RNA id: XM_039810616.1


Basic Information

Item Value
RNA id XM_039810616.1
length 1929
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC120565156
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18715754 ~ 18733910 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaagtgacatCATGCAGGAACTCACAGTGCACCTATAATGTTGCTTCAGCAGAACAACTCAATCTCATCGAGCAGACTgctaacatttttgttttgtaatcTGAGGTACATGTCATGAAAAAGGATTAAAAGACTGAAAATGACAGATGTAAAGGCCGCTGAGCTCATCTTCATTTGTTTCATGCTGCTTCAAGGTTTTGTGGCATCATTGAACTGCACCAGCCCAACTCCTGAATCCTTGGTTGATGCCCTTGAGAATAATGTATTCCCTAAAAAACTAGTGCGACCTGTAAAAAGCTTTTCAAGTCCAGTTAACATGACCATTGGTATCACTGTGGTGGGAATTATAGGAGTGGATGAAAAATCCCAAATCCTAACAACATTCTTATGGCAAATTCTGGAGTGGAACATAGAGGGACTGAGCTGGGATGAGGAGGAATGTGGAACTACAAGAGTCTCTGTTCCTCGAGAACAACTTTGGGTCCCAGACATCAACATCGCAGAGTAcatggATGAAGACAAAGCTCCCAAAACTCCCTATGTCTACTTATACAACACAGGTCATGTATTTGATGTTAAGTCACTCAGAGTGGTCAGCTCCTGCCGATTAGTAATCTACACTTTTCCCTTTGATATCCAAAACTGCTCTCTGACATTTGGACCATATCTACACTTTGCTACGGACATAAGGATGATTCAAGGCCTCACGTCTGAAGAGATCCTAAAGGAGTCCCAAGATGTGTTGCAGACCAATGGGGAGTGGGAGCTCGCAGGTATCAGTGTAGCTCCTTCTACCTTGACGTTACATGGGGGAAGCTACTCTGAGATCAAATACTATATCATTCTGAGACGTAGGCCAGTGCTCTATGTGGTGAACCTGCTGATCCCCAGCTGCTTCCTCATCACAGTGGACCTCTTCAGCTTCCTGCTGCCTCCCCAGACTGTGGACCGCTCCTCCTTCAAGATGACCCTCATCCTGGGCTACACCGTCTTCCTGCTCATCATGAACGACCTGCTGCCTGTCACTGAAGAGACAACACCTCTCATCAACGTTTTCTTCTCCATCAGCCTCGCTCTGATGGTGGGCAGCCTGTTGGAGACGGTGTTGATCACTAATATCCAGTGCAGCTCCAGCCAGTACAGTGCGGTGCCTCGCTGGCTCAGTGTCCTCGTGCTACGATATCTGGCTGTTGTCGTTTTTCTCCCTCGAAAGAAAAAGAGCAACCAAATCACTGTCTTCCTCAACCCATCTCTTAGagTAAAGAATTCCAGCAAAACCGACATCTCAGCGATTCATCTTCAGCCCGTCTTTGGTGATACACCTCCAGTGAAACCCCCCCCAGAGCCGGCCCTGGATGAACTGAGGAAGCTGAGCAGAGATCTCCTGGCCATACGCCTCCAGGTAGACAAACACTTCCAGGGGAGTGAAACCTCGCAGGAATGGCAAATGATCGGGATAGTGATCGACCGTCTGCTGTTTGGCTTGTACATTGTCTTCATCGCTGTCAGCTTCATCACCATCATATGTCTCTGGAGCAAACATTATGCAGCATGATTTAACCACAGGGTTATACGCATGATTGACATATCAGCAGATTATATGCTGTATTCTGAGATGTGGCACATGTTGATAACTCTGTTGATAACTCTGTTATCAACATGTGGAATACACAGGATACAATGTAAGTTTCTGGATCTTGAGAGTTGTATTTGTCAAAGATTTGAAGAACATGGATTTTCATATATACAGATGACGTTTTAGATTTACATGCCTTCATTTCTCCTTGCATTGACTACTGTCTGCCACCAACCAAAATTGTGGTGAAAGTTGCTAAACAAATGTTTTAAACCCTTGTGTTGGCTTCCCGTCAATCATGcaaagttttgtttttctgggtcaaaatttgaaataaaaacttttttcccCAA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129984 lncRNA upstream 50641 18664577 ~ 18665113 (+) False nmur1a
TU129986 lncRNA upstream 55873 18659642 ~ 18659881 (+) True G96372
TU129966 lncRNA upstream 94412 18619558 ~ 18621342 (+) True G96361
TU129967 lncRNA upstream 94412 18619558 ~ 18621342 (+) False G96361
TU129956 lncRNA upstream 102494 18613029 ~ 18613260 (+) True G96353
TU130030 lncRNA downstream 10606 18744516 ~ 18744857 (+) True G96398
TU130032 lncRNA downstream 15210 18749120 ~ 18751861 (+) True G96399
TU130057 lncRNA downstream 48284 18782194 ~ 18859921 (+) True G96417
TU130082 lncRNA downstream 290373 19024283 ~ 19029464 (+) True G96438
TU130094 lncRNA downstream 322431 19056341 ~ 19057812 (+) True G96445
XM_039811542.1 mRNA upstream 3289 18701894 ~ 18712465 (+) True LOC120565635
XM_039811541.1 mRNA upstream 14387 18689219 ~ 18701367 (+) True LOC120565634
XM_039812101.1 mRNA upstream 30006 18684198 ~ 18685748 (+) True LOC120565951
XM_039812102.1 mRNA upstream 32357 18682070 ~ 18683397 (+) True LOC120565952
XM_039810219.1 mRNA upstream 51131 18646703 ~ 18664623 (+) True nmur1a
XM_039812453.1 mRNA downstream 114327 18848237 ~ 18857457 (+) False LOC120566166
XM_039812452.1 mRNA downstream 114333 18848243 ~ 18857894 (+) True LOC120566166
XM_039811543.1 mRNA downstream 177977 18911887 ~ 18917474 (+) True LOC120565637
XM_039812457.1 mRNA downstream 186228 18920138 ~ 18945814 (+) True ppp1r2
XM_039810613.1 mRNA downstream 216290 18950200 ~ 19004281 (+) False LOC120565155
XR_005640349.1 other upstream 843343 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 843907 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 846952 17868666 ~ 17868802 (+) True LOC120566228
XR_005640350.1 other upstream 849073 17866548 ~ 17866681 (+) True LOC120566215
TU129832 other upstream 856602 17855637 ~ 17859152 (+) False nppc
TU130059 other downstream 48690 18782600 ~ 18785636 (+) True G96418
TU130185 other downstream 796857 19530767 ~ 19531677 (+) True G96513
TU131036 other downstream 2956987 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 3549736 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 3751601 22485511 ~ 22488103 (+) False LOC120565764

Expression Profile