RNA id: XM_039810691.1


Basic Information

Item Value
RNA id XM_039810691.1
length 8348
RNA type mRNA
GC content 0.47
exon number 32
gene id si:ch73-63e15.2
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27894716 ~ 27971455 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAATATTTTTTCGCTATTCAAAATGGCACCGTCTTAATCAGGAAGTGGAGAAAACAACTAAGAAGAATAAGTTGGATAAAATCCCTTATTTCTGTTACTTTGACGCGAGTCTTCTTTTAAAATCAGCCGGTGTGCCCGTGGTTTGGATTGAGAATAAGAAACATATTGACGGTCATGGAAAGCGTTTGCCCTTGTTAGAAGTACTATCTCAGACACAGCCAACGTGTGTGCGGCGGTCGGAGGGTGCATAGCCTAAGTCAGCTGGTGGTCATGTGTGAAGCTCTGGTCTGATGCCCACCCTGCCCTCAGCGCTGGCCATGGACGGGGAGAACTACCTGCATCCAGAAGGCCCTCAGCTGGACAGCAGCTTGTTCTCTGTGGCCACCTCTAACATGGAGaGTTCAATATATGCCTCCTCTGGTTCCTGGGGACCCTATCAGCAGGCTGGATACAGCATACACTGCCCTATGCAATCTGGAAACCAGCAATACCACTTGAACAGCAGcactaccaccaccactccgGATGTGCCCATGGACATGTACTCGGGATTCCCTGACGTGGACTTTGGCCTCAACCTCCCTAGGAATGGAGACTTCTCTCAGGACCTGTCCTGCATTGATGACCTCTCCACAAACTCTCTGTTCTCCTCTCCGGCTGACTCCCTGTCGGAGTATGCTGATGCCCAGCCCTTCATCAGCCCAGACAACCTGAACACAGTGCCCACCCTCTGGGACATCAACACTAGTACCACCACTGTACCAGCACAGAGCCAGTTAGAgCTGAATGGCACCAGCAGGTTTCATGGCTTGGCCAGTTTGGATGATATAACTGCTATTATCAGCACCCCACCTTTAGGAGGATTCCAGCCTCAGAGAACCCAGTCACccccagaggaggaagaggatgctgaggaagaggagacagaggaactGGGACATGTAGACACATATGCTGAGTACAGACCTTCCAAATCCACTATAGGAATTTCTCATCCTGACATAGTGGTGGAGACCAACACGCTATCCAGTGTCCCTCCTCCTGACATCACATACACTTTGTCTATCCCTGAGGCAACTATTAACCGTGGCCTACTGTCAGCTCTGCAGCTAGAGGCCATCATCTACGCCtgccagCAACACGAGGTTATCCTTCAGAACAACCAGAGGGCAGGCTTCCTGATCGGAGATGGAGCAGGGGTCGGAAAGGGACGCACCGTGGCAGGAATCATCCTGGAGAACTACCTTAAGGGAAGGAAGAAATCACTATGGTTCAGCATATCCAATGACCTGAAATTTGATGCAGAGAGGGATCTCAAAGACATAGATGCTCAGAATATTCCTGTGCATGCCTTAAACAAGATTAAGTATGGAGACACAGCTACCTCAGAAGGAGTCCTGTTTGCGACTTACTCTGCGCTGATTGGAGAGAGCCAGGCAGGAGGGCAGCACCGGACGAGAATTAAACAGATCATAGATTGGTGCAAGCCAGACTTTGACGGAGTTattatttttgacGAATGCCACAAAGCCAAGAACGCCACATCTACAAAGATGGGCAAGGCGGTGCTTGACCTGCAAAACAAGCTGCCCCGGGCCAGAGTGGTGTATGCCAGTGCCACAGGTGCCTCTGAGCCAAAGAACATGATCTATATGAGCCGCCTGGGGATCTGGGGTGAGGGCACGCCCTTCAGAGCCTTTGATGACTTCCTGCACGCCATCGAGAAGAGAGGTGTCGGTGCCATGGAGATTGTTGCCATGGACATGAAAGTGAGCGGGATGTACATCGCCAGGCAGCTTAGCTTCTCAGGGGTGTCTTTCCGCATTGAAGAGATCGCACTGGACAATGACTTCAAACTGGTCTATAACAAAGCTGCCATACTGTGGGCGGAGGCGTTGCAGGTGTTCATGCGTGCAGCCGATGAGCTGGGCCTGGTCAGCAGGAAGTCTCTCTGGGGGCAGTTCTGGTCGTCTCACCAGCGCTTCTTCAAATACCTCTGTATCGCCGCCAAGGTCCGCTGCCTGGTGGAGCTGGCCCAAAAGAGACCAAGGTGCATCGTTATTGGGCTGCAGTCTACTGGAGAGTCCCGAACCAGAGAAGTCCTGGATGAGAATGATGGGCATCTCGACAGATTTGTCTCTGCAGCAGAGGGAGTGTTCCAGTCTCTTGTAACAAAACATTTCCCTTCAGagaaacagaggagagagaaggcaCCAGGGAATAAGAGAAAACGGAAGCCTAGAGGTCGCCAGCCCAAGGTGCCCAAGCACACCATGGACAGCGGCGGTGTGATCAACATTAGCGACGACAGCAGCAGTGACTCCGATGGCATGGACACAGACTCCAACTCCTCACCAGACTCCCTGCTAGACAATGATGATGTCATCTTTGTTAACCACACTAGCTGCCAGACAGCCCGGATAGAGGAGATGAAACAGGGCCTCCTCAATAAAATAGCCATGCTGGGAAAAGAACTACCTCTCAATACCTTGGACGAGCTCATCGATAAGTTTGGAGGACCAGATAAAGTCTCAGAGatGACCGGTCGTAAGGGTCGTGTGGTGCGGTGTCTTGATGGCAGCGTCCGTTATGAGTCACGTGCTGAGCAGGGTCTTACCATCGACCACATCAACATCAAGGAGAAAGATCGCTTCATGGGTGCAGAGAAGTTGGTGGCCATCATCTCCGAAGCGGCCAGCTCTGGGATTTCCCTGCAGGCGGACAAGCGAGTGAAAAACCAGAAGCGCAGGGTCCACATGACTTTGGAGCTGCCTTGGAGTGCAGACAGGGCCATTCAGCAATTTGGTCGCACCCATCGGTCCAATCAGGTGACAGCCCCAGAGTACATCTTCCTCATCTCAGAGTTGGCTGGGGAGAGACGTTTTGCCTCCATTGTGGCTAAGAGACTAGAGAGCCTGGGTGCATTGACGCATGGAGACAGAAGAGCCACAGAATCAAGAGACCTGAGCAAGTACAACTTTGAGAACAAGTATGGTACCAAGGCTCTTGATAAAATCACCAAAGCAATCCTTGGCCACATAGAGAACAAGGTGCCCCCTCCCAAAGGCTACCCTGGGGGTGATGCCACTTTCTTCAGAGACATGAAAATTGGAATGATGGATGTGGGCATCTTTTGTCGAGAGTCTCGCTTTGGGATCAGTACTGAGAAAGACTGCAGCATCACCAAGTTCTTAAATCGCATTTTGGGCCTGGAGGTCCACAAGCAGAACTATCTCTTCCAGTACTTCACCGACAACTTTGACTATCTAATCGAGAAGGATAAGAAGGAGGGCAAATATGACATGGGAATCCTAGACCTAGCCCCGGGTAACGATGAGATCTATGAGGAAAAGCAGGAAACTTTCTTGACAGTTGGAAACCCTCAGGATGGACAGGTTGTTCTCTATAAGATCAGCGTGGACAGAGGCATGCCCTGGGAGGAGGCCTTCAACAGGTCACTGAAGCTCAGCGGCCCTGACGAGGGATTCTACCTGTCGCTGAAGCTGCGAGGTAACCACCCATGTGTGCTGCTAGCTGAGCAAGGAAGAGGCAAGAACCTGATTGTCTACAAGCCTAATATTGGCAAGCAGACCCATCCCGAGAGCCTGGACAACCTGCAGCAGCGTTACCGGAAGTCAACTCCGGAAGAAGCCAGGGACAGCTGGGAGAACCAGTTCACCTTCTCCTTCAAGAAGTGTAGTCATGCCAACTGGAATGGGAAGTGTAAGAAAATAGAAGAAGGTCAGGAGTGTTTGCAGGGCATGCGCCTCCGCCAGTACCACATGTTGTGCGGTGCTCTGTTGCGTGTGTGGAAGCGCGTATCCGATGTGGTGTCTGACATCACCAGCTCCAGCATCCTGCAGATTGTCCGCCTTAAAACCAAACAGCATAACAAGCAAGTCGGTATCAAGATTCCAGAAAACTGCGTGGCCCGTGTGCGCGACGAGCTGTTGCAAATGGACGAGGAGGTGAAGCGGAGACGAAAGGAGAGGGAGCAGCAGGCCGCCGAGCTGCGGCTGGTTGAGGAGCGCAATCGTAAAATGGAGCAGGAGAACAAACACCTCCTGGCAAATCTGTTCAACTCGAAGCCCATGCTCAACCACTCCCTCGTTCGGTCTCTCCCCCAGAATCAGATCTCTCCGCAACAGCGACTGCAAGCCCAAACCCAGTCCCCTTTACAGCAGCCCTCCCAGAACTTACCCCTGTCCCTACAGAGAAATCCCAGCCAAACCCAGCAAAGGACCCACATCTGGCCCAACAATTCCACCGCCACCAGCCAGGGCCCTGTCCCCAACACGGTTAGCATCCGCTCCAACTTCTCACAGTTTTACCCCCAGTCCTTTGTAACCCCTTTTCAGCAGCCGAAGAACCCATCACGTCCACTCCATCAGACCACACTGTCTCCCAACTTGTCTTCCAAGAATCCCCTGGACGAGATCTTGGACCTGACTGTGAGCTCGCCGTCTCCCTCCCCAGACACCACGGAGGGCGGACTCCATCTGGACAGTCTAGGGGTGCACACAGCATTCGGAGATGACTTTAACCTGGAGTCTCTGATCTCCCAGACTGCACCGAATGCCCAGCAGGCCGCACCAGTACAGCAGCCTATTTtgctacagcagcagcagcagcagcaacatctGCAGGCAACACAGCAGCAGAACCACAGCCTGCTCGCCAATAACCAAGACTTATTAGATTTATTTGACCTGCCCCTTTCTCCCCAGATGCCCACACAGAAAGCCAGCCCTTCGCCCTCTACCTCCTCCTGCTCTTCCTCCACGTCCTCCACCTCAAACAACCTGGCTTCGCACGTCTCCGCCGGCCTCCTGCCCGCATCCACCCTCATCCCGACATcgtcctcctcttccctcttctCCAACccgtcctcgtcctcctccttgTTTTCCAACTCTTCCCCTCACTTCTCCTCCAACTATCTCCTCCCTCAGTCAGACTCGCTGTCCTTGCCCAACGGCCACTCCGGCACCCTAGACGTTCGCGAGGCTCTGAACAGCATGCTACAGCGCGGTCTGGACCGGACGTCTGTCATTAGGTACCGGCAAGAAGACTCGGAGCTTTAACAGCAACAGCTCGTCTGGACTTTGTTTTCCTTCTgggtcattttgttttgttctgtcttTTAAAGCAGATTGTCTTGTTTGCTGCTGTCTATGATCGCACCCACGGACCTACTCCCTCTCCCCTCAGGGCCTATAGTCACATCACTGCCTGTCCTGCACTCGGCTCGCCCTTCTCTTTATCCACCTGTAGCGTTCACCTGCTTGAGGCTGTTTAGGCGATAGCAGGCTCCCATCAGTATCAGATTTCTGCACCAAAGTgtgtcctccacagtgaaaggCAGCTGTGAAAACAACAACCGTgataactgtattttattgaATATACGAGCtgtcaacaaacaacaaaagctcatTCATCGAGGTTCGGAAATCTGTAATAAGCCTCCCCGCTGCTGATTTTACGAGGTATGATTGGTGAAGTTGCTGGAAGCTCTAAATGCCTTTTCACCAGTTAAAACCACATCTTTAGACTTTGCTTTACTGCTACTTCGCTTCATGGCCGTTTTTGTCTTGACTAAAACAAGGCTGTATGCAAGGCTTGGTTTGAGTGAAACAAAAGATAGCGTTGAACTGGAAGatgaggaaagaaaacaaaacaaaaacagattaaaTCTTTTAGCTGATAAGCCATGAAATGCCtcagttttcatttgttttttcttctacaTGCTCCCTCTTGTTTCTCTCCCTGCTTGTATGAACACTAGTGTGAGGGGaaaaagggagaggaagagcagtcCGCTGTTGCAAACAGTGCCTTCTGGAGAAATCTTTAAATGCAGTCTTTAAAAATCCATGTAGCCTAATGTATAGATTTGTACTCTTggttattcattttaatttaaacatggtatatttgtatttaactTTTAGCCCCCTCAGTCAGTCAGTCGTTTGTGTTACACTATGGTGGTGGGTTTCAGGAAGAAGCCTCCGTTAAGCCTGTATGTGCTCGTATGATTGTCTGTGTGGACTTGTCCTTTTTTCTGTGTTCTTCTGTCCCCGTTGATATGACAATGTGCTTTTATTATTGAGCAGCATGGATAGGAATTGTGTCCAAAAATTTGATCtccctattttattttatttttagtttaagCTGACTATAACATTTAGTGATGTGACTCCTGGTTTTGATCTGATTTTGAATTTCTCAGGAACGTCTCGAATGCTTTGCTGTTGGTGTCGTTTTGACCAACaaacatatattaaaaaaaaaaaattgttttcaaGTCTGAGTACAGTGGATGACAAAGAATTTCAAGGTTTTATGGTCTTGAGTCtgaaaagctgtttttttttgtttttttttctttcaacaaaatcctcacttttttttttttttcagacaaaTTTCTGATTAaatgtgtttccatttcagGCGCCAAGGCTGTAAAACCATTTGAAACGTGCAGATTTGTGATGTTCACTGTGTATGATAGTGCATAGTTAAAAACCTGTGAGATCTGGCCATCTTTGTGTGAAAACGATGCACTGTAGTTGGTTCGTGACAAAATGCCGGGGTAAGTTCAAGTGATCAAAAAGCAATAAAACCATAATTCTACATTTGTTGTGAAACAGACATGCCTAAATACTGTTTACGCTCAACGGGCAAAGCTTTGTGGTTACCTTTGCATGGTATGAATCTCCTTATTTCTGTTGTGCTTCATAGTCTTTTAGTCAAACTGATTCTGAAATGCTTACAACCTTTTTTGTATAGTAAGTTTTCACGGGATGAACGCAATGCGTTCTTGGTGTTTTAGTCATCGTTATTATAAAAGTTcttgttatttatatttaagggatatttagattttagatatGTTATCCTGCTTATTAGAATAGTTAACAAAATGTTTGGTCAGGGAAGTTTCTAGTTTTCAAGATTACTATAAAACAAATTCTATTATAACCTGCCACCAAATAAGATTGCACTGTTCTGTACTGCTGTACAGCGTCTGGATTTATTTCTGCTCATTTCAGCTTTTGCTTTTCTCAAGCAGAATTGTTTCTCCAACTCGTAGACCTTTTTTGTCAGGCCTCCAGTTTGCAGAGAGATACCAAAGTATTCCACAGacacccctcccacccccaccccgacccccacccccacccctaaaGTTACTGGCTCGAAGATAGCAGACCTTTTTTTCTCaatctcaggaagaaacctacAGGAGGTGTTAACGGCGGGGCGTTTAGCAGAAATCTACCATTTCCCCTTACAACAGTGGTGAAACTATCCAGTACGTGTGCTATTTTTGTTCTTAACTCTGTGCTGTGACACTTGCTGTATTTATGTTTTAGACTTTATGTAATGGGTTTGTTGTTTGTCCTTGTGAACATGTCAATGATTCTAAAACGTTTATGCCTTCTTAGGGCAAAGAGCAAAAGGCGGTTTCTTTTTaagaaacattatttttctgtggaccgttttttttcattttcattttcatttgtgtTGGACATTTAATTCTTGTTAAAACTGACCGATCTTTAAGTCGATTCGCACCTGGATTATACTGATATGTGCAATTGATCTGTCCAAGCCTTCACCTCTCCCCTCAGTGTAACAGATGTTTAGGTTTAGACTCACAGTATCTCCAGTTCTTGTaaacacttttctttcttttttattagcAGACTATAGCATTCATATAGTCTTTTCTGGTACCCTCGATAATTTTGCTTTAAATATTCCTCGTCAGGCACATTCCGAGACATCAGTCTGCAATAGACTtgcctttgttttttcttttatagccACACAAATAAAGCTTTATGCATTTGAGGGATATGGACCgcatttaaggaaaaaaaaaaagatttgtagTAACAGTATAGTTTTAACGTTTTATTATCATTTTGCACTAAGAATGGCATAATCAAGTTACTGTTCTCTTGTGGGTTATGATTGAGCGTTGCaagctttttcttttctgatCTTTGATGGATAGCTCTGTGTATACTGTAACCATCTTTCCTGTTTCTCCACCGTTTGCATATTACATACATGTTATCACTCTCAAAATAATTTATTgctaacaaaaaaaatgaaacaaaaaacatgctactgattgtatgtatttttaaacaaagcctattttttctgtaaaaaacaaacaaaaaaaactgtgttcAGCACTTTTATTCTGGGTTGTGCTTTtgttttctatatatttataatttagatccaaatgtatatattgtaaaATTTGTGCCTTTCGACtaattcttttaaaaaaaaaaaaaaagttttctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133277 lncRNA upstream 12405 27879317 ~ 27882311 (+) True G98770
