RNA id: XM_039810466.1


Basic Information

Item Value
RNA id XM_039810466.1
length 5472
RNA type mRNA
GC content 0.52
exon number 35
gene id si:dkey-110c1.10
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26350599 ~ 26379944 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAATCACTGCATCCTCTCACAGATTAACAGTTAACTTGTCTTTGTGAGCCTGGACAAAGTGCAAAATACTGTCACCAGGACACAAAGTGGCTGTTCTGCAGAGTTGTGGAGGATACAGACTTTTCAGAGGGACGTGCTGATGTTACCCCTGttgattgttttttaaatgatgtcTATCTGCATGCTTTAAAGTAGTCAAGATGACATCACTGGAGCTATACAGCAAGGGAGCATGTGTGTGGGTTCCTGACCCAGATGCAGTTTGGGTGTCAGCCCTGCTCCTCCAGGACTACAGTCCTGGAGAGAAACATCTACTGCTACAGCTCTCTAATGGAAAGGAGACCCATTATCCAGTGGCGTCCCATTCTGATCTCCCACCTCTGGGGAACCCCGACATCCTGGAGGGGGAAAATGACCTGACAGCTCTCAGCTTCCTCCATGAACCTGCTGTCTTGCACAACCTGCGGGTTCGATTCCTGGACTACAGCAGCATCTATACGTACTGTGGTATTGTGTTAGTGGCCATCAATCCCTATGACCAGCTCCCCATATATGGAGAGGAGGTGATCGATGCTTACAGCGGCCAGGACATGGCCGACATGGAACCTCACATCTTTTCTGTGGCCGAGGAAGCCTACCGCACTATGaccagGGAGGAGAAAAACCAGTCTATCATCATCAGTGGAGAGTCTGGCTCAGGAAAAACAGTCTCAGCCAAATTCACCATGCGATACTTTGCTGTGGTTGGAGGAGCAGCACAGCAGACCAGTGTGGAGGAGAAGGTTTTGGCTTCCAACCCAATATTGGAGTCGATTGGGAATGCTAAAACCACACGAAATGACAACAGTAGTCGTTTTGGGAAGTACATCGAGATCGGCTTTGGCAGAAAAGGGAACATCATTGGGGCAAACATGAGGACGTATCTGCTGGAGAAGTCAAGGGTTGTCTTCCAGgCATCAGCAGAGAGGAACTACCACATCTTCTACCAACTGTGTGCCTCCAGGGAGTTACCTGAGATGAGAGCCCTTAAACTGGATGCACCTGAGCATTTCCGCTACACCAGCCAGGGAGGAGAGATGCAGATTCCTGGTACTGATGATCTGTCAGACCTGGAGCGCACTCGCAATGCTTTCACCATCCTGgATGTGCAGCCTGACCAACAGATGGAGCTCTTCCGGATCCTGTCAGCTGTTCTGCACCTGGGAAATGTCAACATCCAAGCCAGTGGGAGAAGTTCTGACCGGAGTTATATTGATgTAGACGACCACCCTCTGGCTGTCTTCTCCAAGCTGTTAGGAGTGGAAGGACCTCAGGTAGCTCACTGGCTGTGTCATCGCAAACTGGCTGTAGGTGGAGAGATGCTGGTCAAACCTGTGTCCGGTCAGCAGGCCATAGAAGCCAGAGATGCACTGGCCAAACATGTTTATGGCCAGATGTTTGCATGGGTTGTCCAGAGGCTCAACTCTGCTCTGCGCACCCAGAGGGGACAGGCCAAATCCTTTATAGGTGTACTAGACATCTATGGGTTTGAGACCTTTGACCGGAACAGTTTTGAGCAGTTCTGTATAAATTATGCAAATGAGAAACTGCAACAGCAATTCAACAGGCACGTGTTCCACTTGGAGCAGGAGGAGTACATCCGGGAAGAGCTGGCCTGGAGCAGGATTGAGTTCAGTGACAATCAGCAGTGCATCAATCTAATAGAGGGACAGCTGGGACTGTTTGATCTTTTAGACGAGGAGTGCAGGATGCCCAAAGGTTCAGATGAGAGCTGGGTGCAGAAGCTGTATGACCAACACCTGACCAACAAGCCCCACCCTCACTTCCAGAAACCTCGCATGTCCAACAGCGCCTTCGTCGTTCTGCACTTCGCGGACACAgtGCAATATGAATGCAATGGCTTTTTAGGCAAGAATCGAGATACAGTCTTTGAGGAGCTCATTAACATTCTCAAAGCAAGTCAGtctgagCTGGTGGCTGAGTTGTTCCAGCAGCAGGGAAATGTTTCCTCTGTGGCTAATGGAAGTGTTCGTTCAGGGAAAAGAGCCACCAAAGAACATAAACTGACGGTGGGCTTCCAGTTCCGTCAGTCCTTACAGATGCTAATGGACACTCTGAACAGCACCACTCCTCACTATGTCCGCTGTATTAAACCCAACGACCTCAAAGAACCTTTTATGTTTGACCCCAGGAGGACAGTCCAGCAATTGCGAGCCTGCGGGGTGCTGGAGACAATTCGCATCAGTGCTGCAGGTTTCCCATCCAGATGGACCTACGAGGAGTTCTTCAGCAGGTACCATCTTCTGCTTCGAGGTTCTCAGGGCCAGGATCAGGCCCAGGCCTCGTGCAGACAAGCCCTGCCTCAGCTCATCCCAGACCCAGACCAGTACTGCTTTGGAAAGACCAAAGTATTTTTCCGGGCCGGTCAGGTGGCTGTACTGGAGAGGCTGAGAGCTGAGAGGCTGCGTGTTGCTGCTGTGATCATCCAGAGCAGGGTCAAAGGATGGCTGGCACGGATTAGATACACCAGGATCTGCTGGGCAACCGTCACCATACAGAGATACTGCAGAGGAGCTCTGGCCAGACGACTTGCCCTGACTCTGCGCTACACCAAGGCTGCTTTAATAATCCAGAAGACCTACCGCATGGTGATGGTCAGACAGATGTTCCTCATGATCCGACAGGCCACCATCACCATCCAGGCCTTCACCAGGGGCACGATGGCGCGCCACAGATACAGACTGTTGGTGGCGGAGCGGGCTGCTGTATTGCTTCAGGCGAGAGTGCGTGGGTGGTTGGCGAGGCAGGCGTACAGGCGAATACATGCGGCGGTGGTGTTCATGCAGTGCTGCGTGCGCCGCAGGGCTGCCAGGAGAGAGCTGATGAAACTAAAGACGGAGGCCCGCTCAGTGGAGAAGTACAGAGAGCTCAACAAGGGCATGGAAGTCAAACTGATGCAGCTGCAGTTGAGAGCAGACCAGGAGGCCAGGGAGAGTGCAGCTTTGAGAGAGACCCTGCACGCAGAGCGAGAGGCCACCAGTGCTGAGCTGGTGGCCCTGAGGGCGACGGTACAGAAActggagagacagaaacaggagaAGCCTCAGCCCTGCGCCGTCATTAGCGAGAAGAAGGTGGAGGAAAGAAGGAGAGCTGAAGAGAAGGCTGCCCAGGAGATCCTTCAACTCACACAAGAGTTACAAGCCCTGCAAAGAGAAAAGGACCATTGttgcaaagagagagaggatctCTCTGCTCGCTTGTTTGAGCAAGAAAAAGCACAAGAAGagcgTGTGCATCAAGCTGTGTCTCAGGCGGGTGCATCTCTGAGGGCGTCGCTggatgaggagaggagaaagtaTCAGGGTCTCCTGAGAGAGTTCACCAGACTGGAGCAGAGATACGACAACCTCAGAGAGATGAGTCTGCTTACTGAGCACTCCAAGGGCCACAGAAGGACGGACTCCACCCAGAGTCTGAGCTTGgagcctctctctccctcccccactGCGTTGTCACCCCAGTCTCTCAACCCACTCTCACCCTTCCCATCTGTCTTCCCGTCCCCGGAGGAGGGCCGCAGGGTCAGTGTGACGTCTCCCTCGATGGAGCGGAGAGCCTCAGTGTGGAGCTTGGAAACGCCAATGGATCAGTTGATGGAGAGGATGGATGTGGCCAAAGACCCGGCAGTGAAGATGAAAGGAGAGGACCTGGCACATGCTTACGATGCCGTACGAGTGGCCAACAAGTTTCTGGAGAGCCAGCTGCGTAGTCGGCGCAGTCAGAGGGAGGAGGATCTGGAGGCTCTGAGGTGCCAGCTTAGTCAAGCCATCTCTGGTTCTTCCTCTGCTGCACAGCGACAGgAACTGCAGGAACTACTCGAGGCCAGAGAGCAAGAGTGTGTCAGATTGAGAAGAGAGCTGAAGGAGCTTAAAAACACAGTGTCACTCAGACGACTCCTGACACAAGCTTTCATTCAAGAGACATCCTCCTGTCAATCCCGACCGAAGCCAGCATCAGTCACTGGTCTGCTGGAATGTAGGAAGAGAGATGAAACCAAGCTCATCAAGAACCTCATCACAGACATCCGTGTCGACAGCGCCCTGTCTCTGCCTCCTGGCCTGCCTGCCAGCGTGCTCTTCCTGTGTGTCCGTCAGGCCGACTGCAGCGGAGACCAAACGTACGCCCGCTCACTTTGTAGCGCTGCTGTCACTGCTATAAAGGCAGCTCTGAAGAAACATAGTAACGATGTAGATATGACAGCTCTGTGGCTAAAAAATGCCTCTCTGCTGCACGACCTGTTGACCCAGCACTCCCCGAAACAGACCCTTGACTCAGACGAACTGGTTCCATTGGCGGCTGATCTGAGTGACTTGATCCGCACCCTGAGTGACCTCTGTATCCAGGCCTATCAGCAGCTCCTCTCCATCACTGAAAAACGCCTACAAAACATCATAGTCCCTGCTCTGTTGGAGAGTGAGACCATCCCAGGGCTGTCTGGATCGGCAGTTAAGTTGGGAACGTCCAGAAAGCGAGCAGGTTCTGACCCCAGGACCGTAGGAGGTGATGCTCCCACAATGGCGGCAGTGCTGAGGGAGCTAGGAGCCCTTCACACCGCTTTGTCCCATCAGGCTCTGCCCCCGTCACAGATGGAGCAGGCCTTCCACCAGCTCACCTACCTCATCTCTGCCTCCGCTCTCAACAGCCTGCTGCTGAGGAAAGACATGTGCTGCTGGAGTCGTGGGATGCAAATACGCTATAATGTGAGTCTGCTGGAGGAGTGGCTGCGTAGCCGAGGTCTGCAGTCAGGGGGTGCTGTGGTCACACTGGAGCCCCTCATCCAGGCGGTTCAGCTGCTGCAGGCTGGGAAAAAGACTGAGTCAGACGCACAGGCCCTTGTTCAGACCTGCACTGCCCTGTCCAGCCAGCAGATAGTGAAGATTCTGACCCTCTACAGTCCCCACAGTGACCTAGATGAAAGAGTCACACTGAATTTTATCCGTACTGTCCAGGGGCTTCTCAAAGGCCGTTCTGACGGTCAGCCTCCACAGCTCCTCATGGATGTGAGACGAGTGTTTCCTGTCACATTTCCCTACTTGCCTCCCCCGGTCCTCCATGCTGAGCAGTTAGTCATCCCAGACTGCCTCAAGATCTCCTTTCTACGCAGAGCCTAGAAAAGGATGCCTTGCCTCTTCAGGGcaatatatattaatgttttagcAAATTTTAATTCCCAATATATTGAATTTAATCCTTTGAAAGTAAAATTACTTCCAGGAGATATTGTGAATTTAATTCCTctctcagatttttttttagtggCACTTACTTTTTAATCTGTTAATTATCAGTGGCTTAGTCTGTATGCTGTAGAAGGTCAGATAACAAACTGAAATGGCACCAATGCcaaaatgtttctttaaaaaaggtagtaaatatttgaataaaacAAGGCAGTTATGTAGTCAAA

