCACCTTCGATCGGCTGGGCTTCCCCCAGGCCCTGCTGGAGAAAAGCCTCTCTGTCCAGACCAGCCTGGCCTCCCCTGAGCCTTACCTCCACCCTTCACAGTCGGAGGACCTCGGAGCCTGTGCCCAGTTTGAGGCCAGCCGAAATGCCAGGAATATGATGCCAAGCGCCAGCTGTGGCATTTTCCCAGAATTCACCCTGAGAAAACCCTCCTCAGAGACCGACATCGAGAACTGGGCGTCCAAGCActtcaacaaacacacacagGGTCTGTTTAGAAGAAAGGTGTCCATTGCCAACATGCTGGCCTGGAGCAGTGAGCCCATCAAGAAGCCCATGATTGTGACCTCGGACCGCACCGTGAAGAGGGAGGCGGTGGACATCTTTAAACTCATTCAGACCTTCATGGGAGACCGTCGCTCCAAGGCCGACTCCCTCGCTGTGGCTCTGGAGGTGGTGGTGCGTGGGTGGAGTAACCAGGGTCTGCGCGACGAGCTCTACATCCAGCTGTGTCGCCAAACCACAGAGAACTTCCGCTACGACAGCCTGGAGCGAGGCTGGGAGCTGATGGCCATCTGTCTGGCCTTCTTCCCCCCCACGCCCCGTTTCCACACCTACCTGGAGGGCTACATCTGCCGACACATGGACCCTCTCAACGACACCAAGGGAGTGGCCATTAGCAGCTATGCTAAATACTGCTACAGGAAACTGACAAAAGCTGCTCTGACTGGTGCCAAGAAGgGCGTGCAGAAGCCCTGTCTGGAGGAGATTAAGCACGCCAGGAATGCCATCTTCAGTCCCTCCATGTTTGGCTCTTCCCTGGACGAGGTGATGGCGCTCCAGAAGGAGCGGTATCCAGACAACCAGCTGCCCTGGGTACAGACCCGCCTCTCTGAAGAGGTTCTGGGTCTCAATGGAGACCAGACAGAAGGCATCTTCAGgGTGCCAGGGGACATAGATGAAGTCAATGCCCTCAAGCTGCAAGTGGATCAATGGAAAATCCCCACAGGACTGGAGGACCCGCACATcccagCGTCTCTGCTGAAGCTCTGGTACAGGGAGCTGGAGGAGCCTCTCATCCCTCACGAGTTTTATGAGGAGTGCATCAATCACTATGACAACCCAGAGGCAGCTGTCAATGTGGTGCTAGGCCTGCCACACATCAACAAACTGGTGCTCTGCTACCTCATCCGCTTCTTACAGgtaacatgcacgcacacacacacgcaaacacacatacacacaaacacatgcgcgcacacacacacacacacacacacacacacacacacttatagtACCAATaagtcatcgtatagtatgtttaaaaaaagtcaatgaTAACCAGTAGCAATTATAGTACCAATaagtcatcgtatagtatgttaaaaaaaaattcaaataaagtcatagtatactatttcaaaaaagtagtaacaaattcatagtatagtatgacgaaaaatacagtcatagtgtagtatgtcaaaaaaagtaagaaaatgtAATAGTGTATAAGAGtcataacaaagtcatagtataatatgatGAAATaagtcatcgtatagtatgtcaaatataaGTAGTAACAAAGTCATAGAATAATATgtcaaaagaagtcatagtatgtggaaaaaaatcatgttaaaaaaagatatagtatg

Function

GO: NA

KEGG:

id description
K20649 ARHGAP39; Rho GTPase-activating protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134962 lncRNA upstream 20966 34502564 ~ 34507602 (+) False G100159
TU134961 lncRNA upstream 24201 34502564 ~ 34504367 (+) True G100159
TU134967 lncRNA upstream 78053 34450281 ~ 34450515 (+) True G100161
TU134947 lncRNA upstream 224222 34304090 ~ 34304346 (+) True G100148
TU134936 lncRNA upstream 306446 34220662 ~ 34222122 (+) False LOC120565927
TU135013 lncRNA downstream 8574 34666482 ~ 34669040 (+) True G100199
TU135014 lncRNA downstream 8574 34666482 ~ 34677930 (+) False G100199
TU135031 lncRNA downstream 79599 34737507 ~ 34793890 (+) True G100215
TU135081 lncRNA downstream 191295 34849203 ~ 34849492 (+) True G100257
TU135083 lncRNA downstream 194405 34852313 ~ 34852518 (+) True G100259
XM_039811944.1 mRNA upstream 71612 34454381 ~ 34456956 (+) True LOC120565866
XM_039811945.1 mRNA upstream 71612 34454383 ~ 34456956 (+) False LOC120565866
XM_039811929.1 mRNA upstream 144541 34380747 ~ 34384027 (+) True LOC120565861
XM_039811410.1 mRNA upstream 434993 34066115 ~ 34093575 (+) False LOC120565538
XM_039812479.1 mRNA downstream 810103 35468011 ~ 35477553 (+) True hyi
XM_039812039.1 mRNA downstream 1015452 35673360 ~ 35678429 (+) True ddx10
XM_039812350.1 mRNA downstream 1041917 35699825 ~ 35723836 (+) True LOC120566096
XM_039812351.1 mRNA downstream 1041947 35699855 ~ 35737010 (+) False LOC120566096
XM_039812352.1 mRNA downstream 1041947 35699855 ~ 35721555 (+) False LOC120566096
TU134982 other upstream 21016 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 650237 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 1259408 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 1649953 32875382 ~ 32878615 (+) False nlgn1
TU134550 other upstream 2885122 31633565 ~ 31643446 (+) False LOC120564930
TU135393 other downstream 1569179 36227087 ~ 36228574 (+) False dsg2.1
TU135480 other downstream 1815630 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 1837576 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 1874818 36532726 ~ 36534539 (+) False smim24
TU135631 other downstream 2037529 36695437 ~ 36698869 (+) True G100671

Expression Profile