RNA id: XM_039810499.1


Basic Information

Item Value
RNA id XM_039810499.1
length 4152
RNA type mRNA
GC content 0.45
exon number 15
gene id ncln
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21895470 ~ 21909198 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCTCCGGTTgcggttagctagctagctagctaaactggGTCCCCGATTGTCAGTTGCTGAGAGCGGTGACAGCTGAACATATTATTTTATCTCTAGCTGTGCGCTCAATACAATCGCCACAATGTTTGAGGAGGCTAGTGAAGTGTTCGACAACATGTTTAAATCTTCGTTTCCCCTTACCTTCATTGTGTTTATCCCCGCGGTGTTGATCCTGGTGTCACCGCTCCCGGCCGAGGCGGCACATGAGTTCACGGTGTACCGCATGCAGCAGTACGACCTGCAGGGACAGCCTTACGGTACCAGGAATGCCATCCTAAATACGGAGGCTCGTACTGTGGAAGCAGAAGTACTAAGTCGTCGCTGTGTTATCATGCGACTGGCAGACTTCTCCTATGAAGAGTACCAGAAAGCCCTACGCCAGTCGGCAGGAGCTGTGGTCATCATCCTGCCCAAAAACATGTCTGCTATGCCCCAGGACATAGTACAgCAGTTCATGGAGCTGGAGCCAGAGATGTTGGCCACTGAGACCATCGTCCCCGTCTACTTTGCCATGGAGGACGATGAGCTGCTGTCCATCTACACCCAAACcctgacctcctcctcctcacagggCTCCTTATCAGCAGCTGAAGTGCTGCTGCATACGGCCACAGCCAACGGCTTCCAGATGGTCACCAGTGGAGCTCAGAGTAAAGCTATCAGTGACTGGGCCATCACCAGTCTAGAGGGTCGTCTGGCTGGAGTTGGAGGAGAGGACCTGCCCACTATTGTCATGGTTGCTCACTACGACTCGTTTGGTGTTGCTCCATGGCTTTCATACGGAGCAGACTCAAATGGCAGTGGGGTGTCCATGTTACTGGAGCTGGCTCGTCTCTTCTCGAAACTTTACACTTATAAAAGGACACACGCTGGGTACAACCTGCTGTTCTTTGTGTCTGGTGGGGGGAAGTTCAACTACCAGGGCACCAAACGTTGGCTGGAGGACAATCTGGACCATACAGACTCCAGTTTGCTGCAGGACAACGTAGCCTTTGTGTTGTGTCTAGACACTCTGGGGAACGGAGACTCTTTGCACCTTCATGTGTCCAAACCTCCTAAAGAGGGAACTCCTCAGTATTCTCTACTTAAAGAGCTGGAGATGGTGGCTGCGAGTCAGTTCCCAGAAGTCAAGTTCTCTATGGTCCACAAGAAAATCAACCTGGCCGACGACATGCTGGCCTGGGAGCACGAGCGCTTCGGGATCCGCCGGCTGCCGGCCTTCACGTTGTCCCATCTGCCCTCCCACCGCCTGGCTCAGCGCTCCAGCATCATGGACGTGCGGTCAGTGTCCCCCTCCTCTCGCCATGGAGCGGGAGAGCCCCCTGCTGGGCCTCATGTCGACGTGAAGAAACTCAGCAGGAACACCAAGCTGGTAGCAGAGGCACTGGCAAGGGTCATTTACAACCTCACTGAAAAGGGGGCTCCTGGAGACCTGCAGATCTTCACTGAACAGATGGTGCAGGACGAGCAGCTATCAGCAGTGGTGGACTGGCTCACAGCGCAGCCCAGAGCCGCTCAGCTGGTGGACAAAGACAGCAGCGTGGTGTCCACTCTGGAGTATCACCTCGGACACTACCTCAAGGATGTCAAGAGACACTACGTCAAAGCTGACAAAAGGGATCCAGAGTTTGTATTCTACGACCAGCTGAAGCAGACTATGAATGCTTACAGAGTGAAGCCTGCTATTTTTGACTTGCTGCTGGCAGTCTGCATTGCAGCCTACTTAGGGATGATGTATCTTGCTATCCAGAACTTTGGAGTCCTGTACAGTGTTGTCCGTAGAATCACCCAACCCAAGGCGAAGATCCATTAAGGTGCACAACGCCGCATTTCTTTTTCCGATCCCACCCTTTTCCTCAAATCAAGAAACTTTAACCAGTAAGAACATCGAAGCTGGGCCGAGCTTCTGTCCTCATGACGGTTTCAAACCAGCAGAATCTCTTCCTTTCATTTCCTTCATCCTGATACCACAAACTATGATGTCAGATCCTGTCCTGCTGCCAACTTAATCCATTTGGTCTCACAGACCAGAATAATCAGGAATCATTTTTCAATCTCCCTGTCTTCATGAACACATTTTGTCTTGTCATTCATCAAAAAAAGAATCCCTCGCGTCGGACATATTTCGTTGTTTGACTGTCGTGAGGGATGCAAAGCATCTGTCCACACCGCTGAGATCTAGATGAGATTAAGTGAGTTTCTGATGTTGCTGTTCCAGCGAACACTCCTCATTCCTCCTCTCGGTATACCGTACAAGTGATCGTTGTGCCAAACCGACGCCATGTGTTGTCTCGGGCAGCTACAGGGAGAAACTGACCACACAGAGTTTAGCCCAGAATTTCTTTTGTCGAGAGATGTGTTCACCCAACCTGGTTGTTAAAGGACAAGTTCACATTTTCCAATCTGCTTAAATACAATACTCACATTTCCATAAAGACGTTTACAGTCACTTTAATGGTTCTTTCTCTACATACTGACTGTTTAAATACCCCCTCCTGAATCCACagtcctggttttgtgcaaaaACCTAATTTCAGCTGATTCAAAGTCTTTTTGGTAAGACATTCCCTCTTTATGTCATTCTAAAGGACTGTAGCATCAGGCCAAACCCATTTTAGCTTCAGATGAACTGCACTTTTGCACAGAAaggactgtggattttgtcTTCCATCTcttcagggctgcaactaaccataATAATTTTATAGTCAACCGATCCGTTTTTATAAATTGATCGATCGCTTagactataaaatgtcagaaaatagtgcaaAATGCCTATTGCAGGTTGTCAGAGTCCTAGAGGACATCAAGATGACCTCAAATTGCATTTccataaaatgtacaataatatataaaacattgCAACAAATCACATTTGATGGCTTAAACGATGAAgcgattatcaaaatatttggtaatagattttcttttttctatcgACTTATGTCATATATGGGCACATGAGTATTTTGTTGAGACagacttggaaaaaaaatctgaacttatCCTTTTTAAATGACCAGTGAAAATGACTCCACAAATATCGTTTACGGAAAAGACCAGTTGCCTAAATGAAATGTGAAGTAGTGTTTAGATTATTGCGATTCCATTGCCTCGGTAGTGAATTTATTAAACATTTGATTGaatggaagaaaaagaaatctttGCCAAATAATTATTGTATGGTTTAatctccccctttctccctgTTGAATatacaacattatggaaatttAAAGCAGATTCTGCCTTTACATTTTCCTTCTTACTTTTTGTGTAACTTTTTTCCTGTAGTCGAGGTTTGTTTCCTGTTGCTGTGTGACTTGATGTCTTATTTTTACTGCTCAagtcttcttttttaaatctagaataaaaaacagaaaaacaaagtcatGCTGGTGATGTCGACTTATCTTAAGGCTCATGATAAAGAAAGGTCACGTGCAACAAAACATGTTTGTCTAATCGGAGCACGTGTGTGTTAAGCGTATGACTACAACGCCAACACATCGTGACAAGATAAAACTCGCCCTTTACTGCTTTTATCAGAAAATGTGCTGACTGCAGCACTGTGATTTGACTGGATCAGACGTTTTTAAAGCTGTTAAGATTTTGGTCAAGCCAGCACTGCAGTTTTTGTACACTGGATGTCTTAAAATGGGCAATAACACAAAGGGTGTTGGATTAAATGGGGACAAATATCTTAAACACACCTAGATTCATttcatgaggtgtgtgtgtgtgtgtgtgtgtaagtgtgtaacTAATACTGCAGTGTTTCCTTGACCATTTCTCTGCCCTGGTCTTGCCTTGTTGTGGGTGAACGGTGTTTATTTACCATTTtgtattttccatgtttttctgCATGACCTGTGACCCCCACATGTCGCCATGGTAACAATgacaggattttcttttttttttaaatgtaccaCTATGAGGGAAATACTGTGTGGTACATAtgaatttttaatttattgaagCAGTTGGTTTTCATTTGTGCACTGAACTGAACTCTTCTCTGGTCTGAACCTCATCCACAACACTTGATCTTTGCAATGAAAATGATATCAGGTgtgattaaaagaaataaaataaatcacaagGA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:1900176 negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131039 lncRNA upstream 150790 21743413 ~ 21744681 (+) True G97096
TU131003 lncRNA upstream 219122 21658550 ~ 21676349 (+) True G97064
TU131004 lncRNA upstream 219122 21658550 ~ 21676349 (+) False G97064
TU130979 lncRNA upstream 337740 21554953 ~ 21557731 (+) True lsm7
TU131133 lncRNA downstream 31907 21941105 ~ 21942404 (+) True G97170
TU131132 lncRNA downstream 33767 21942965 ~ 21944561 (+) False G97170
TU131135 lncRNA downstream 34884 21944082 ~ 21944561 (+) False G97170
TU131148 lncRNA downstream 88215 21997413 ~ 21997743 (+) True G97181
XR_005640290.1 lncRNA downstream 96577 22005775 ~ 22007353 (+) True LOC120565815
XM_039810145.1 mRNA upstream 42059 21851042 ~ 21853412 (+) True s1pr4
XM_039811757.1 mRNA upstream 303321 21578985 ~ 21592150 (+) True enc3
XM_039811756.1 mRNA upstream 314627 21577394 ~ 21580844 (+) False enc3
XM_039810656.1 mRNA upstream 323672 21559203 ~ 21571799 (+) True tmprss9
XM_039810655.1 mRNA upstream 337745 21554894 ~ 21557726 (+) False lsm7
XM_039811911.1 mRNA downstream 36978 21946176 ~ 21962548 (+) False tnfaip8l1
XM_039811910.1 mRNA downstream 36983 21946181 ~ 21962548 (+) True tnfaip8l1
XM_039811631.1 mRNA downstream 57994 21967192 ~ 21979558 (+) True LOC120565695
XM_039811778.1 mRNA downstream 88721 21997919 ~ 22000097 (+) True LOC120565765
XM_039811780.1 mRNA downstream 90999 22000197 ~ 22002659 (+) True LOC120565766
TU131036 other upstream 113471 21690897 ~ 21782000 (+) True G97093
TU130185 other upstream 2363794 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 3109835 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 4023060 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 4023624 17871710 ~ 17871847 (+) True LOC120566229
TU131315 other downstream 374448 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 576313 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 583759 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 662861 22572059 ~ 22572139 (+) False LOC120566218
XR_005640361.1 other downstream 663271 22572469 ~ 22572551 (+) True LOC120566227

Expression Profile