RNA id: XM_039810444.1


Basic Information

Item Value
RNA id XM_039810444.1
length 1555
RNA type mRNA
GC content 0.42
exon number 5
gene id ccl44
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23331778 ~ 23335697 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGAGGtataaagagagggagggagtaaTATAAGAGAGGCAGCCATAGAAGGAGAGGTGACAGAGTAGAttatcctcctctcctcctctctgccagCCTCATCATGTTCATGCTGCAGATGTTGACTGTTATCTTTCTGACTGTTATTCTCCTGGCATCTGTGGAAGGTAAAGGTGTGCAGATGCAAAGGGATATCCAGTGCTGCATGTTGTACTCCCAGGGCAAGGTGCGTACCAAAGATGTGTTGCGGTTTGAGGTGCAGACGGAGGGGCCCGACTGCAGTATACAAGCCATCATTCTTTACACGAAGAAGGCGGTGAAGTGTGCAGACCCCAGAGACCGGAAGGTGAAGAGGTTGCTGAGGAAGCtcctgcagagacagagagtcaagGCCCACCGAACCACGTGGCTCCTTCCTCGTGACAACCTGCCTGTCATGTCAGAGGACAAGAAAGATAACTGGGCGGTTCTCAATGTGGAGTGATGGAGCGCCGTCAAATATGGAGGAAAACCCATAGTCATAGGCCAAGTAAACTTTCAGCAGCTCGTCATCCTTACACGGCGCAGCTTGCTGACTCTCCAATagtctcgtctctctctctatctacaCTATCCGTCTCCCTGGGACCAGACCTGGGCAGcaatacatatttaaaatgGCTTTAGATATTTAAACATGAACTGTGCTTGAAATATTCTCAAACACACGGCTGGAACAGCCTCAACCGAGGAGTGTTTACTTGTAAGATACgttgaattgatttttttttttaaatggctcaTACTGTTATTTGCCAGAGTCTGACTGGAAGTGTCTCCCTCTGCAACATTACTACTTGTGGCTGATGTGAAATCAGTGAAAAAAGTGTAATTAAGCAAACGATAAACAAGCAGTGATATTTATAGAATGTTGTACATCAGCGAGATACTCTATGCTTATTTGTGACTTGTATTCTTTAGTAATGTGTTTATAACACTGCACACAGTAAAGTAGTAGGGTTTCATCACAGTGCAGTGTGCAAAATATCGGGGAACTTCTCTCTATATAGTAACTTTGTTTGGTTCCATCCAGTTGTCTTAAAGTTTAAAAATCCTTCTTCAGGCTTTGACCTGATGCATTTGACTGTTAGACAGGTGAAATCAAAGTGGGATCAGAGAGAAGATTTCAACATGATACAACTTCCCGTGTCACATAAAGAGCAAATGTTCCTAATGTTCCTGATATGTTGTCCACTCTGTAAATTGACTGTTTGTACTGTAAACTCAGCATGAAACCAGAGTCAATCTGTTAAAATGAGGCCCTCAGGCATCTACCCGAGATTTAAATATCTACGCATTTGCAGTTTACATTTGTCTATTTCACCAATAGTCCGTCACTAAACTATGCCAAAGTATTCATGATTCAATTCACCACATGGCAAGGCTGTTTAAAACGTAGAGGGCTCAATTGTGTGTGAAGCACACAAGTATTGTATTGTAGAAGAATGCACTGTATGTTAAAACACAGTATCTCAAGTGAACTATTTTATAAATTAATCTGAAGTAATAACCAAA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0060326 cell chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131630 lncRNA upstream 7279 23324259 ~ 23324499 (+) True G97538
TU131629 lncRNA upstream 7602 23323972 ~ 23324176 (+) True G97537
TU131627 lncRNA upstream 8294 23322957 ~ 23323484 (+) True pole4
TU131625 lncRNA upstream 8294 23323089 ~ 23323484 (+) False pole4
TU131626 lncRNA upstream 8450 23322957 ~ 23323328 (+) False pole4
TU131650 lncRNA downstream 17143 23352840 ~ 23363480 (+) True G97554
TU131656 lncRNA downstream 24361 23360058 ~ 23362720 (+) True G97559
TU131669 lncRNA downstream 43053 23378750 ~ 23380374 (+) False LOC120565078
TU131670 lncRNA downstream 65332 23401029 ~ 23425798 (+) True G97572
TU131698 lncRNA downstream 124586 23460283 ~ 23461368 (+) True G97597
XM_039810185.1 mRNA upstream 8686 23321464 ~ 23323092 (+) False pole4
XM_039810442.1 mRNA upstream 28087 23300806 ~ 23303691 (+) True LOC120565086
XM_039811738.1 mRNA upstream 49942 23249130 ~ 23281836 (+) False spata6
XM_039810429.1 mRNA downstream 43034 23378731 ~ 23380375 (+) True LOC120565078
XM_039811696.1 mRNA downstream 84247 23419944 ~ 23454783 (+) True si:ch1073-396h14.1
XM_039810994.1 mRNA downstream 250104 23585801 ~ 23588140 (+) True fam32a
XM_039810986.1 mRNA downstream 255755 23591452 ~ 23599922 (+) True hdgfl2
XM_039810987.1 mRNA downstream 255756 23591453 ~ 23599922 (+) False hdgfl2
TU131620 other upstream 9869 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 755576 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 756630 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 756854 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 757106 22574591 ~ 22574672 (+) True LOC120566225
TU131697 other downstream 139085 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 1446221 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1516604 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1532320 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 2197128 25532825 ~ 25547089 (+) True G98194

Expression Profile