Function

GO: NA

KEGG:

id description
K10357 MYO5; myosin V

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132817 lncRNA upstream 8306 26339571 ~ 26342293 (+) False LOC120565098
TU132812 lncRNA upstream 8395 26339571 ~ 26342204 (+) False LOC120565098
TU132823 lncRNA upstream 8395 26339571 ~ 26342204 (+) True LOC120565098
TU132802 lncRNA upstream 55606 26294539 ~ 26294993 (+) False zbtb7a
TU132804 lncRNA upstream 58159 26292100 ~ 26292440 (+) False zbtb7a
TU132919 lncRNA downstream 118088 26498032 ~ 26498261 (+) True G98494
TU132926 lncRNA downstream 131240 26511184 ~ 26511527 (+) True G98500
TU133001 lncRNA downstream 491400 26871344 ~ 26871564 (+) True G98546
TU133007 lncRNA downstream 560968 26940912 ~ 26949064 (+) True G98552
TU132991 lncRNA downstream 612954 26992898 ~ 26994055 (+) True G98544
XM_039810482.1 mRNA upstream 172 26343721 ~ 26350427 (+) False mbd3b
XM_039810484.1 mRNA upstream 174 26342442 ~ 26350425 (+) False mbd3b
XM_039810483.1 mRNA upstream 174 26343719 ~ 26350425 (+) False mbd3b
XM_039810481.1 mRNA upstream 174 26343724 ~ 26350425 (+) True mbd3b
XM_039810485.1 mRNA upstream 174 26343726 ~ 26350425 (+) False mbd3b
XM_039811678.1 mRNA downstream 142400 26522344 ~ 26724401 (+) True celf5a
XM_039811681.1 mRNA downstream 142400 26522344 ~ 26724401 (+) False celf5a
XM_039811679.1 mRNA downstream 142400 26522344 ~ 26724401 (+) False celf5a
XM_039811686.1 mRNA downstream 142400 26522344 ~ 26724401 (+) False celf5a
XM_039811682.1 mRNA downstream 142400 26522344 ~ 26724401 (+) False celf5a
XR_005640198.1 other upstream 331228 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 618422 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 803510 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1476725 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 412743 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1648028 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1757325 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2392444 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3283689 29663633 ~ 29665090 (+) True G99297

Expression Profile