RNA id: XM_039810582.1


Basic Information

Item Value
RNA id XM_039810582.1
length 3195
RNA type mRNA
GC content 0.46
exon number 12
gene id csnk1g2b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14424219 ~ 14467288 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCATGACGCTGTCCCTGGCTATCGGCAGCTGAGGGAGGCTTAAAGAGACAACAGCAAAATCATAGCAACTTGAGGGCAACAGAAACGAAATGAGATAGACACCCACAAACGAAGAACCATGACTTCGATTCCCTTTCGATAGCTGAAATTGAAAGaTATCCAGCTGACATCCAACCCATCGGTTACCTGTCTCTCTCGTCGCTGTTTTCTCTGACTGGGTTGCCTTGTCTTCTGTGgccctgcaacatggagagtgTATACTGTGTCACTGAAGGCTGACCAGAAGGAATGAGGCACTCCACGAGATGTTCCCAAGTGGCCTTGTGGATGCAGTAGCTGGGATCGGAGTGCTTTTTTATGACTAGTATTGTATGTGCGTCTGTGGGCACATCCTAGCACAACCTGCCTATTCTTCAGGCAGGGACATGCTACTCTGAGACTGAAactaaagaaaaacacaagaaaggAGCCCCTCTGGTTAACAaggaacacaaagaaaaaagggaAGCACTCAGCAGAAGAGTTGCCTGATGGACACGCGGGGCACTTCATCTCATTTAAGTGTCTTCTAAACTATTGCACATTTTAACAGCAACACCTTTCCTCTGTCCTATGAGATTttgtctccctccccctccctaaAGTGTCATCTGTCGTTGTTATTGGAGCTTCTATGGTTTGCATGGCTGGAGAATAACCGTGGAGAGGCCAGGGTATCACAAGCTTATGGATTTTGATAAGAGAGGGGgcaagggagagacagaggaagggaaaAAGATGTCTAAGACAGCAGGCAGCAGGACTGGACATGGGGGCCGGAGTTCAGGGACCAATTCTGGAGTTCTTATGGTTGGCCCAAACTTCCGTGTGGGTAAAAAAATTGGCTGCGGGAACTTTGGAGAGCTGCGGTTGGGGAAAAATCTCTATACTAACGAATATGTGGCCATCAAATTGGAACCTATAAAGTCCAGGGCGCCTCAGCTTCATTTGGAGTATAGATTTTACAAACAGTTGGGAAATTCAGAGGGAATCCCTCAGGTGTACTACTTTGGTCCTTGTGGGAAATACAACGCCATGGTGCTGGAGCTGCTCGGGCCCAGTCTAGAGGACCTGTTTGATCTCTGTGACCGCACCTTCTCCCTCAAGACCGTCCTCATGATAGCCATACAGCTGATAACACGGATGGAGTATGTCCACACCAAGAGTCTGATATACAGAGACGTGAAGCCAGAAAACTTCCTGGTTGGGCGGCCAGGAAGCAAGAGGCAACACACCATCCACATTATTGACTTTGGTCTGGCCAAAGAGTATATAGACCCAGAGACCAAAAAACACATCCCCTACCGGGAGCACAAGAGTCTGACTGGGACGGCACGCTACATGAGCATCAACACACACTTGGGAAAGGAGCAAAGCAGAAGAGATGATTTGGAGGCGCTGGGTCACATGTTCATGTACTTCCTCCGAGGTAGCCTTCCCTGGCAGGGCCTAAAGGCGGACACTTTGAAGGAGAGGTATCAGAAAATTGGAGACACCAAACGAGCGACACCTATTGAAGTGCTTTGTGAAAGCTTCCCTGAAGAGATGGCCACCTACCTGCGCTATGTGAGGAGGCTGGACTTCTTTGAGAAGCCTGATTATGACTACTTGAGGAAGCTCTTCACTGATCTGTTCGACAGGAACGGCTATGTCTTTGACTATGAATACGACTGGGTCGGCAAATCACTTCCCACACCGATAGGCCCTATCCCCAGTGACGCGCCCGTGCAGCCCAGCAGCAGAGACAAAGCACAACAGCAGACCAAAAACCAGTCGCCTGAGCCCAAAGGAAGTGAGTCTCAGCCCACTCCAGTGACCAATAAGGAGACTCTGGGGTCGCACCTCACAGCTGAGCGGCTGGGGGGCTCTGTTCagGTGATGAGCTCAACAAATGGCGAGCTAAACACCGATGATCCCACGGCCGGACACTCCAACGCTCCCATCACCGCTCCCACCGAGGTTGAAGTGGCAGACGAAACCAAGTGCTGTTGTTTCTTcaaaaggagaaagaggaaagccCTCCAGAGGCACAAGTGAAAGAAGAAAACGGAGAGAACTTGAAACATTGTGGTCACTGTCAAGTTTTAAATGGAAGCAACTACACGGACTCCCTGTCCCTTATCTCTTTCCAGCTTCCCCCTCACCTCTTTATCCCTCTCACCTTATTCCCACTGTCACTGtacctccccctcccttcccttGCGCTCTCTTTCACGTTCTCAGTGCTCCTACTGGCGAGTTAAAGGAATGTTGCAGTCCTACTGACTCCACAACAGACTCTTGATTCCTTTATCAACGAAAAACAAACGTACCTGCATTACAATGGGGGAGGGGGCTTGAGaaaaagtatataaaaaaaaaaaaaagctgtaacAATGACACAACATGTAACAACTCGAATACCGTGGCGTGAATATGAAAAAAGATACTGTTTGAAACAGTTCTGTATTCTAGATTCCATAAGAACGCGTGTTGTTCCAACAGTCAGCTGTTGATCAGGGGGAACCATTTGAGTGGTTCAAGTGAAAGAAATCTGCTCCttaggaaaatgttttttgtttgtttttcttttcttcctttggtgtgtgttttgggaTCAAGGTAAAGAGGAAACGGTGAACTGTGCTGATGTGAAATCTGAGCGACACAGCATTTCATCTGCAAAACAGAATTTGGAGGAttttaacgttttttttgtaattgaatCCTCAGTTTTCAAAATCAAATCCCTGCATTGAAAACTTATTTTTATGTTGTAGTGTTTCTGGAGTTCAATTCTTTTCCTCACTCTGGCTTTCTTTTTGTCTGTCAACGTGGACTTTGTAGCACAGTCACTGGCCTCAGGTACTGTGGAAGATTGAGAGAAACAGATATTAAGctctcttattattattattattgcacttttgggaaaaaaaaacaattacagtGGAAAACTTTAGGTTTGAAATTaacaattaagaaaacaacttaaTAAAGACTGATCTAGGAAGAGTCCTTCACAACGCTTATATCTGAGTTAAGGCTGAAAAATGTTGTCGATTTacatggaagaagaaaaaaaaagatgtctttcgatttttatttcttacatcAAAATAATTTACCAGGAAATCATAGTTTGTGCCTTTCTAAGTAAAATGTTTAAAGCTCAA

