RNA id: XM_039810549.1


Basic Information

Item Value
RNA id XM_039810549.1
length 9529
RNA type mRNA
GC content 0.47
exon number 13
gene id nfic
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36563454 ~ 36594440 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAATGATAACGACCGACGGCGTGAGATGGGCAGGCGTTGACATCAGCTTTAACTTCCCCCGGTGGCGGCTCCGCTTCGAAATGTGATGAACCTTCTCTGGCGTTTCTCCCTGTGGagcctttctttttttccggAGCCTCAACTTTTCTGGCGTGTCATCATTTGTGGAGTTAGCGCGGCAGAGTCATCCGAGGCGAGCAGAGCTGCCTGATATATGGGTCCTGTGAaacagcggcagcagcagcccagGAAATGCAGCGTTTCTCCACTGATTTAGCGGGACCGAGCGAGTAGAAATGTGCGGGAGCGAACGGCGAGCCTCGGGACGTTTGCGGGCTAATTCAGCTGCTTCTCATCAGCATGAtgctttctcctctctctctgtctcagGATGAGTTCCATCCGTTCATTGAGGCTCTGCTGCCCCAGGTCCGTGCCTTTGCCTACACATGGTTTAACCTCCAGGCCAGGAAGAGGAAGTACTTcaaaaaacatgagaaaaggATGaccaaagaagaagagagagccGTCAAAGACGAGCTGTTGGGGGAGAAGGCAGAGGTGAAGCAGAAGTGGGCCAGCCGCCTTCTGGCCAAGCTCAGAAAGGACATCAGACCTGAATGCAGAGAAGACTTTGTCCTGTCCATCACTGGGAAGAAAGCTGCGTGCTGTGTCCTGTCAAACCCGGACCAGAAAGGCAAAATGAGACGCATAGACTGTCTCCGACAAgctgacaagGTGTGGCGGCTGGATCTGGTGATGGTCATCCTGTTCAAAGGAATCCCGTTGGAGAGCACCGACGGAGAGCGGCTGGTGAAGGGAGGCCAGTGCTCCAACCCAGTGCTCTGTGTCCAGCCGCGACACATCTCGGTCTCCGTCAAAGAGCTTGACCTCTACCTCGCTTACTACGTACAGGagagagaggcagagcagagcagcagtCCCAGTCGTACAGGAGTGGGTTCTGATCAGGAGGACAGTCGCACCGCCACCATGGATGGTCCAGAGTTCCAGGAGAGTTTTGTGACTTCAGGAGTTTTCAGTGTCACCGAGCTGGTCCAGGTCTCAAGAActccaGTCGTCACAGGAGTAGGACCCAGTTTCTCCATGGGGGAGCTCCAGGGTCATCTGGCCTACGACCTCAACCAGTCTGCCAACCAGCCAGTCAGCCTGAGACGATCACTGGCTAGCACCTCATCCAGCGGGAGTAAGCGACATAAGTCTGGCTCTATGGAGGAGGAGGCAGACAGTCCAGGAGGGGAGTATTACCACTCACCGTCCTCTCCTGCCAGCAGCTCCAGGAACTGGACTGACGACATGGAAGGAGGTCTGTCTCCTCCAGTGAAGAAGGCAGAGCTGGACAGTCCCTCTCCCCAGGAAGACTCACCAAGACTGGGCTCCTTCACTCAGCACCACCGGCCAGTCATAGCTGTTCACAGTgGCCTGTCTCGGAGTCCCCACCCTTCCTCATCTATTCATTTCCCGCCCTCGTCCTACTTCCCCCACGGAGCAATCCGCTACCCTCCTCACCTGGCCCAGGACCCCCTGAAAGATCTGGTCTCATTGGCCGGCGCCCCTGCCAATCAAAGCCCCAGCTCGCTGAATGGCAGCAACCAGGTCAAAGTGCTCAACCACTACATCTCCTCTCAGATGTTGGCACCGCCAGGACCAGCGTCCTCCCTGGCCCCTCCCCCGTCCCCCCTCCCCAGGCCTGCAGAGTCAAAGGCCACTCCCACCTCCTCTGATGGGGGAGCAAACTCGCCCACATCACCCATCTTGGTATCTGGGCAACTGAGCGACCTGTGGAGGAGGGCTGACTGTCATGGCAGTACTGTGCTGGAGGACAGGAAGCAGTGTGGTCCAGACATTGCCAGAGGGAAAATCTATTCATCTTTGTAGAAGTGTGCGCATACATCTATATAAATATCCAGTGGGatatatttctatatttgtATGAACCCAGAAGAGACGGTGGACAGAAAGAGCTTTGCTGCAAGACACTAAACGCTTCTTCCAAATGTCCTCTGACGTGAGCTGTGATGTTCCAGTGAGCTGATGAGTCTGGTTGGTCCCGATGAACTGcagaccagaaccagaaccagaaccagacctCAGCACCCCGTTCCTACGGTAACCCTAGTGTATTCCCTGGAATGGATATACCTGGGTCTCTACACTACATCCAGTAAAGGCCTCCTCCCTGGGACAGACACAGACCTCAcacctctcccccctccccccaacacCCTGAATGCCCCTCTCCGCTGCAGGTGCTGCTTATAATATATGCAAATAAGCCTCCCTTTTTTTCTGAAGCGACTAGAAAGAGATCCTGTTGTTGATTTGTACTGTTTCTTTGCACTTTTGAATGTGTTATGGATCGTCTGAAGaattcttttctctcttcccaCCAAAAAGACAGaggctttgtctttttttattgacaatCATCAGCCTGAAACAATTACGTTGCTTTGCTAAGCTCATGTTTTTAAGACTGTTTGATTGTGCTTTTTTATCCGAAAAACAATGAGTCATAGTGGAATATAAGAGCTATATTCATGTCCctccaacacaacacacaatgcTACAGCTGGACACCAGGGAAGAGTTGGGACATCTTTTTAATATCCTGCTGCATCCTTCCCTTCAGATAGCACTTATCCAAGCAGCCAGAGGCACCTGtagcatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgcgtgtgtgcgtgtgtgtgtgtgtatgtatttgtgtgtgtgtgtgcgtgtgtgtgtcgtccCTGCTCTGTTCTGAGGAGATTGTGTTTGGGGGTTTGTACTTGTATGTAGGTAGACTAGAGAGAGATTTAGCAGCGTTGCACTATGAGAAGGTAACGATGTTACCCAGCTGGCAGGCTGTGGTGTGTCGGCGGTTGCTATGACAGCAGGTCATGTGCACGCTGACTTGAACTGAGCACAAAATCCAGGTTTCTTGTCCAGAAGGCGTCCCTGACCAGTCTGTGGAGTAGCGTTGGTTTCAAGTCCAACCTTGATGGTTCACCACAAGTCAACGATTTCAAACCAGTCGGTTGCTTTTCTGCATCAACCTCGTATGCGACAGTTCTTTAGTGAGGAAACAATATTCTGGCTTTTCACAGCTTCATTTACTCAATaatcttttaaaatacatttaatagcTTAGACATGCTGCATTTTAACTTTTGACAAGGTTAGCATTTAATATGAGTCCCTGTCCGCACGTTCAAAGGAAGGAAGACAGAGCAAGATGTCTGCGTGCAGTGGTCAAAGATCTGAAGACAGAATCAAATTATCAAATGTATCATTTATTCATACTTCTCTGTGAAATGCAACAGTAGTAAAACGTGTCCTTGGCCTTTTGCTATTTCATACGCCATCTCTTTGGAGATGAAAACTCTGAATATAAATTAGAATTTTAGGAACTCATACTTTATAATGTGTGCCATATTTGAATCTCCAAGCCTTTGCAGCTGTAAAGCAGACTGGTGACATGTGTTGCCTGGGGATGTGGATCGGTGTTTCTGTGTTGAGGTGCAATCAGAATGAACGGCAAGCAAATTTTCACCTCCACGTTATTCACATGAATTTGTTTCTGCAGTCTGAAGACGTTGCTCCGTGATCCAAACAGCAATTTACGGCCGTGGTCCCACAGCTGTCTTCCATCTGGAAAGATCCAATGTTTTCTGAGGGTGAAACTAATATTTCCAACCGCTGCCGCAGTTAACTTTATTTGTCACTAAATACCGGAGCTCCACAAGGGTGTGTGCTTAGCCCACTGCTGTACTCAATGTACTGTGTACTGCTGGTAGAAGTCTGAGCAGCAGACCTAGTGTACATCCGGTGAAGCCGAGTGGAGCAGTGCTGCACGGTCAGTGGAGATATTGGATTCATACACTGTTTTTTATTGCTCCAGGCAGAAAGCAGACATCTGTGGGATCACAAAAAGCATTTGCAGATGTAACCTGCTGTAGTAAAAGATAACTACGGTAGTGACATTCCGAGTGAAGTGTGAACCCGCTGTAGAGAgcggctgtgtgtgtttgaaatcATCTCATATTTTCCTCCAGTCCTTTGTCCTTTAAAACGTTGTTTTCCATTCACACAGAAGCGTCTTTCTGTTGACTGCCGTGTCTAAAGTTCGGTTTGCGTTCGGTCTGATCACAGGGGTCTTTTCCGTTCCTTTTCCccgggttagggttagtgtcAGCGTCTGCAAGGCTTCAGAGTTCACACTGAAGGTGCCGATAGGAGCTGGGCTTTGGTTAAAGTTGGCTTCCAGCTGATGTACAGTGCATGGTGCTGCCCTGGTCGCTATGGCGACCAAATGAATGCATGGCTCAAACTGATGAtacctctccctctctatcctgCTCTCTATCCTCAGTGGATTGGAGGGCTGTCTCTTTCTTTAGATTTGTATAATATCCCTGTTATTAAACTTCTATTTTGCACGATACATCATGAAACACATTATGTGCCTTGCCTTTAGTTAGACAACAATAATACATTAAGGAAAAGTGGTCACACTTTTCATGGTACAGCTGGTAGCActtaaaaaacagcaacaaaaaaaagctgcaTGTGTGATGGCTCGACATGAAGCGGTGTAGCAGGTACACAGTGTTGGCTTAAACAGTGCAGTGTATGAAGCAGAGGCTGGGGGGGGCATTGCTTATCCTCTGCTACCATCACGCTGGACACAGTGGGAGGGGAAAGTCTGTACATTTGGGGGAATGACACTTGAGAGTCACATGGGAGGACACATTGTGGACCTGTTGTGTACGTAGTCCAGAGCTCTGCACGGAGCTGAGCTAACACATCCCAACCCTGACCTCCAGGTCATCAGCTGATAGGGTAGGTGTGGGGATTGGCCCACCACATAGATACTGTTTCACATGACCAAGTGAATCATCGCCATGACGACAGAGAGCTCAGAAACCTGGAGTCAAAGTGCTGAGAGACTAAAACTGGAAATAAGCTGTAGCAGCAGGTCTCGGACGTCCCTCCACTGTAAGCAGCTGATGTGGCTCAGAtcggtgtgcgtgtgtgtgtgtgtgtgtgtgacactgacAGTGGTGAAATGTTGCGAACCAAACACTATGGAAGGTCCTCCCAACACAAACCTCAGCTCTGCCTGCGTCCTGTTCTCACATGAAGTGTTAAATACACGATTGACAGTATTTATTGCAGGGAAAAGTCTTATTGTGAATATTTTGTCAGGCATTTAGCCAAAGTGGCCAAGCCACTCAACCCCATCTAATGGAGAGATGTTAAGCAGCTCTGTGATTGGCCACTGGAACACCGTCCATAAGATGACTCTGACCACATGACCAATCACGGCACGAGATACCACAAAGGCCATAGATGAGTTTGACTTTTATATGGGTGCATGCACGTAACACTATTCTTACTCTGCTTGGCATTCATGTTAGTCTTTAGTTATttcttgtgttgtttttattgtgttgcTTGTAGTATTATAGTTTTAAacactgcagtgtgtgtgtaaaatgtgtacAACATGGACTTATCAGTCATAAAGAAAGGATGAATAGATGTTTGAGATGCTGGCCAAGTAGCAGAGGAAGACCCGTGAGATGGGAGGAGTTAAGCTCAGCTGCGTGAGCGAGGACGGACCATGAAAGGCAAACACTGTTTATGGAGAGAGACAATGTTGGAAGTCGGGGTGAAGGGAACTAGAATGCTTAATATCTGACACTGGATCAGTGATGGACACTGAACACCGGTCAGTGGAAAGCCAGCAGACCTGGCTGACTCAGGTCCTGGGGCAGCTCTTGGATGGTAGTGGACCTCTCGTTAGTGAAGAGTGCTTTAGAAATGAGCACAggatacagatacagacacacacctgaaactaaataaaatatgcTCAGTAGTGACGATCAGAAAGCTCAGAACTCAGAGCTTTGTGTCTACTGAAGAGCTCGAGTCACAGATACCAGGCCGTTGTTTGAACTCCCTCTTTGAATCAAAGATATGTTGGCGGTAATAATGCCCTAAATGAGACAACTGTGGTGATCTGTGTCTCCAGCAGCACCAGGTATGAAGCTGGACTGTCACATGGTTGTTTCTGCCTGTGATGCACAACAGGAACCTGAGTGCAGGGCAACTAAAGTCTCTCTAGTTCAAATTGAAGATAACAACGAAACCAGCGTAATACTTTCTTGTAAATCAGCTGTCTCCCGCAGCACATCGTAGCACTGCTCCGTATGCTCTACCTGGAGCCAAGATCAACAGGGATGGAACTTGTGAGATGATGTACGCTCTATTTAAGCCGAGTCTGTAGGTTTCCAGGCTGTCAGGAGAGGTTTGCTTGTGTGTTGGGGCAGGTTTATGATTTGtgattctttttctctctcgctgACAGTAGAACATGCACAAAAGAGAGCCAAAACGCGTCCACAGCTGAGTGAAGTGTCTCTTCATTCCACCCTACAAAATGTACGAAGTAGAGACAGTCggttattataaatgaaatagCGAGTCCTACAGTAAGCCCAGGTCTCGATATCAAACTAGGCCAGATAATAACAATGATCAGGACATCTGGAGTCCAACGTGTGCAGAGCTGAGAATAATGTGTTCATCACATGCATTCAGCTTCTCACGCGAACATTGAGCTCTCCACTTTCTATTCAAATATACCAGCAGGTCAGCAACAAACAGAAGCAGTGCCGATCATTTGGCTGCTTTGTTCAGTGTCTACTGGGACATCATCAGACCTGGCCAGTGGAGATGGGCTGTGCAGGTTACAAGCCATAAAACAACCCAAAGAGTGGAAGGAACGTCTAGAGGAAACACTCACAGACTATAAATAATGTTCTTCATTTAGCTCGGATTGACAGATGTGACCTATTTTCGCCTTGGTGAAAAAAATAAGGTCACCAAAGACGGGAACTAGGGAACTAATCAGCAGCGTCATGCTAACCGATGAATAGCTAACAAGTATCTCCTGAATCTCTCAGCATACTGAGCTCACCAGGCTTTCCAAAAAGGAGACGCCTTGATCACTCCAGGTGCTCCTGCTGCAGTGAATGGATGCGTGTCGGCTCAGTGTCACGGCCTGCTGGGACACTTGAAGAACAGAGCCGTTGTTCATGTTGTTAGTAACAAAGCTTGTGCCGTCATCGTACTGAGTTGTTACTTGGTCATCAATGGCCGTCAATGAAAGGCCCCATTAGATCCTGACTGAAACGCATCTCTCCCTCTGTTAGTTACTGTTGAACAGCCTTCAGTCAACACTCTTGTTCTCCACCTCCTGACAGGTTCAGCTTTTGGAGATATAGtgcgtcccccccccccttgtcaGGAGACCGTTATTATATTCTCCAGGCACATGTGATGTTGGCAGTCGAAGCATTGGACCAGAAAGATGCTGCGCTGGGGAAAGGGAAATAGCCGGTGTATCGGTCCTTTTATATCCAAAGCACATTTTTACCTATGCTTAATTCCATATATCACATTAACTCATAAACAATAATGTGTGCCAAATAACAACTCAGTATAACGCACTATATAACATGAGGGACTTGAATAAGCAAGATGCAGTGTTTAGTTTATTTGAGGTATTCAGGCACAGTTTGCTACGTAAGTATCTACAGGAACAAATCATTACGTACTGCCTCTTTAACATCTATTGTCTACTTTACAGTCCTTGATTTATTCAGGAGCTATTGGTTAACTATGCATTCATTAGCACTTAGCATCAATCGGTTTACTGTTACTACCTTCTTTGCGTTGCCTCAGTTCGGAGCCAGAGTGTCCCATTTGGCAGTTGTCAGGATCCCCAGTGTACCTGAAGTATGGATCCACTTGATGCTATGTGTTAAACTTGGTCGAAGCTGCTGAGCTGACATGATTGGCAGGATGAAAAGTCACAAATCCTGCTTACTCTTATGGAAACATCCACTGTGGGAATGGTCTGTTTCTATTTAAGCGAGTTGGCTGCATGTTGTTAacgtgttggtgtttagttccCTCTAGATTTGTCTTCACTCTGCGGTACAAACCTGACCGCTGTCAGCACTGTTAGCAGAGAATAACCACATGGTTAGGATTCATCATATCAGAATCAGTAGTGTTTTAGGATTGGGATTGTCAGGTTAGGGTTAGTATGGTGAGCAGTTCTAACTGCATTGGTTCTAACTGCAGGCGAACAGAAGATCAGATCTGCAGAAAGGTTCCTATCTAACAATTGAGTTTTGGGTTGGGGGCATTTTTCATAGAGGGCTCTTTTCTACAAACGACTAATGCCATGTCACACTCTACCTTGCTGTTGCCTGAAAACCTTGTAACCTTGTAATCTTGTTTCTTTTTGCCGTTTCTTACTTGAAATGTATTTGTTAGTGGCCCTTCAAAGCCTTTCTGTAGTTCAGACTGGCAGCAGTTGGAAACCTCTGATCAGATTTTGTAGAGCTGCAGGTTTTTCCTGTGACGGTGATGCCATATTGATTCCTTTCTGTATGTGCGGGTACGTTGCTCCTGCACACCGCATAATCCATGTGCTGAAGACAGTTTGTAACCAACGAAGAGTTGTTTCTCAGAGAACATTTTTATGCAGTCTCATACTTTAAGGATTTTTCTTCTCATAACTTTTCAGATATTATAGTAAAGGACTGCTTTGCTTGCTTCCAGATATATATCCCTTACATCAGAGAGAGCATAGGCATGAACAGCTTCCATCAGTTATTGCATGACTCCAGTCCACACAGGCCACAGTCCTTTTCACTCTCACTGAACGTCAGGACGATCGGTAATCAATGATAGATGATAGGTACCCCAAGGCCCAGGTCATAAGTCTATTCTTTTCTAAATTGGAACATCTCAGAGTGCATTATCACACCATGGTCCCTTCCCAAAGAACCCATCAAAGAACCCATTCTGTACCAGAAGTTTCACATCTAACTTGACTAACTAACTTGATATTAActtgacagccaatcagaagacAAAGCATGACTTGCTATGCCAGTACAAGATAATAATAGTTGTCTTTCTTGTGTTCTGACATTGACCTGGCCGGAGACGCTCACTGTGGAAAGGGCTCTGCTCTGGACTGGATGTAGTTTGTAGCAGCTTCAACGCCAGCTTTGAGTACTTTTCCTTTGGATGTTTTTCAGCTGAAGCTAAATTCAATAATCGACCTTTATTTGCATGATGTAAAGTGTTCCTCTAAGACTGCATTGAGACAGGGACAGGACAGGATGTCTGAAGCAACACCTGTCTGTCCAGggtctgtctttctgtccctGTTTGAATGAGTGACAGCTGTCCGAACCAGTGTTTCTGACCTAATGTTGTTCTGCTGTGGGGGATATTAACATCTTTGATAATATGTCATTATAACCATATTTAGCCATTGCTATCAGCAAATGCTGATGAATTCATTACTGGAAATGAGTATGTTTCCCTATGCAAAAATATACCATCAATAAACAAGCTATACCACAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135478 lncRNA upstream 21449 36469528 ~ 36542174 (+) True G100566
TU135502 lncRNA upstream 32748 36529802 ~ 36530875 (+) True G100584
TU135492 lncRNA upstream 48817 36511245 ~ 36514806 (+) True G100578
TU135432 lncRNA upstream 77931 36483286 ~ 36485692 (+) True G100537
TU135464 lncRNA upstream 102153 36459521 ~ 36461470 (+) True G100557
TU135506 lncRNA downstream 14458 36608898 ~ 36611739 (+) False sass6
TU135517 lncRNA downstream 48466 36642906 ~ 36651890 (+) True LOC120565379
XR_005640229.1 lncRNA downstream 54901 36649341 ~ 36651890 (+) False LOC120565379
TU135627 lncRNA downstream 80009 36674449 ~ 36677928 (+) True G100667
TU135628 lncRNA downstream 84058 36678498 ~ 36678830 (+) True G100668
XM_039811781.1 mRNA upstream 29041 36532772 ~ 36534582 (+) True smim24
XM_039811782.1 mRNA upstream 29041 36532779 ~ 36534582 (+) False smim24
XM_039810154.1 mRNA upstream 141148 36409868 ~ 36422475 (+) True ctns
XM_039810155.1 mRNA upstream 141148 36411869 ~ 36422475 (+) False ctns
XM_039810151.1 mRNA upstream 190017 36351943 ~ 36373606 (+) True b4galt6
XM_039812354.1 mRNA downstream 1601 36596041 ~ 36611746 (+) True sass6
XM_039811841.1 mRNA downstream 110012 36704452 ~ 36712253 (+) True dohh
XM_039811842.1 mRNA downstream 110015 36704455 ~ 36712253 (+) False dohh
XM_039810322.1 mRNA downstream 118935 36713375 ~ 36720899 (+) True rsph4a
XM_039812100.1 mRNA downstream 130749 36725189 ~ 36741996 (+) True lonp1
TU135471 other upstream 29084 36495484 ~ 36534539 (+) False smim24
TU135470 other upstream 29084 36532726 ~ 36534539 (+) False smim24
TU135480 other upstream 88428 36473538 ~ 36475195 (+) True G100568
TU135393 other upstream 335049 36227087 ~ 36228574 (+) False dsg2.1
TU134982 other upstream 2056071 34504643 ~ 34507552 (+) True G100174
TU135631 other downstream 100997 36695437 ~ 36698869 (+) True G100671
XR_005640357.1 other downstream 537729 37132169 ~ 37132305 (+) True LOC120566223
TU135875 other downstream 869474 37463914 ~ 37490072 (+) True G100843
TU136417 other downstream 2282771 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 2866006 39460446 ~ 39464450 (+) False LOC120565708

Expression Profile