RNA id: XM_039810437.1


Basic Information

Item Value
RNA id XM_039810437.1
length 4441
RNA type mRNA
GC content 0.48
exon number 23
gene id clocka
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38317933 ~ 38344663 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCGACTCCAGTCAGTCTGCCTCTGTGCCATATATGCCTGAGCCCTGCGCAGTCAACCGTCAGCAGCGCCACTGGGTGTAGGGATATCCCGATGAAAGGGGAGACTGTTCGGGGTCAATAATTCACACGAGAAGAGTTTCCCACAGAGTCATCCGTATTGAGGTGAAGCGCTTACTTAATTAGCCATCACTCAAAGACAAAAGACTCAGATGTTGCTGCCATGTGCCAGTCTCCCACCCGAAGCAGACGAAGAACTCTGCTCATTGAAGACCCCTTTTCAACTTTCTACCCGCTGATTGGGGAAACTTTCAGTGACTCTCCTCCAAGACACAGAGCTCCACTGCCCCAATCACCACAGTGTGTCCAGCCACACCCTGCCTTCATCCAGCAGTAACTTCTTCATCGTCTCACAGGACTGGCTGTACTGTCAGTAAGGTTCGTCCCCAAATGTCTACCTCACGATTAAAAGACCCCTCTCCAACACTGCGACCCTAAACAGGATACAAAATGACCTCGAGCATTGACCGGGATGACAGCAGTATCTTTGATGGGTTAATGGAAGAAGATGAAAAGGATAAAGCTAAACGTGTGTCCCGTAACAAGTCTGAGAAGAAACGCAGAGACCAGTTCAATGTCCTCATCAAGGAGCTGGGCACCATGTTGCCGGGCAACACCCGGAAGATGGACAAGTCCACTATTTTGCAGAAGAGCATCGACTTTCTGCACAAACATAAGGAAATCGCTGCTCAGTCAGAGTCAACTGAGATCAGGCAAGACTGGAAGCCTCCTTTTCTTAGTAATGAAGAGTTCACTCAGCTGATGTTGGAGGCGTTAGATGGATTTTTTCTTGCAATCATGACCGATGGGAACATAATCTACGCTTCTGAGAGTGTGACGTCCCTACTAGAACACTTACCTTCTGATCTTGTGGATCAGAACTTGTTGAACTTCCTGCCTATGGGGGAGCATTCAGATGTGTACAAGGCTCTGTCCTCTCATATCATGGAAGGAGAGACACCGACGCCTGAATATCTGAAAAcAAAAAATCAGCTTGAGTTCTGTTGCCACATGCTCCGAGGGACAATCGACCCCAACGAGCCCCCCGTGTACGAATATGTCAAGTTCATTGGAAACTTCAAGTCCCTGAATAATGTGCCTAACTGTACCCGAAATGGTTTCGAGGGAGTGATCCAGCGATCGCTTCACTCTGCCTTTGAAGACAGAGTGTGTCTTATAGCAACTGTGAGGCTTGCCAAACCACAGTTTATCAAGGAGATGTGCACTGTAGAGGAGCCTAATGAGGAATTCACCTCCAGACATAGTTTAGAGTGGAAATTTCTGTTCTTGGACCACAGAGCTCCACCCATTATAGGTTACCTCCCGTTTGAGGTGCTGGGTACATCAGGATATGACTACTACCACGTAGATGACCTGGAGACACTGGCCAAATGCCACGAACACTTAATGCAATATGGCAAAGGAAAGTCCTGCTACTACAGATTCCTCACCAAAGGGCAGCAGTGGATTTGGCTTCAGACCCACTACTACATCACCTACCACCAGTGGAACTCCAGACCAGAGTTTATTGTCTGCACGCACACTGTTGTCAGTTATGCTGAAGTAAGAGCAGAACAGCGCAGAGAGCTTGGAATTGAAGAACTACAACCTGAGCTCACAGCAGACAAGCAGTCCCAGGATTCAGGCTCTGAGTCCCAGCTCAACACATCCAGCCTGAAAGAGGCTCTAGAGCGCTTCAACCACAGCCGGACACCCTCGGCCTCGTCTCGCAGCTCACGCAAATCCTCGCACACAGCTGTGTCTGACCCAGCTTCGTCACAGATGAAGCTTCAGGGAGACAGGAGTACACCAGGTCGGCAGTCTGTCTCTGCTGTGGAGATGACATCACAACGAAGATCATCTATCAGCAGCCAGCAGTCAATGAGCTCCCAAAATACAATACAGAACATGGCACCATCCATGGtttcacaacaacaacagcagcaacaacagcagcaacaaccacaacaacaacaacaacaacaacagcctcaacagcagcaacaagttCAGACCAGCGACCAATCAATGGTGCAGTTCTCCAGCCAGCTAGAAGTCATGCATAACCTGAAAGAGCAGCTGGAGCATAGGACCAGGATGATCGAGGCCAACATTCAGCGGCAGCAGGATGAGCTGCGACAGATCCAGGACGAGTTGCACAGAGTGCAGGGACAGAGCCTGCAGGGACAGAGCCTGCAGGGACAGAGCCTGCAGGGACAGAGCCTGCAGGGACAGAGCCTGCAGGGACAGAGCCTTCAGGGACAGAGCCTTCAGATGTTCTTGCCGAAAGGAGCCGGAGGACTGAATTTCAGCTCTGTTCAGACGGCCCAGGGGAACGCCTTGCAGCAGGGGGGAACCCTCAGCATGCAGGGCCAGGTGGTGTCTGCAGTGACTCTACAGAACGGCATACAGCAACAACATGCTGTCCAGCCCCAGCCCCAACCCCAGCAACAAACTCTCTTGCGGGAACAGAGCACAGCACTCTCACAGTCTCAGCGGCCGTCCCTCACTCTACAGCCTCAACAGAATCCACTGCCCGCGTCTCTGTACAACACAATGATGATCCCTCAGCAAAGCCCTGCTAACATGGTCCAGATTGCCACTACCCTGGCTCAGAATACTGGaccaaacgctgctgctgtGGCTACATTTGCACAGGATCGTTCAGCTCAGATAAGgtTTCCTGCCAGTCCTCAGCTGCTCACCAAGCTAGTGACAGGACAGATGGCATGTGGTGCAGTCATGGTCCCTACAACCATGTTTATGGGCCAAGTTGTGACGGCCTTCGCTCCTCAGCAGGGTCAGACCCAGACCATCAGCATTTCCCAGCAGccaccgcagcagcagcagccacaggAGCAGCAGGCTTCTCGGCTACTTCATGGAAACCAGTCCACCCAGTTGATCTTGCAGGCAGCGTTCCCTTTGCAGCAGCAGGGTACCTTTACTGCCACAacccaacagcagcagcagcagcagcagttacaacagcaacaacagttacaacaacaacaacaacaacaacaacagcatcatcatcatcatcatcctcatcaacatcaacatcaacatcaacaacagCAGAAACAGCAACTGGCCCCTCACAGGGCGGATAGTTTGTCTGATCGCTCTGCTACGCAGCCACAGTAGCCGGCCAAAGCCAAATCCGTAGTGGAGTGAGTCAAAACCCAAGTGTTGGTGGCTTTGTGACGGCGGCCTAAAGACGAGTTCTACTGAAAGTGCAGCACTGAGACCATGCCTCAGAGACTGAAAAGTGATTGGATGGGCAGGCTGTGGCTTCCCTCCCCTCACAAGGATCTTTTGCTGTTTGCACTTAACTCCTGAGCACCGAGTGCTGCAGAGAACAGGACTGAGCTCGCTGTGGCTCTGGCTCTGGGACGAAGGCCTTTTCACCGAGACAACAGGGAACCACTATCCCTGTAATGGACTCCCCCTCAAACCTCTGGCCCTCtcttgtgtgtttagtgtgtgtgtgtgtgcgtgctccagcccccccccccctcacaggATTATTTTATGCAGATCTCTCTGGTTAATTGAGTCAGTGCAGCAAAGCTTCTGTCAAGCTTCGAGGACATCCTGCAGAACAGCCAGAGGCTCGtttcttttggatgttttctcctatttgttgtttttcatgtaAAATTAATTATGGgtcagaaaatatttttaagaATGGTGTCTGGATTGAACTTTTACTGTACAGAACATCATGTGTAATATATTATGTAAAtataatgaaaaagaaagaacTAATATTTTATATGATGCATGAAATGAAATGCCTAGTCTGTTATATGCGGCGTtgaatatactttttttttttctagtatGCTATGACGAAAAGCTCTTAAAGTGCTCAGAGGCGGATATTTTCCCAGACTTCCTTTCTCCTAGGGGAtgggtttgtgtgtctgcatagCAGACATTGCCGATGCTGCTTGTTGTGTCACAGTTTGTTTCATCCTCGACCCATATTTTCACAGAATTTCATAAAACTGTTGAAGACatgttttaaagtatttttaagctttttaagaTGTGCGTAAAGATCTGCACACTAAAGACTAAAATCAACTTGAGTCAAATATTGTGAATGAACTGAAGACTGCCAAGGTGAAGCTAAAATGTATGCAATATTATAATTTGCCAGGATAATCTTTCATATTCTTATTTCTTAATTTTAGCACTTTTGCTGAGATGTCTCCAATTCAGAGCTATCCATAAGGTCTGTATGgttcctgaagaggatttatTCAATATATAGATTTATTCTATATACAttcagttccaccagagttccactgggggtgattgcgggagagtgcaaaatgaatgggagtcaatggagcTAGAcagcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640226.1 lncRNA upstream 69621 38247528 ~ 38248312 (+) True LOC120565354
TU136220 lncRNA upstream 116028 38200569 ~ 38201905 (+) True G101130
TU136154 lncRNA upstream 255261 38057588 ~ 38062672 (+) True G101081
TU136152 lncRNA upstream 271110 38046044 ~ 38046823 (+) True G101080
XR_005640178.1 lncRNA upstream 302659 38013189 ~ 38015274 (+) False LOC120565003
TU136319 lncRNA downstream 24034 38368697 ~ 38370401 (+) True G101208
TU136322 lncRNA downstream 27901 38372564 ~ 38372975 (+) True G101211
TU136347 lncRNA downstream 116011 38460674 ~ 38463579 (+) True G101232
TU136362 lncRNA downstream 169709 38514372 ~ 38514831 (+) True G101245
XR_005640169.1 lncRNA downstream 189902 38534565 ~ 38552304 (+) True LOC120564886
XM_039810439.1 mRNA upstream 3583 38307874 ~ 38314350 (+) True nmu
XM_039811807.1 mRNA upstream 54574 38260525 ~ 38263359 (+) True chst14
XM_039810203.1 mRNA upstream 82669 38217815 ~ 38235264 (+) True aasdh
XM_039811037.1 mRNA upstream 108446 38198996 ~ 38209487 (+) False ppat
XM_039811551.1 mRNA downstream 34553 38379216 ~ 38410217 (+) True kdr
XM_039811552.1 mRNA downstream 34553 38379216 ~ 38410217 (+) False kdr
XM_039810135.1 mRNA downstream 292146 38636809 ~ 38681396 (+) False lnx1
XM_039810137.1 mRNA downstream 292146 38636809 ~ 38681396 (+) False lnx1
XM_039810136.1 mRNA downstream 292182 38636845 ~ 38681396 (+) False lnx1
TU135875 other upstream 827861 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 1185628 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1619064 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1783394 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 532548 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1115783 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1216459 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2170430 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 2880428 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile