RNA id: XR_005640198.1


Basic Information

Item Value
RNA id XR_005640198.1
length 5698
RNA type transcript
GC content 0.54
exon number 29
gene id dot1l
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25991506 ~ 26019371 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCATATTTATTCATGCCGGGCAAGATGGCGGCGATACGGACGGTGTGTTATTGCCAGTGGACATAAACAGGCATTTTATTCAAAATACAAAACCTGGTCCGATACATTTACACACTTAGCCGCATTCTGTGGTTATTTACCGCGCAACAAGCGTCGACTTCCTTTTCATTTTACGCGtttcaacgtttttttcttGCAAAATGTTCACGTTGTAGCTCGCTCGCTAACCGACCAGCTGGCTAACAGAGAGCTAAGTTAGCTATCTACCGCAGCCAAGCCGCCGTGAAGTGGAGAATGGGAGAAAAGCTTGAGCTAAAGCTCAAATCACCGGTTGGAGCAGAACCTGCTGGTTATCCGTGGCCTTTGCCAGTATACGATAAACACCATGATGCTGCTCATGAAATCATCGAGACCATTCGGTGGGTGTGTGAGGAGATCCCAGACCTCAAACTGGCCATGGAAAACTACGTACTCATTGACTATGACACCAAGAGCTTCGAGAGTATGCAGAGACTTTGTGACAAGTACAACAGGGCCATCGACAGCATTCACCAGCTGTGGAAAGGGACGACGCAGCCCATGAAGCTCAACAAGCGTCCTTCAAACGGGCTGCTGAGACACATCCTACAGCAGGTGTACAACCACTCAGTTACCGACCCGGAGAAGCTGAACAACTATGAGCCCTTCTCCCCTGAGGTGTACGGAGAGACCTCTTTCGACCTGGTGGCTCAGATCATCGACGAGATGGAAATGATGGAAGATGACACCTTTGTTGACCTCGGCAGTGgAGTTGGTCAGGTAGTGCTGCAAGTTGCAGCAGCAACCAACTGTAAACACTACTACGGTGTAGAGAAAGCAGACATTCCAGCTACATATGCAGAGACCATGGATAAAGAGTTTAAAAAGTGGATGAAATGGTACGGGAAGAAACATGGGGAGTACACACTGGAGAGAGGTGACTTTCTGTCTGAAGAATGGAAGGAAAGAATCGCCACCACAAGTATTATTTTTGTGAATAACTTTGCCTTTGGTCCAGAGGTAGATCACCAGCTGAAGGAGCGCTTTGCTAACATGAAGGAAgGTGGAAAAATTGTGTCCTCCAAACCTTTTGCACCTTTAAATTTTAGAATAAACAGTCGAAACTTGAGTGATATTGGCACAATAATGCGTGTGGTGGAGCTTTCTCCACTGAGGGGCTCCGTGTCCTGGACGGGAAAGCCAGTGTCCTACTACCTGCACACCATAGACCGCACCATACTTGAAAACTATTTTGCTAGTCTCAAAAATCCTAAACTCAGGGAGGAGCAAGAGGTAGCTAGGCGACGTCAGCAGAAGGACACGAAGGACAGTAAAAGCAATAGCACCACGCCCACTAAACCTAAAGAACAAAACAAGCAGGACTCCTGTGGTGAGGATGAGCGTCCTAGCTTGGTGACAGTGGTCAAGCCCTCTGCTAAACCCCGAAGAGCCCGACTCTTGCCCAAAGCTCGCAAGTTGAACAACAAGAAACGTGGTCGACCCAAGAAAGCTGCCCCGGCTGCcgagaagaaaaacaagaagaATCAGAGCGCATTGGATCTGCTTCATGCCAAGACCCTTTCGGCGGCACCCCCTCAGGATGCATACCGGCAACCTCAGAGTCCCTTCTACCAGCTTCCCCCCAAGGTCCAGCACTATCCCTCTAGTCAGCTGCTTCTGAGCCCGACTCCTCCTGGTCTGCAACAACTGCTAGATAACATCAAAGTTCAATACCTCCAGTTTATGACCCACATGAAGACTCCTCAGTACCGCTCCAACCTGCAGCAGCTTTTAGAACAGGAGAAGCAAAAACACAGGGACCTGTCAGGGCAGGCGGAGCAGCTCCACTCTGTTTGTCAGTCTCACAAGGATAAGATTAAAGGTCTCTTTCAGACCAAACTAGATGAGCTGGGAGTGAAAGCATTGACTGTGGAGGACCTGCTGCAGGCCCAGACGGAGATATCAGCCCACAATCATCAGCTGAAAGAGCAGACTAAGCAGCTTGAGAGAGACATGGCCTTGCTGAGAGACCACAGCCTGCTACTGCTGAAGTCTCGATGTGAGGAGCTAAAGCTAGATTGGGGCTCTTTGTGTCTGGAGAGTTTGTTGAAGGAGAAGCAGGCACTACGCAGACAGATCTctgagaaacagagacactGCTTGGAGCTGCAGATCAGCATTGTGGAGCTGGAGAAAAGTCAAAGGCAGCAGGAGCTGCTTCACCTTAAATCCTACAGCCCCTGTGATGGCTCCCCATACAGAAAGAGCCTAGAATCTCGCTCTTCCACAGACCTGGACTCCTCTAAGCTTGGCCTGTCCTCGGCCCCAGCCCTCAACGGCATCAGCCCAGACCTGTCTATCAATGGCACAAGCTCACCCTGTTTTGACCGGGCCAACACCAAGGGGGAGCTTCTTTCTCGCTACCTGCCCATCTCTCCAGACCATGAGATTTTACCCACCATCCCTGATGTCCGGCAAAGGCAGCAAAGTTCGTCCTACGCTCTTCCTGATTACACACGCTTCTCCCCCGCAAAGATTGCCTTGCGGAGACACCTTAACCAGGACCCCACGGCCTCTGCTCACTTGAGAGGTCCAGGGCTGACCGCACACAGggaatTTGGTGGTGTGAACTCTCCGCTTGGAGCCAAAATGAACTGCCCCTCTCCCAATGCAGCTGATGCCCAGAATAAAGGTTTTGAGAGGGGTGGTAAGGAGAGGAGCCCATCTGTTCAGGGTGACAACAGCATTACGAGCCTTCCAATAAGTATCCCTCTAAGCACTGTCCACCCAAGTAAACTACCAGTCAGCATCCCCCTGGCGAGCGTGGTGCTGCCCAGTCGTGCTGAGAGACTGAGAAGTACTCCGAGTCCTGTGTTTCAGGCAGGTCAGACCAATGgaTATTCATCCAGCACAGGGCTGATGAATGGAGGTCCCCATCCTGAGGACCATAATGGGGCTTCTTCATCACCTCCCCCACACCCCAACACTACTTTGGCAGGACCATTGGGCAGAGGAGGTCCCATTCAGAGCCCCCCCCTCAGCACTGGAGGAGTGCTCCAGTATGCAGATGGCCCCCCGAGGATTCTTCCAGAAGACGGACAGGATCGTCAAGGAGGTGACTCTGACACGGAGCCCCAGGACAGTGAACTGCGGAGGAGAATCTTCTTCTCGTcttgctcctcttcctcctcgtcTTCCTCTTCGTCAGGCAGTGGAGGCAGCGCGGCCGGAGGATCACGCCTCCACCATCACACTGGCAACAAGCAGGGATACCACAGTAACCATGgaaaccaccaccaccagtccCCCGGCACACAGCACACTCCCACGCCCACACACATGTCGTCATCACACGCCTCTCACGGCCTCGTCTCTCAAGAGGGACGTAAGCGGGGGAGAAGGAAACGCAGCTCTACAGTGGCTGTCACAGCCAGCGGATCCCCGAAGAGGAGGTCGTTCCCCGGGCTCTGCTCCAACAACCACTCCTCAGGATCGCCACTCAACATCAACACCATGGTGAACAACAtcaaccagcctctggagatcTCCGCCATCTCCTCCCCAGAACAGTCGAGCCGTAGCCCCACTGGGCCGGACCTGGACCAGCCTCCCATCTTGAAGAGAGAGCGCCCCCTGGAGCTCAATGGCACAGGCCGTTACTCCTCTGCCCCCAGCTCTGATGACGAGGACTCGGGATACCCTGCGGACAGCTCCAGTTCACGAATTGAAAGAAAAATTGCCACTATATCCCTGGAGAGCAGAGATGGACCTGGTAGACTAGGGGATGGTGAAAGagTCAGGAAGTCTGGCGGGAGCAGTGGTAACAGCACAGGCAGCGaggcctcctcttcatcctccttgTCCTCTACCAGCAAGTGGAAATCCACCTTTTCACCCATTTCTGACCCCAAACAACCCAACTCTGACCTGAGACAGGGGGGCTCTCCATTTGGCATGGGGGGGTCGAGCCGGGGCACAGACTCAGATTCTGACCACAAACAACAGCATCAGCAGGTGAGGAAAGGAAGTGATGGAGAGTCGTCCAGCTACGCCAACCCCAACCCCTTCCTCAGTCAGGAGGCAGGGCCGCGGGGTGGCGGCAGCGCCGGCGCCCAGGGAGGCAGCGGTTCCGACCAACGCCAGGCCCTCCAGAAACAGAAGGCCCCTCGCGACTGGGAACTGAAGACGAGCAGCAGCATGGCCAGTCAGAACCTCTTCATATCTGCTGCTGCCAGCAGTGGTGGGGGCATTTTGAGCGGGAAGGTGGGGGGCAGTCCTGTAGCAGTTTCCTCAACCACAGGATCCCCTGTGGGGCAGTACCTGGGGTCTCAGTTCCCACTCGGAGGGACGTCCGTTCTACAGTCCTTGTTCGGGGCCCAGACGGGCGGATCCACGGTGAGTGGGACTCCAAGGCTCGTCAACGGACACCCTGCCCTGGGAAGCTTCTCCAGCGCTGGGCTGGCGGGGGGAGTGGCTGGAGGTATATTTCACCACGTGGTTCCCACAGTGTCTTCCCATCAGTTTGGGGTGACGCTGCCCACCTCTGGAGGCCTCAGCTCTCTGCTCAGTCTCTCGTCCTCATCCTCTACCTCGTCCCAAACCCAGCAGCACACCACTCCCCAGCCAGCCTCCATGCGCCTGGCCTCCGTGTCCTcgcctctccccctctcccagGCTCAGCACAGCCGCACTCAGTCAGTCCTGCATAGCCCCTCTCCTCCCACGCTCACcctgccccctcctccccccctgcacagcacctcctcctcagcacccaCGCACTCGGACGCCCCGTCATCATCTCGATCCGACTCCCTCCACTCCTCCCGTCTGTCCCACTCCTCTCTCCATCACCAGAGAGCACagtcatccctctctctctccatctccgcCTCCTCTGCttctgtctctgctgctgccaCCGCTGTCgcttccctctcctcttcctctctgttgaCATCCTCCTCGTCTCGTCCATTCGCAGTGCACTACTCCCCTCGGCTGCCCCCTCCACCACAGGCCAGCAGCTCAGGTGGTGGCGGGAGCATGTGGAGGACTCAGGGCATGCATGGTAACTACACAACCTCCCAGCTCCCTGGCTCCCGACCTAGATAGGGTTtgggggggaagggggagggggaggacagagaggggaagGGCGAAGGGCAATCAGAAGgtggaaagagggagagaatgagagagagagagagagagagagagagactggtagggagtgagagagacaggatACCTGTTTTTCATGTGCTCCCAAAACAGTGATGTTCTGATTAAACAAGGTAATTGTTGAAAACTAcctcaaaattaaataaactatGCAAATGTCCAGGTGTGGACCAAGGCACTCTCCTCACTCACTGGTGCTTGAAATTGTCTGCACTACCCACCCGCCTCCAAGACCGGCTTCTGTACTGGGAtctctgagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaaccaccACTATGGTCACCTTGAGCAGAATTCATAGGGTACCGGTCATGTTTATGTGTTGGTTTGAAGATTTTGCAATATGGAAATCAGTACTGGCTGCTGCTCAGCACTCAAATGAACTGAATTATAAAGATGTCTGGTTTAAATTAAAGGTGCTCAATAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132643 lncRNA upstream 66456 25884516 ~ 25925050 (+) True G98312
XR_005640280.1 lncRNA upstream 153759 25786331 ~ 25837747 (+) True LOC120565749
TU132636 lncRNA upstream 154126 25786325 ~ 25837380 (+) False LOC120565749
TU132603 lncRNA upstream 250957 25739131 ~ 25740549 (+) True G98280
TU132489 lncRNA upstream 383115 25558113 ~ 25608391 (+) False G98196
TU132705 lncRNA downstream 15390 26034761 ~ 26039847 (+) False oaz1a
TU132719 lncRNA downstream 115866 26135237 ~ 26136630 (+) True G98363
TU132720 lncRNA downstream 115906 26135277 ~ 26136630 (+) False G98363
TU132754 lncRNA downstream 172497 26191868 ~ 26194089 (+) True G98384
TU132804 lncRNA downstream 272729 26292100 ~ 26292440 (+) False zbtb7a
XM_039811384.1 mRNA upstream 7628 25951730 ~ 25983878 (+) True ell
XM_039812115.1 mRNA upstream 40467 25938748 ~ 25951039 (+) True fkbp8
XM_039811584.1 mRNA upstream 53674 25840802 ~ 25937832 (+) True ssbp4
XM_039811583.1 mRNA upstream 53674 25840802 ~ 25937832 (+) False ssbp4
XM_039811585.1 mRNA upstream 53674 25908239 ~ 25937832 (+) False ssbp4
XM_039810879.1 mRNA downstream 7904 26027275 ~ 26031063 (+) True amh
XM_039810881.1 mRNA downstream 15380 26034751 ~ 26039866 (+) True oaz1a
XM_039810190.1 mRNA downstream 31540 26050911 ~ 26053621 (+) True org
XM_039812390.1 mRNA downstream 78414 26097785 ~ 26135163 (+) True lingo3a
XM_039812389.1 mRNA downstream 79010 26098381 ~ 26135163 (+) False lingo3a
TU132604 other upstream 259329 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 444417 25532825 ~ 25547089 (+) True G98194
TU132285 other upstream 1117632 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 1117632 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 1207625 24781918 ~ 24783881 (+) True G98012
TU132947 other downstream 773316 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2008601 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 2117898 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 2753017 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 3644262 29663633 ~ 29665090 (+) True G99297

Expression Profile