Function

GO: NA

KEGG:

id description
K08958 CSNK1G; casein kinase 1, gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128645 lncRNA upstream 54993 14368922 ~ 14369226 (+) True G95372
TU128557 lncRNA upstream 160333 14258285 ~ 14263886 (+) False LOC120565959
TU128745 lncRNA downstream 79248 14546536 ~ 14639046 (+) True G95447
TU128779 lncRNA downstream 222094 14689382 ~ 14698562 (+) False LOC120565380
TU128778 lncRNA downstream 228394 14695682 ~ 14698562 (+) False LOC120565380
TU128781 lncRNA downstream 232262 14699550 ~ 14700145 (+) False LOC120565380
XR_005640293.1 lncRNA downstream 319780 14787068 ~ 14791606 (+) True LOC120565827
XM_039811694.1 mRNA upstream 1117 14418540 ~ 14423102 (+) True zgc:101100
XM_039811695.1 mRNA upstream 1117 14418540 ~ 14423102 (+) False zgc:101100
XM_039810167.1 mRNA upstream 14797 14391925 ~ 14409422 (+) True rexo1
XM_039810166.1 mRNA upstream 20034 14391912 ~ 14404185 (+) False rexo1
XM_039810168.1 mRNA upstream 20034 14392548 ~ 14404185 (+) False rexo1
XM_039810580.1 mRNA downstream 1756 14469044 ~ 14479067 (+) True mfsd12b
XM_039810581.1 mRNA downstream 1756 14469044 ~ 14479067 (+) False mfsd12b
XM_039810587.1 mRNA downstream 13166 14480454 ~ 14498574 (+) True si:ch73-61d6.3
XM_039810588.1 mRNA downstream 15491 14482779 ~ 14498574 (+) False si:ch73-61d6.3
XM_039812080.1 mRNA downstream 70288 14537576 ~ 14544528 (+) True babam1
XR_005640172.1 other upstream 1041475 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1203847 13173025 ~ 13220372 (+) True G95046
XR_005640174.1 other upstream 1323774 13005576 ~ 13100445 (+) True raver2
TU127781 other upstream 2979686 11429031 ~ 11444533 (+) False LOC120565923
unassigned_transcript_388 other upstream 3175572 11248575 ~ 11248647 (+) True trnam-cau_8
TU128764 other downstream 152070 14619358 ~ 14621413 (+) True G95460
XR_005640328.1 other downstream 343080 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other downstream 343080 14810368 ~ 14914033 (+) False dennd1b
XR_005640269.1 other downstream 1853206 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 3388349 17855637 ~ 17859152 (+) False nppc

Expression Profile