RNA id: XM_039810629.1


Basic Information

Item Value
RNA id XM_039810629.1
length 3056
RNA type mRNA
GC content 0.51
exon number 14
gene id scyl3
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24481703 ~ 24488751 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTTACCGGAAGAGTCCGTGTTTACAGCGCAGCTTTCGCTCCACGTTAGCATCGTTGATTCGTCAACAAGTGAATAGGAATTTATGTTGTTCACAGTTTGATCATTTTGTAAAATTACGTATTTAATTTTGCGCCACGCCGCGTTTAGCATGGTTGTTTGGAGGCGGAAGGGCAACCGACAGGCATAGCAATGACGAGCTGGCTAACGTAGCGCCGAGGTGCAGGAACAAGCGCGGCCATGGGTGCGGAGAGCAGCGCGTTGCGGAGCTTTACCCTGGAGGAGCCGCTTCTGACCCTGCCCTCCGGACTCACCATGTACTCGGCGAAGCTCCAGGATGGAAAGCCTGCGTCCGTGTTTGTTCACAAGCGGGGCAATGAGGATAAAGTCAACAAAGCTGCCAAGcacctgaAGACCTTGAGGCACCCATGTCTGCTTCGTTTCCTGTCCTGCTCAGTGCAGGACGGCGACATCCACTTGGTGACAGAGCGTGTACAGCCTCTGGAACTGCTGCTGGACAGCCTCTCCCCAGAGGAAATCTGCGCAGGCATCTACGACCTCCTGCAAGCACTTGTGTTTCTGCACGAGAGGGGCAAATCAAGCCACAACAACGTCTGCATTTCATCTGTATTTGTCGGTGAAGACGGTCATTGGAAACTGGGAGGGATGGAGACTGTCTGCAAGTTCTCTGAAGCAACGCCTGAGTTTCTTGCAAGCATTCAGAACGTGAGGGAGGCCAGCTGCGTTCCAACAGAAGAGCAGGTTGAGGGCTTTAAAATGCTTCCGGATAAAAATGCTCACTCTCGGGACTCTTTCTCTTTTGGAATGATGGTAGAGACCCTCATCCCTCTCCTGAATGGCTACGTGTCACAGGAGctgtacgacagtctgcagaaGACTCTGCAGACGGGCCTGCTGAACTCTGACCCCTTGTCTCGACCCCCACTCAGCTCCCTGCtgactcatgactttttcagGAACGACTTTTTGGAAGTGAGGAATTTTCTGAAGAGCCTGACCATGAAGACGGAAGAAGAAAAGAATGAATTCTTCAAgTTTCTTCTAGACCGGGTCCAGAGTCTCCCTGAAGAGCTGATAGCTTCACGCCTTGTCCCCAAACTCCTCAACTCTCTTGTTTTTGCAGAACCCATGGCTGTGAAAAGCTTCCTGCCTCATCTTCTAAGGCCAAAGAAGGATTCCAGTGGTGGCGGTAACGATGAAGAATGCCTGCTGTCTTTGTCCCTTTACCGTAAACACGTGATTCCTCAGCTTCTCAAGCACTTCAAGATCAACGAGGAACACATCCGGATCGTGTTGCTGGCTCACATCCACATCTACGCCGAGTACTTCTCCCACGATGAACTCAAAAACCAGATCCTACCTCAGGTTTTGTTAGGAATGAGAGACACCAATGATTCCCTGGTTGCCATGACGCTGCAGAGTCTGGCAGTGTTGGTGCCCTTGTTGGGGGCTCAGGTGGTGGTTGGTGGAGAGAGGACCAAGGTCTTTAAACGCACCACACCCAACTTCACCAAGTCTACAGAGGTCACTCCTGAAACTTCACCTGTCCATATAGTTGGAGGCCCCCACCCTCAGATGGCCCAGCCTTCAAAGGTCTTGAATTTGTTCCCCAGACCGTCGGGGACTGAAGGCCTGGTCCTGGGTCACATGGGTAGCTTAGGGGGTAGTAGGGTGACACCAAGAAGTTACTCTCTGCCACCAAAATCAGAGGGCAGTAGACAGATGTCTCTACCTTTGAACGGCTTTCATCAGGACCGTGAGATGGAGCCGCTGTCACCCAGCCCAGAGCAGCCCGACAGACTTGAAGGTCCAGCGGAGGACTGGCCCGACTGGAGCGACCCTGAAGAGAGCGAGAGCAGGTCTGGACAGTCAGTCCAGATCCACATTCAGGCCTCAGAGACAGAAGGTCCAGACAGCGGCAGGCTGCCACTCTCGCGCCCGCACTTTGAAGACGAGCCGTGGGACAACTTTGAGGACACTGAACCTACCTCAGATCTCTCCCCTACAGCTCCTTTATCAGACCCAGTTATACTCACAGCGCCCAGAGGCGACACTTCTACGCCTGATGATCCGGAAGCTCTGCCGCTGGGTGCCTCCAAACCCCTCAAGTTGACCTCAACACTGCGACAATCCACACAGAGCAAGACCACTTCCTGCGATGGCTGGGCTCAAGAAGAGAGCGACTCGCACAACCCACTGAACCCCAAGCCCAAAGCTACAGTGCCACGAAAGAATGGTGGGAGAGGAGGTCTTGGGGAGGAGTTCACCATTAaggtgaagaaaaagaaagcgcCGGACCCAGAGCTGGATTTGTTTGCAGACATGGTGCCGGACATCAAACTGTCCTCTCCAGCTCTGCTGCCACTGGAAGAGAGCAGTGTGAGCGACGCTGGACTGTCTAGAGCCTCTTCAGAAAACATTAAATCTCTGCAGGTTGACTCATCCATCGATACTGTAACACTCACTGCCAAGTTCGCAGTTGCCAACCTGACTGAGACTGAAACCGATGGCTGGGGAGATGGAGATGACCTGAACTGGGAGGAAGAGACTGTCTGGTGATGTTTGAGCCATCTGCTTCATTTGGAGCAACAGAACACTGGAAAACTCCAATCCTCATTTCAGAGAGTCAGCTGGAGGTTAACTGCATGATGCAGTAAGATAATGATGGGCTGAGACTTTTTATAACCTATTCTGTTGATTCCTGGACATTATCAGTCTGTTAAGTTACTGGAAGGAGTGGAAGCTTATAGGATGGTGCTGGACTTGGACAAATGACGCCATGTTTAATTGTTTGCCAACTGATACTAGTCACCTCAATATGAATGTCATCTTGTTTTCATCTGCTTCTCaactctttttttgttgttgttttttttgtacgtGCCAACTTCACACCTGGCATGAAAATCAAGATATACTTTTTTGGCAAGGATTGACTACAAAGGCTTGCACTTTGAATGACTGTACAATAGAAATTACGTAATTTATTAGCTTTTGGTTGCTGGTGAAGTAAAGATTTTGCTGTATCAAATATGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640189.1 lncRNA upstream 116528 24309609 ~ 24365175 (+) True LOC120565067
TU131983 lncRNA upstream 225622 24254470 ~ 24256081 (+) True G97807
TU131964 lncRNA upstream 267844 24211860 ~ 24213859 (+) True G97789
TU131962 lncRNA upstream 272413 24208229 ~ 24209290 (+) True G97788
TU131961 lncRNA upstream 273602 24204365 ~ 24208101 (+) False cks2
TU132089 lncRNA downstream 23220 24511971 ~ 24513033 (+) True G97896
TU132146 lncRNA downstream 149715 24638466 ~ 24642085 (+) True G97938
TU132243 lncRNA downstream 260277 24749028 ~ 24765225 (+) True LOC120565649
TU132259 lncRNA downstream 296045 24784796 ~ 24785342 (+) True G98014
TU132260 lncRNA downstream 298580 24787331 ~ 24787540 (+) True G98015
XM_039810520.1 mRNA upstream 193014 24287104 ~ 24288689 (+) True foxd2
XM_039810519.1 mRNA upstream 200639 24278396 ~ 24281064 (+) True foxe3
XM_039811050.1 mRNA upstream 273562 24204341 ~ 24208141 (+) True cks2
XM_039811047.1 mRNA upstream 298675 24168358 ~ 24183028 (+) True ankrd24
XM_039812450.1 mRNA upstream 344189 24133664 ~ 24137514 (+) False s1pr3a
XM_039812307.1 mRNA downstream 26683 24515434 ~ 24519540 (+) True sele
XM_039811884.1 mRNA downstream 31883 24520634 ~ 24524358 (+) True LOC120565835
XM_039812319.1 mRNA downstream 35722 24524473 ~ 24531588 (+) True LOC120566076
XM_039812321.1 mRNA downstream 35722 24524473 ~ 24531588 (+) False LOC120566076
XM_039812320.1 mRNA downstream 35742 24524493 ~ 24531588 (+) False LOC120566076
TU131697 other upstream 1003885 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1159794 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1905501 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1906555 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1906779 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 293167 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 363550 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 379266 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1044074 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1241507 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile