RNA id: XM_039810476.1


Basic Information

Item Value
RNA id XM_039810476.1
length 5362
RNA type mRNA
GC content 0.43
exon number 20
gene id tcf3b
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26306622 ~ 26339210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGATTACATCAAAGCATGATGTTCGCGCCTCCAGTAGCCAATGGGAAGAACAGAACAATGACACTTGCCAGCAGTCAGTTTGGGGGATCAGTAGATGAGCGCAGCGGCTCTGGGTCTTGGGGCTCAGCAGAACAGAACAGCCCCTCTTTCAGCCAAGGACGGGGCTATGGCGAAGGGTCCCACTACAGTGAGCATGAGGGCTTGTCCTCTCCATTCATCAGTTCGGGTGTTGCAGGTAAAAATGAGAGGCCACCATACCCTCCCTTTGGAAGCCAGCCTGGATTTCTTCCTAGCGACATAGCGATGCCCAGCCCAGATGCCATGTCCCCCTCTGGCCTGAAATCTGGCTCCCAGTTTTACCCGTCATACCCAAACAACCCCAGGAGAAGGCCGCCTGATGGAGGCATAGAAACCCAGCCAAAGAAGATTCGGAAACCCCCTGGCCTGCCGTCCTCGGTATATGCTTCCACATCTGGTGATGAGTATGCAAGAGACAATGGAGGATATCCTGGTGCTAAGCCTGGAGCTGTCTACCCTGGCTCTTTCTATATGCAAGAAGACCCCTGGTCGTCTTCTGGCTACTCTGCCATGCTGGGTAACTCTCCTCACATTGGACAGCCAGGCTCCTTCTCTGCAATTAACCCACAGGACAGGATGAAGCGTCAACCCCTGCCTCTGTCCCCACAGAACTATCCTCTGCATGGCAGCGATGTCAACGGCTTCCACTCAGCCCCCACCACCTACAATCACACACCCACCATCAACGGAGAAGGCATCATGGCCAACCGAGGCACCACAGCTGGCAGTTCCGGAGATGAAATTGGAAAGGCTCTTGCCTCAATTTACCCGTCGGACCACAACAGTAATAACTTCTCCTCGGCTCCGTCTACTCCTGGATCTCCTCAGGCTATTGCAGGAGCTCAGTCTCAGTGGCAAAGACCAACCACACCCAACTATGAAGGGCAACCACACACACTGCAGAGTAAAATGGAGGACCGTTTGGAGGAGGCCATCCATGTACTGCGTAGCCATGCTGTGGGCCAGGGCTTAGAGGGTGCCCCCGACATGCACAGCCTGCTCTCTGCAGTACACAACGGGGGCCTCGGGGGCCTCTCTCCAGCTTTTCCCAATGCAAGCCTTGCCCTCAGCAACAGACATCCTGCCATGCAAGGAGGGAAACACGAGGAGCCCACAGGCCTTCCTCCCAGCAGCACTCTTCTGCATGGTCATCACGCATCCGGACCCACACCGCCAGTTGGCCAGCCGGAAGGCTTTACCAGTCTCCCTGGTGGTTTGGCCCGCTCCACACACTCCTCTAGCAGCTCAGACATCAAAAGAGAAGACAAAGAGGATGATGAAAACTCATCTGTTGCAGACAAATCCGAAGACGAAAAAAAGGAGTCCAAGGCAGCACGCAGTCGAAGAAAGGAGGCGTTGACCCTCCAGATGCTCTCTAGCCTTTCAGACCAGAAAGATGATCTGGAGGACGAAGATGACGAGGACCTTCCTCCTGAGGTGAAGATGGAGCGTGAGAAGGAACGGCGAGTGGCTAACAATGCCCGCGAGCGTCTCAGAGTACGGGACATCAACGAAGCATTTAAAGAGCTTGGGAGGATGTGCCAGCTGCACCTCAGCCACGACAAACCTCAGACCAAACTTCTCATCCTGCACCAAGCCGTCAATGTCATCCTCAATTTAGAACAGCAAGTCAGAGAGCGTAACCTTAACCCTAAGGCAGCATGTTTAAAACGCCGTGAGGAGGAGAAGGTGTCTGGGGTGGTGGGTGAAGCACCCATGCAGCTCTCAGGAGGCCATCCTAGTATGGGAGGAGATGGCCACAACCCAGTTGGCCACATGTAACACCAGATCTGGTGGTGTTTCCCTGGCTGTCAGAGGATGTGGCCTTAACAGATTTCTTCCACCCATtattctcagtgtgtgtgtgtatatgtggacATGTCTGTGTATTGTCCGTTCAAGTTTCAAgatgcacattcacacactcgtacacacatgcatactgcCAAAACTGACACAGCCTGTTTGTCGCACTCCCAACCATGACTACAAGCTCAAATGtgaagaactttttttttttttagttttgctttgttttatacatgtaaaaaaaaaaaaatcttcttggTTTCCAAAAGATGATGGAACACCGGAGTACATTTTGTCCTGCCACAAATTGGGACTTCACACACTGCCGAGAGGTGCTCTTGTGAAAGAAAGGAGAcctaaacaaacacaaattgaaTCAAGGATTTGTGCCTAATTGTTACATGTTTTCTATTTGACATTTAAGCAAATTGCTTTACATGTGAGGAACATTTATTGTGTGGGATTGCTTATGTGTATGAGcaattatttttaatgtatgtCATTCCCAGCGTGATGGTACAGTCTTACATATGTTATGTAACCAAGCCCATAGTTTAAGTTGAATTGTCTAAATTCAGTGACTTTTCCTTAACCTTATCAGCAAGTGTTGAAGGGAAGGCGATGGAAAGGTCAAAGCCTTGACAGTTCAAAAGCAGCTTTTAAAAGACGGGAACTCTGACCTAGAGGAAGTCTCTGACTGATGCCTGGTCTCCTCCCACGAGGCATCTGGAGACTTGGAATAGAAGACTCCCTCCTTGAAGGTTATGAATTATCCAAGTGGTAGAGTCTGTCAACTTCAAAACCGTTTTTTCCCATTTGTTGACCACAAATTCTAGTGTTTCTCCAGTAATCCCTTGTCATAGGTTCAGGTGTTTGTACTGCTTTATGTACAAAAGCATACTTAAGACAAGACAAAGCACAGTTGTATAGGTTTAGGCTTAAAAGTTAAGTGTTGACCTGTTGTGCATTTCAGTCCCTGAAAGTCTTGTATAAAAGCCATTTGAGACGCTTGCTAAGTGATCAGCACCACTTAGTGCTCTTACTTACCTAAAATGGTTTTCTGACAATGCCAGCAGAATTAACAGCTCAAGTTTTTCCTCCTTAATTGACGTTctgtaaaagacaaaaaaaaaatctgggttCCTTTTGATGAAGGGGTCTCATCAGTCCGCAGTTGTTTGAAGCAGACAAGCCTCAGTGTAATGGAGGCTTTCTTTTCCTAAATGAGCATTCCCACTGAATTACAGCCCCTCACCTTCCTCCTGAGTAAGTTTGTTCTCACACTTCTTACTGAGAGAGGTGTAATTTGTAAATTCACTTCACACATTACTCGGATAtgtttcatttttcaaaattaaatatatatatgaaatatatattttttgttagtCTATACATTGTAGATTTTTTACATAAATGGCAATATTAGTTTGAAGTTTAGAGTGTATTGTAGATGAGCTGAATAAGGGGGATATTTGACATTTGACACGGGGACGGCAGAGGAAAAGGGTCAACAGATGATAAATGAAAAAGCGTTTGGTGTATCCTTGATTCCAGTTTTAGTTGTAAGGCGTATCATCAGCTAcccagatgattttttttttctttccatttggGGGATTTTGTGCCACAGTCTTGTTGAAGTCTTCTTACTTTATCAGTGAGGCACTGAGGAAAAATGTCGGAAGATTTTTGTCTCTAACAGTAATTATGCAACTGGTATTTGAATGTAGCTACCATACAAATGTGGATCACTTTCATTTTCAAAGTTGTGTTCCTGGGTTTTGTCAGTACAGTATACTAGTTTCCATTTCACCGTTTTCTAATGTTTGCCCTCAAAGTGGCTCTCCGTGTGCAGCTCACTTCTTAGTAGCCTGTACATTTATTTGGAGGCAGACGTCCGTATTTGGGTGTAAGGTAATGGATAATATGGAGAACAAAACAGTGTTATTATGATGTTATTCCCATGTCATATCATGTTGTGAATGGTTTTGACCAACATGTAATCACAAATGGGAGGTAGAGCACATCGTGTGTTTAATTTCTACAAaaagagatgaagaaaaagACCTATACAAATCAATAGTGTGGCCTTTTCATTCTCAAGACTTAAGATGACATGATGGGAGAGTGATACCTTATCAGTGCCTGAacttgtattttcatttaagacagttttattttgtgatcCATATCATTTCATATATCATGGAGATTAAAGAGGTACTTGTTCATTCCCCCACCCTCCCTTCTCCTAATGCTTTTTCAATTTTTCAGGAAGAAGTTTAAATGGTATAAAGAGATTTTCTTTCAGTGTAtctagttaaataaataaatgttatgtaGATCTTGTTCAgtttttattcccttttttttctaattattcAACTGGATTATATTGCCCAAACTGCTGTTTTAGTTAAGGTAATGGGTCCAGTTAATGAGTTTTCTTTCTATCTGCCCTATATTGCTATATAATTTGACATCACTTGACAACAGGGTTCAAGAGATGCTGCTTTTGGCTCCGATTGTCTGCTTTTGATGCACATTAACATGTTTCAGTGTACGTGTTGCTTCAATTTCAATGTAGGGAGtgagttttattttctgtcGTAGCTGGAACCTCTAATGACTTGGAGCATTTTAAGTTTCTGTATATCGAAGTGCAAGCCCTTTGCTGCAGTGACTTTTAGTATATTCAGGATAGTTTCCAGTGACTATTTTCACCTCCAGACCTTTCACTCTTCCAGCTCTTTGATGCCATTGACAGTGACTTTTTGTGAGAAGTTCTAATCACTTCTTTCAAAAAGTTGTAtttgaagtttttctttttaatattacAAGATCAATAATTGTACTGAATATTGCTGGTTTGTTCCATAAGGAAAATCTGACTTGATGTCATTTAGTATTCTGTGAGCATCCCATCAGCCTACATACTCAAATTatttgtttggggggggggggaccttATTTCTTTACGAGTCTTGACATAGACTCAATGAAATCTGCAGAAAAGCAAGCCAACCACTGCAGGAGCACATGATGTCAACAGAAAATTACAATATTATGATGGAAAATGTTAAGTTGACGGGcttgaacttgttttggtataAGAAAGCAGTAATAAAACACTTGCTTTCAACAGTTTTGTCATATCTTTGTTGAACTAAAAGGGGAGACTATTGAGTGTTAAAATACATTCGCAGGTACAGAGCCTGACATCTTGGGAGTGAGGACACTGACTCCTGCAGCGTCCTCAGCGTGCCTcactcaccctctctctctcttttatatatatatatatataaatatatatagttgaGAACTGTCCTGTATATAACAGTAATGTAGCAATAAATGTGCCATTTTTAATAACAGATTATACCTTTTCCAATGTCTGGCTTTTGAATATTGTATacataaaaaggaaaataaaggaaaacaaTGTAATAAAGGGTTTATTGTAGTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132802 lncRNA upstream 15538 26294539 ~ 26294993 (+) False zbtb7a
TU132804 lncRNA upstream 18091 26292100 ~ 26292440 (+) False zbtb7a
TU132754 lncRNA upstream 116442 26191868 ~ 26194089 (+) True G98384
TU132719 lncRNA upstream 173901 26135237 ~ 26136630 (+) True G98363
TU132812 lncRNA downstream 361 26339571 ~ 26342204 (+) False LOC120565098
TU132817 lncRNA downstream 361 26339571 ~ 26342293 (+) False LOC120565098
TU132823 lncRNA downstream 361 26339571 ~ 26342204 (+) True LOC120565098
TU132919 lncRNA downstream 158822 26498032 ~ 26498261 (+) True G98494
TU132926 lncRNA downstream 171974 26511184 ~ 26511527 (+) True G98500
XM_039810453.1 mRNA upstream 15149 26283052 ~ 26295382 (+) True zbtb7a
XM_039811876.1 mRNA upstream 42035 26258304 ~ 26268496 (+) True map2k2a
XM_039811431.1 mRNA upstream 53084 26244296 ~ 26257447 (+) True pias4a
XM_039811849.1 mRNA upstream 120609 26143887 ~ 26189922 (+) True atp8b3
XM_039810486.1 mRNA downstream 333 26339543 ~ 26342210 (+) False LOC120565098
XM_039810484.1 mRNA downstream 3232 26342442 ~ 26350425 (+) False mbd3b
XM_039810483.1 mRNA downstream 4509 26343719 ~ 26350425 (+) False mbd3b
XM_039810482.1 mRNA downstream 4511 26343721 ~ 26350427 (+) False mbd3b
XM_039810481.1 mRNA downstream 4514 26343724 ~ 26350425 (+) True mbd3b
XR_005640198.1 other upstream 291160 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 578354 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 763442 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1436657 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 453477 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1688762 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1798059 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2433178 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3324423 29663633 ~ 29665090 (+) True G99297

Expression Profile