TU133272 lncRNA upstream 35593 27855676 ~ 27859123 (+) True G98766
TU133269 lncRNA upstream 45778 27848733 ~ 27848938 (+) True G98763
TU133262 lncRNA upstream 61894 27832239 ~ 27832822 (+) False ncanb
TU133263 lncRNA upstream 234655 27659696 ~ 27660061 (+) False ncanb
TU133530 lncRNA downstream 341139 28312594 ~ 28318888 (+) True G98972
TU133553 lncRNA downstream 478088 28449543 ~ 28460166 (+) False LOC120565132
XR_005640191.1 lncRNA downstream 485538 28456993 ~ 28460210 (+) True LOC120565132
TU133552 lncRNA downstream 485538 28456993 ~ 28460166 (+) False LOC120565132
TU133572 lncRNA downstream 598193 28569648 ~ 28570858 (+) True G99007
XM_039811768.1 mRNA upstream 61861 27659696 ~ 27832855 (+) True ncanb
XM_039811770.1 mRNA upstream 61861 27659696 ~ 27832855 (+) False ncanb
XM_039811769.1 mRNA upstream 61861 27661496 ~ 27832855 (+) False ncanb
XM_039811771.1 mRNA upstream 61861 27711044 ~ 27832855 (+) False ncanb
XM_039810830.1 mRNA upstream 279249 27612852 ~ 27615467 (+) True rfxank
XM_039810560.1 mRNA downstream 1338 27972793 ~ 27997414 (+) False tjp3
XM_039810562.1 mRNA downstream 1543 27972998 ~ 27997414 (+) False tjp3
XM_039810558.1 mRNA downstream 4465 27975920 ~ 27997414 (+) False tjp3
XM_039810557.1 mRNA downstream 4466 27975921 ~ 27997414 (+) False tjp3
XM_039810559.1 mRNA downstream 6214 27977669 ~ 27997414 (+) True tjp3
TU132947 other upstream 1098977 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 1875345 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 2162539 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 2347627 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 3020842 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 56517 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 165814 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 800933 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 1692178 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2456048 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile