RNA id: XM_039810508.1


Basic Information

Item Value
RNA id XM_039810508.1
length 1734
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC120565108
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36237852 ~ 36284806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTTCATaagcctcctcctctcctctcttagcTCAGTCTGTCTGGAACTCTTGACGGAACTTGTCTTCACTTCCCGGGACTTCTCTCCATCATGACTCGGGTTTCTccggccgtgtgtgtgtggctgctgtTTGGGCTGCAGGCTGTTGCTGCGGTGAAGGCCCACTGCTTTCTTGTCCCACCAAAAAAACTAATGGAAAATGTAGACTACAccaaacaggaacatgttgccaGGATTCATTCCGATTTTGATGATGGGAATGGGAATATTGTATACTCTCTAGAAGGCAAGGGTGCAAACCAAAATCCCTTCAATGTGTTTGTAGTCAATCCTAGAAGTGGACACATTCGTGTCACCAAAATTCTTGACAGGGAATTCATGGATTCCTACATGctGACAATTGTTACTAGGTACAAGAATGGCAGCCTTGCAGAAAGCAACTTTGACCTACGAGTCCAGGTTGTAGATGACAACGACAACTCTCCAGTGTTTCAAGACATCCAGACCGGGGTGGTGAATGAAGGCAGTCCTGTAGGGACTACAGTTATGAGAGTAATTGCAACTGATGATGATGAACGAGGGAATAGGAACTCTCAGATCGCCTATCACATCATAGATCAGACTCCAGctcatgacatgtttgagatgAGCAAATCTGGATACATCCTTGTCAAAAATTCTGGCCTGGACAGAGAGaaaacagaTCAGTACGTTCTGACGGTGAGAGGTCAAGACTTAAATGGCGAACCAGGGGGAAACACAGGAACCGGCACAGTTACCATTGATATCCTGGACGTAAATGACAACTGCCCCGTCCTGACCACTGACTTCCACACTATGTGCACCACGGATGTTTCTGTCATTGTGAACGCTGAAGATAAAGATTCCTACCCAAACAGACCTCCTTTTGACTTTGTCATCATCCCAGAGGGCACTCAGGGCAAATGGCAGGTGAACCCTTTAAATGACACTGCAGCTTCCCTAAATGCCCAGGAATCCATGTGGCCTGGATTCTACGAGGTGAAATTTGTGGTGAGGGACAAGCAGGGAGAGGCCTGTCCAGACCCACAGAAAGTGACGGTCGAAGTCTGTACCTGTGTGGACGGGGTGGTGTGTGGAAAACGAGCCACCAGCAAAAAATCAGAGTTCGGACCTTTAGGCATCGGACTGCTGGTCCTGGgtctgctgctgttactacgtAAGTATGATGTGATGCTCATTCTGATGAAGTGGGCTAAGACATTTTACACCTTTGCTGTGCTCACGACAATCACAAGACAGGTCGAGTTTAGTCGTAGTCCAGTTTAGGCCAAAGACAAGGCCAgagtaaatgattcaaaaccaaGACCAAAACTAGGTCGAAGACAGTGAGCACATCTTTTCAAGTGTGAAATAataccaaaatgaagactggaacctttaaaggtcccatgacatggtgctctttggatgcttttatatagaccttagtggtctatAGAGTATTTCCTTTAACCTGTCACATCATCAGTTGAAAACTATTAATATACACAACCCCATACATAGTAAGTGCTGCCATATAGAGAGTAAAAAAGATGTTTGAGTACTTTAGATATGCAGGACACAGTAAGGTCTGACTCTGAATGGGCAGAACATGAAGACAAAGCCTGGGATGTCAGAGAAGTGGTCTCAATACAGGACTCAACATTAAGGACTTAAGCCTGACTGGCTGCTATCAGCTTATCACTAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135375 lncRNA upstream 93764 36143878 ~ 36144088 (+) True G100492
TU135341 lncRNA upstream 375525 35862007 ~ 35862327 (+) True G100462
TU135332 lncRNA upstream 429461 35808167 ~ 35808391 (+) True G100453
TU135233 lncRNA upstream 553626 35681729 ~ 35684226 (+) True G100383
TU135182 lncRNA upstream 758242 35478671 ~ 35479610 (+) True G100337
TU135410 lncRNA downstream 33969 36289449 ~ 36289686 (+) True G100519
TU135414 lncRNA downstream 36546 36292026 ~ 36292243 (+) True G100523
TU135415 lncRNA downstream 39658 36295138 ~ 36295493 (+) True G100524
TU135428 lncRNA downstream 167380 36422860 ~ 36423129 (+) True G100535
TU135431 lncRNA downstream 169112 36424592 ~ 36449148 (+) True G100536
XM_039810201.1 mRNA upstream 3253 36215464 ~ 36234599 (+) True dsg2.1
XM_039812351.1 mRNA upstream 500842 35699855 ~ 35737010 (+) False LOC120566096
XM_039812350.1 mRNA upstream 514016 35699825 ~ 35723836 (+) True LOC120566096
XM_039812352.1 mRNA upstream 516297 35699855 ~ 35721555 (+) False LOC120566096
XM_039812039.1 mRNA upstream 559423 35673360 ~ 35678429 (+) True ddx10
XM_039810510.1 mRNA downstream 6459 36261939 ~ 36267815 (+) True LOC120565109
XM_039810505.1 mRNA downstream 43062 36298542 ~ 36327378 (+) True LOC120565107
XM_039810506.1 mRNA downstream 43062 36298542 ~ 36327378 (+) False LOC120565107
XM_039812313.1 mRNA downstream 87815 36343295 ~ 36349730 (+) True ttr
XM_039810151.1 mRNA downstream 96463 36351943 ~ 36373606 (+) True b4galt6
TU135393 other upstream 9278 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 1730300 34504643 ~ 34507552 (+) True G100174
TU134878 other upstream 2359521 33875209 ~ 33878331 (+) True G100087
TU134831 other upstream 2968692 33267695 ~ 33269160 (+) False LOC120566032
TU134797 other upstream 3359237 32875382 ~ 32878615 (+) False nlgn1
TU135480 other downstream 218058 36473538 ~ 36475195 (+) True G100568
TU135471 other downstream 240004 36495484 ~ 36534539 (+) False smim24
TU135470 other downstream 277246 36532726 ~ 36534539 (+) False smim24
TU135631 other downstream 439957 36695437 ~ 36698869 (+) True G100671
XR_005640357.1 other downstream 876689 37132169 ~ 37132305 (+) True LOC120566223

Expression Profile