RNA id: XM_039810481.1


Basic Information

Item Value
RNA id XM_039810481.1
length 2330
RNA type mRNA
GC content 0.43
exon number 7
gene id mbd3b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26342442 ~ 26350427 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGGAGCGATCTGCGCGACGACAAAGAAACGAGATGTTGTTAGCAGGGAGATCCCATTACGGAGGACGCATGTTATAATATGGTCGAAACAAAAGCGTAAGAAGCGATAGGCCTGACATCCAAAAAATCCTTAAATCCAATCCGCAGTAACTTTTAGTGGATTTATAGGCTACTCGCGTGGGAAATGGAGAAGAAAAGGTGGGATTGCACTGCTCTCCCCAAGGGCTGGAAAATGGAAGAAGTGACCAGAAAGTCGGGTTTGTCAGCTGGAAAAAGCGATGTCTATTATTTTAGTCCATCTGGGAAGAAGTTTCGGAGCAAGCCTCAGCTGGCCCGTTACCTTGGTAACCAGATGGACCTCAGCTCCTTTGATTTCCGCACGGGGAAGATGCTGATGAGCAAGCTGAACAAGAACCGCCAGAGACTGCGTTATGATAACAACAACCAGAACAAGGGCAAACCTGACTTGAACACATCACTCCCAGTCAGGCAGACGGCCTCCATCTTTAAGCAGCCTGTTACCAAGGTTACtaaccacccaaacaacaaagtgAAGACAGACCCTCAGAAAGCTGTCGACCAGCCCAGACAGCTATTTTGGGAGAAGAAACTCAGTGGTCTTAATGCTTATGACATTGCCGAGGAGCTGGTGAAAACAATGGAACTACCTAAAGGTCTGCAAGGTGTCGGTCCAGGCTGCACAGACAAGACTCTCCTGTCGGCCATTGCGAGCGCTCTGCACACTAGCGCTGCTCCCATCACCGGCCAGCTGTCTGCAGCTGTGGAGAAGAACCCAGGAGTCTGGCTCAACACCACACAGCCGCTGTGCAAGGCCTTCATAGTCACTGATGAGGACATCAGgaaACAGGAGGAGCTGGTGTACAGTGTGAGGAAAAGGCTAGAGGAGGCACTGATGGCTGATATGTTGGCTCATGTCGAGGAGGCTGCCAATGAGGGAGACACTCTGCAGGAGGAGGGCAACGGCAGTGAAGATATGGAGAGCGTATAGCACAGGGTTTTGTTCAACACCGGTACACATGACCATGAGCAGTCGGAGCCATACAGCAGTCCTGCCCTGATGAACTGTCCCTGAGTATCTGCGTCCAACTTAAACCTTAACCCGACTTACACCAGTCCAGTTCAACCTCAAGAACTGTCTTCTCCTCTCCTGAACCCACAAACGCTTGGCGTCTCAAATGCGTCTTTTTATCATTAACTCCACTGGATGGGACTCACTGACTTCAACTGCAATTAAATTACTCGACGTATTTCCGAGCTcggttgatttttcttttttttttgactgacatttaaaaaaaattcccttgaactttcaaatattaaaaataatttatctACAGTGTGACAAATTCAGTGTTTGATGAGAAGTGTATTTTTTACTGAAAGGCTTTGAATGGGTTTgtattttttgtgacaatcgTGTCAAATTCAAACATTGTATGTCAGCAAAAAGTTGATCTGGgtgcttttttgtttgtttgttttggggcAGATTGGAAATGAATGTTTTGTATCTTTGGCTCTTGAATTTTATGATGCACTCCACAAGTTGTCAGACACAAAACACTGTCTTTTCTAGTGGAACCAATTGAGATGTAACTATACTGAGTTGATCTCATTCAAATTAGCATCGGTGCCAACCTGCAGGCCGGCTGATGTTACTAATGCAAATGGTGAAGTTTTTAATCCCTTGTACATCCATTGGAGGGGATAGAGTCAAgtttttattgttgtaatttcaaggaaatattgtacttcatGACAGCTGTGTCATCCTGTGACTCATGTTCAGTATTGACCCTAAAGGAGACATGTCATTTTGAAGAGGGTTGTTTGAAGTGCGTTTAACTAAAGTCTGCTTGGTATTTTACCCTAAGCGTAAAATGTGCTGTACACATGATGGTGAAGAAATGACTTGAAACTTTTATCTATTGTACAATTATGTTTTGTAGTCCTAATCATTATAGGTGCTTACTGTGAAACATCGCTGTTTAGTCTTTGTTTCTATTGGTTTCAGTCCACGTTTCTTTTTAATGTGTCAATGTTACCACACACATGCTGCCTCTGGTACACTCACGCACAGAATTGGTGACACAGCAAATTACAGTTAAGAAATTGAGTTTTAATGTCATTTAGCATCTGAGGAATAataattttgtatttgtttttatttttatttttatccctGTCAAGGATTGATGGTAAATAATGTATCCAGCTGAAATCATGAATATCCCTTTTCAATATCAGCAGGCTGATTGCTGAAATGAATTTGATTGTATTACTTATTAAAAATGAGTTGATATGT

Function

GO: NA

KEGG:

id description
K11591 MBD3; methyl-CpG-binding domain protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132817 lncRNA upstream 1431 26339571 ~ 26342293 (+) False LOC120565098
TU132812 lncRNA upstream 1520 26339571 ~ 26342204 (+) False LOC120565098
TU132823 lncRNA upstream 1520 26339571 ~ 26342204 (+) True LOC120565098
TU132802 lncRNA upstream 48731 26294539 ~ 26294993 (+) False zbtb7a
TU132804 lncRNA upstream 51284 26292100 ~ 26292440 (+) False zbtb7a
TU132919 lncRNA downstream 147607 26498032 ~ 26498261 (+) True G98494
TU132926 lncRNA downstream 160759 26511184 ~ 26511527 (+) True G98500
TU133001 lncRNA downstream 520919 26871344 ~ 26871564 (+) True G98546
TU133007 lncRNA downstream 590487 26940912 ~ 26949064 (+) True G98552
TU132991 lncRNA downstream 642473 26992898 ~ 26994055 (+) True G98544
XM_039810486.1 mRNA upstream 1514 26339543 ~ 26342210 (+) False LOC120565098
XM_039810480.1 mRNA upstream 4514 26306625 ~ 26339210 (+) False tcf3b
XM_039810466.1 mRNA downstream 174 26350599 ~ 26379944 (+) True si:dkey-110c1.10
XM_039811678.1 mRNA downstream 171919 26522344 ~ 26724401 (+) True celf5a
XM_039811681.1 mRNA downstream 171919 26522344 ~ 26724401 (+) False celf5a
XM_039811679.1 mRNA downstream 171919 26522344 ~ 26724401 (+) False celf5a
XM_039811686.1 mRNA downstream 171919 26522344 ~ 26724401 (+) False celf5a
XR_005640198.1 other upstream 324353 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 611547 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 796635 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1469850 24852301 ~ 24873874 (+) False elovl1b
TU132947 other downstream 442262 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 1677547 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 1786844 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2421963 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3313208 29663633 ~ 29665090 (+) True G99297

Expression Profile