RNA id: XM_039810596.1


Basic Information

Item Value
RNA id XM_039810596.1
length 3996
RNA type mRNA
GC content 0.51
exon number 18
gene id pip5k1ca
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28027964 ~ 28084387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACCAGTTCAAGCTGACCTCTGCATGTGATAAAGAGCCTCCGGGAGGACACGCTGAGCTCCTGGCTGCAGATCCCTCGGCCTCCTGCAGAGGGAGACACACTGTCCAGCACAAAaaccaggcagcagcagcaagtgCGGTGCAACCGACCTGAGAGGAGCGGACGCTGTTCCGCCGTCGTGAGGAAACACCGCACAGATGAAGGGACCCTCGCGGATAACTATCACATATTCCTCCGTTTGATTATTGCTACACATCAAAAAACGCATTGTCCTTCCTCTCACCGGGATCGCGCCGTCGCTCTGAATCTTTCGTACGGAGGGCTTTCCTGTTTTTCCTCCGGGAGGCTGAATGGAAGCAGCAGCCGAGGGAGCGGTCGGGCTGTCCGAGGCCAGGGACGGGAGCCCTCTGTCCGGGGCCACAGCATCCGATGATGGGGACACCGTCGTTGGTGTTAGCTACGGGATGGACGCCACAGACATGGaTGCTGCCGCTAGGAAAGCCTTCATCACAGAGATGCCCTCATCCTCAGGCCAGCCTGGTCAGGGAAAGAAGATTGGCCACAGAGGGGTGGATGCATCAGGGGAAACTACCTACAAGAAGACCACATCCTCAGCCTTGAAAGGTGCCATCCAGCTGGGCATCGGTTACACAGTGGGCAACCTGAGCTCCAAGCCTGAGAGAGATGTGTTGATGCAGGACTTCTACGTGGTGGAGAGCATCTTTTTCCCCAGTGAAGGCAGCAACCTCACTCCAGCCCACCATTTCCCGGACTTCCGCTTTAAAACATACGCTCCCGTGGCCTTCCGCTACTTCAGAGAACTGTTTGGCATCAGGCCAGATGACTACCTGTACTCCCTCTGTAATGAGCCTCTGATTGAGCTGTCCAATCCTGGAGCGAGTGGCTCGGTCTTCTATCTCACGAGGGACGACGAGTTCATCATCAAGACTGTGATGCACAAGGAGGCGGAATTCTTACAGAAACTACTGCCTGGATACTACATGAACTTGAATCAGAACCCTCGCACTTTGCTGCCCAAGTTTTTCGGCCTCTACTGTGTCCAGTCGGGCGGTAAGAATATCCGCGTGGTGGTGATGAACAACGTCCTTCCCCGCGTAGTTCGCATGCACCTCAAATACGACCTGAAGGGCTCCACCTACAAGAGGCGAGCATccaagaaggaaagagagaaggccAGGCCCACTTTCAAAGACCTGGACTTCATGCAAGACCTGCAGGACGGACTGATGCTGGACCAGGACACATACAACGCGCTGGTCAAGACCCTACAGAGAGACTGCCTGGTGCTGGAAAGCTTTAAGATTATGGACTACAGTCTGCTGCTCGGGGTTCACAACATGGACcaggcagagagggagaggcagaTGGAAGGCTCCCAGGGCGAAAGCGATGAGAAGAGGCCCGTGGCCCAGCAGAAGGCCCTGTACTCCACCGCCATGGAGTCCATCCAGGGAGGAGCGGCCTGCGGAGGGTCCATCGACACTGACGACACGATGGGCGGTATCCCAGCTGTGAATGGAAGAGGGGAGAGACTTCTTCTCTACGTCGGAATCATTGACATCCTGCAATCCTACAGGCTAATCAAGAAGCTGGAGCACACATGGAAGGCTTTGGTTCATGACGGGGACACTGTATCAGTCCACCGGCCAGGCTTCTACGCCGACAGGTTCTTCAAGTTCATGAGCAGCACAGTTTTCAAGAAGAGCTCCTCTCTGAAGTCATCGCCATCCAAGAAGGGCCGTGTGTCGTTGTCAGTGCCTAAGTGTGCTGGTCCTGGTGCAGCCTGGTCAGCCAGCCAGCTCCCCTCGGAGCGAGACGAAAACATCTACGACCTGAGAGGAGCTCGCAGCTTCCCGACGCTGGAGGATGAGGGGCGACCAGATCTTCTTTCATGTACTCCTCCATCGTTTGAAGAGGCCACCACAGCATCAATTGCCACCACCCTCTCCTCCACCACCTCTCTGTCCATCCCCGAGAGATCCCCCTCTGACACTGCCGAGAACCCCCGCTACAGGAGGCACACCCAGTCTCTCACCCATGACGGAAGgACCCAGGAGGAGCTGCGGGTGCGTGAGGATGATCAGCAGACCATCACAGTGGAGGTGGAGTTGAAGAGACGCGACAGCGAGCCCACCCTTTCCGTTCCACAGCCTTCCCCTGAAACCAGTGAGGTCGAGGAAGGAGCTGGCACAGAGGCTGCCGACGCCGCTGCAGCAGCACCCTCCAGCTCTTCACCAGCACCTGAAgcggcctcctcctcctccttgtctGCCCCAGCTGCTCCCTCTTGTTCAGGGGCAGCCATTGAAGCCCCGTCCAGTCCCAAGGTAGTGATGGAGGCAGACAGGGCCAGCCAGATGTCCGGTTCAGGGTGCACCAGCCAGGCTTCAGtcgatgatgaagatgatgtgCCAATCACAGATATCTACTTTTTTCCTGATGGGAGGACCTGGGTGGTCTCTCCTTTCCGACAGAGGAGAAAATGCCAGTCCAGTTTACCACCTCAAGACGACAGGACCTGGGTGTACTCTCCGCTACACTATGGCTCAGAGTCTAAGGCCCTGCCAGATGGGGATTGGGAAAGAGAGACAGTAAGTGAGAAGCATCGGACTAAAATATAAAGGACAGGAGAAACAAATTACTTAGACAAGGAAAAAAAGTCAGCTGTGTTCGGTCTTCATTTGTGATAACAAGGATGGAAGGGATCAGTTGTAGCTTTACCTGCGTGAGAAgcttctacagtaaatataaaaCAAGCTTCTCATGTTCACAAGTGCTTGCTCTGCATCCAGAAACCCGTGACAACATTACAGCATCCATTCCTCATGAGTGGTGGAAATGGTCACTTGCAGCTCGCATGACCATTTAGTCCCCGACCAGCCATCCTGTGTCCCTCCAACAACAAGCTGCTCATCGGCCTGCGTGAAGCCGCTACACTCATGCATCACCACATTCCCACAGCTCATGCTGCTAGATGGTCACACTAAAGATATGTACATTAAACTCACAGAGGAGTCACGATTTACAGAACGTGGACATCATTTTGTTCAATCTTAGGCAATGTGggtgacttttttatgcaattatatattaatttaagcattttttttgtaatttaagcTTACTTAAAGAGTTTATTTTGAGTGTTaagatttaaattttaaatgttctcaCCCCAGATAGAGCTATCTGCCTATGagacaaagtgataaaaacgtggAGTCAAATGAGAATGAGCTCTGAGGTTTTATGTGGGGTTTTGTTTCGCAGGCTGCTGGTCTACTCTGTTCAGCGTAGCAGCATTCGCCCATACTGCTCTGATAAGGTGTCATCGGCCATTGAATTTTACCCCTACTCTTTTTATTATTCATCTTCTCACACACTTTACACCAGGAATGTCCCAAGCATGTTTTGCGCCAACATTCCTGATCAAGTCATTTAATAACCAATTCAGTTTTGGTAGGCATGTGTGTCAAAAGATGTTAGAAAATatctaaacataaaaaaaacaacgtgCCTAACTTAATCCCTGTTTCATAAAAACATGATGCCTTATGATGAAAGTAACTGGCTGTTGGGctttctcattttccagtttaCCAAATAAATACACAAGAGGCCACTATTTGATTGCAATTATGTAGCTGATACGGATGAATTCAGATATTTCATATTGGCTCAGGAAATTCTTACTTCATAGCTGCTCACTCAGAAACTTACACTGTTATGGTTTGATGTGTAATACATGAATGCATCTTCACTTTTCCTGGTTTTCAGTTACTCAgggtgtgtgtgcgctgtgttttttttcttttattttcctgtCTCCCCTTTATATTATAAATGCACTCTGATTAGATGGCTCACTGTTTCACTATCAATTGCAAGTAATGCATGAGAAGATACACAGTTTACACCCTggggaaataaaagcatgtgtaCACTCTGCCTAATACAtgcactctgtctgtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133277 lncRNA upstream 145653 27879317 ~ 27882311 (+) True G98770
TU133272 lncRNA upstream 168841 27855676 ~ 27859123 (+) True G98766
TU133269 lncRNA upstream 179026 27848733 ~ 27848938 (+) True G98763
TU133262 lncRNA upstream 195142 27832239 ~ 27832822 (+) False ncanb
TU133263 lncRNA upstream 367903 27659696 ~ 27660061 (+) False ncanb
TU133530 lncRNA downstream 230927 28312594 ~ 28318888 (+) True G98972
TU133553 lncRNA downstream 367876 28449543 ~ 28460166 (+) False LOC120565132
XR_005640191.1 lncRNA downstream 375326 28456993 ~ 28460210 (+) True LOC120565132
TU133552 lncRNA downstream 375326 28456993 ~ 28460166 (+) False LOC120565132
TU133572 lncRNA downstream 487981 28569648 ~ 28570858 (+) True G99007
XM_039810604.1 mRNA upstream 726 28021945 ~ 28027238 (+) False gpx4a
XM_039810603.1 mRNA upstream 726 28021947 ~ 28027238 (+) False gpx4a
XM_039810605.1 mRNA upstream 726 28023712 ~ 28027238 (+) True gpx4a
XM_039810563.1 mRNA upstream 10276 28000091 ~ 28017688 (+) True arhgap45b
XM_039810562.1 mRNA upstream 30550 27972998 ~ 27997414 (+) False tjp3
XM_039810097.1 mRNA downstream 4223 28085890 ~ 28090584 (+) True LOC120564862
XM_039810095.1 mRNA downstream 9038 28090705 ~ 28098805 (+) True march2
XM_039810096.1 mRNA downstream 9041 28090708 ~ 28098805 (+) False march2
XM_039810098.1 mRNA downstream 29918 28111585 ~ 28127231 (+) True LOC120564863
XM_039810099.1 mRNA downstream 29918 28111585 ~ 28126747 (+) False LOC120564863
TU132947 other upstream 1232225 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 2008593 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2295787 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 2480875 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 3154090 24868017 ~ 24873874 (+) False elovl1b
XR_005640167.1 other downstream 55602 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 690721 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1581966 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2345836 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134237 other downstream 2728851 30810518 ~ 30811236 (+) True G99545

Expression Profile