RNA id: XM_039810735.1


Basic Information

Item Value
RNA id XM_039810735.1
length 4779
RNA type mRNA
GC content 0.52
exon number 20
gene id palld
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39075297 ~ 39130840 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCGCAGCAGCTAATCAGAGTTCAGAAGAAGACTACTTCAATGTCTCTGACGATACGCTCGTCGTCACCCAAAACCCCCGAGGTCCATCCTCATCGCTCCACCCTGGTCCAGTCCCTGTCTCAGCCCCCACAGCGGATGCAGAGCCCAGTGTCATCACTGTATGTTGGTGAGGTGTCAGGTCCTCCTATGTTCACCAAGCTGCTGCAGGATGCCCAGGCATCCGAGGGCCAGGTGGTGGTTCTGGAGTGCAGGGTCCGTGGAAGCCCTCCTCTGCACGTCAGATGGTCCCGCCAGGGAGAGGAGATCCTGGATTCGCCCGATTTTCGTATTCTCCAGAAAAAGCCTCGATCTGCAGCTGAGCCAGAGGAGATCTGCACCCTGGTGATAGCTGAGGCCTTTCCAGAGGACGGCGGTCTGTTCTGCTGCACTGCATCCAACCCGTATGGCTCTGTTAACAGCACAGCCCAACTCACCGTCACTGCAGCAGCCGAGGACTCATCCAGTAATGGCATGTCTGGTGATAACTCAAGGTTTGAGGATGTGGCagccttccctcctcctcccccacccACAGAGATCAGCCTCCTAGAGCTGCCACCCAAGATGCTGCCTCAGCCCGGCGCGTTCCTTATCAAGGAGCTCGAGATCTGGCCCGGTGTGTCATCACTGACTCCAGTACAGATGGGCTTAGAGGAGGACGGGAATAAGGGAAAAGGGTCTGTACAGAATGGTCAACCCCCAAATCCATCATCACCACCAAGCCagcctccacctccacctccacctctgccACAGTCTGACCCTACGACACATGTCCCAGTCACAGCCCAAAGTCCTGCCCAGGTGGCACCAGACTCCCCTCCATCCCCAGGCGAGCTGTCTCCATCCCCTGGGAAGGACGGTCCTCTGCTGCCTACCAAGCCTAAACCAAAGCTAACTGAGAATATAGAGGAGGAGACAGGAAATTACAGGAACGCGTCCCAGCTGAAgcagctgcaggaccagatTCTACTGGAGCAACAGGAAGCAGCcagctggcagcagcagcaggaacaGCCGAGCCAGGAAATCCTGCCTCCACCCCAGCAACAAGAAGCACCTCCACCTGCTCCACCATCCCCACCTctcccacctcctccctccttccagGAGTTGGAGAGCAGCACCGCCATGCAGGCCAGCACCTTCAACTACGCCCGGCCCAAGCAGTTCATCGCAGCCCAGAGCCCCGGCGGGGCGGGCTACGTCACCCAGTCCTCTGGCTCCTCGGGGTCCAACCTGTCCTCCCCCCTGTCTCCTCCCACCTCACACAAGCCCTTCACCCGGGTCACCGTGCCCCCCTTCACCAAGGCCGGCAGCGTGGAGTCTCCCAGCTCTCCCTCCTTCCCGCCTCCACCGCCGCCCTTCTTTAGCTCCAGCAACCTGTCCTCTCCATCAGGCCCTGGCCAAGacttccctcctcctccgcctcccCCCCCTCCGCCCGTCTCCATGTCTCCGGCCCTCTCAGATATGTCCTCGCCGTTTTCTTCCGTCCCTCCGTCTCCAGCCTCCAGCTTCCTGTCCTCAGTGTTGCCCTCCACGCCTTCCTCCCCCAGCAGTCCTATAGTCAACGCCAACGCCCTGGGCCTTCCTAAAGGCAACGGCACTGTCAAAGCGTTCCCCAGGAAGTCCTCGGTCACCAGGACGCCCCGCCTGGCCTCTGACTCTGACATCCAAGGATCCAAGGACGCCGTCATCCAGGACTTGGAGAGAAAACTGCGCTTTAAAGAGGAACGCATAAGCAATGgtcaacagAAGTTAACCTATGAGGAGAAGATGGCTCGCAGACTGCTGGGTGCTGACAACGCTGCCACAGTCttaaacacacaggacacagaggAGGAGCCAGTCACACAGGAAGACGAGTCATCTGATAGAGGATATTTCCCTCAAAAGGAATACAAAGTGTCCAGCTTCGAGCAGCGTCTGATCAGTGAGATTGAATTCCGTCTAGAGCGTTCACCGGTGGAGGAATCGGACGACGACGTGCAGCACGATGAAGACTCAGCCGGGCGGGGGAAGGCACCATCCTTCGACCAGAAGCTCAAACACTACAAAGTCTTCGAGGGCATGCCCGTCACCTTCTCCTGCAAGGTCCACGGAGACCCCAAACCAAAGGTCTACTGGTTTAAAGATGGCAAGCAAATCTCCAAGAGGAGCGAGCACTACAGGATCAGCCGCGACGCTGATGGAACCTGCTCCCTGCACACCGCTGCAGCCTCGCTCGATGACGACGGCAACTACACCATCATGGCGGGCAACCCCGAGGGCAGGGTGAGCTGCACCGGCAGGATGATGGTGCAGGCCGTGAACCAGCGAGGCCGAAGCCAACGCTCCACACCTGGACACATGCGCAGgcccAGGTCCAGGTCTAGAGACAGCGGGGATGAGAACGATAACATCCAAGAGCGCCACTTCCGCCCCCACTTCCTGCAGGCGCCCGGTGACCTCATAGTTCAGGAGGGCCGACTCTGCCGGATGGACTGCAAGGTGAGCGGCCTGCCCACTCCTGACCTCATCTGGCAGCTGAACGGGCAGACCATCCGGCCCGACTCTGCCCATAAGATGCTGGTGAGGGAAAACGGTGTGCACTCATTGGTCATCGAGCCCGTGACTAGCCGCGACGCAGGCATCTACACCTGCATCGCCAGCAACCGAGCCGGGCAGAACTCCTTTAACCTGGAACTCATTGTTGCAGCCAAAGAGATGCACAAGGCCCCTTCATTCGTTGAGAAGCTGCAGAACACAAGTGTGGCTGAGGGTCATCCTGTGCGACTGGAGTGCCGTGTCGCAGGGGTCCCTTACCCCCAAATCTTCTGGAAAAGGGAGAATGAGTCATTAACTCACAACACAGATAGAATCAGcatgcaccagGACAACTGTGGCTACCTGTGTATGATCATCCAGCCAGCCATGAAAGAAGATGCTGGCTGGTACACCGTGTCAGCCAAGAATGACGCCGGCATCGTATCCAGCACCGCACGCCTCGATGTCCACACTCAGTGGCAGCAGCCTAACCTCCCCAGGCCCAAGAAGGTGCGTCCCTCCACCAGCCGCTACGCCGCTCTGACAGAGAGAGGGCTGGACGTGAAGGCAGCATTCTTCCCTGACTCCAGCCCGCTGCAGCCTGGCGGCCTGGTGGAAAGTGATGACCTGTAgagagaccccccccccccttcccgaAAAAAAGCTGAAAGCTGCCCTTGTTCTCAGCACGCCTGAAACAAATACTTTATGATGGCGACAAGGGAGAGTGTAGAGCCTTGTCCACCGGAGGGACTGCGGATACAGAACTGAAGGGTTGGTGGGCAGAGTGAGCTGGTGTAGCCGTggttttcatacatttttataatgtgaCACAACCCATTATATTACAGAATTCATCCAGTTGTTCCCCCATGCTTCATTTTATCAAATGGACCTGGAAAATGattgaagtgtttaccacgagGAAAGACTGTTCATTAATATGCTCTCACTGTTTCATGAATTGTTCATGTTGACTCTGTCTTGCAAAGGGTTGTCTGTTTAAGTGCCTCACATGActgtaaagataaaaaaaaaaaatgatacaaaatGAATGAAACATAGAATTACTATGCATGTTCCAAGTGGTGCCATTTGATATAACACAggctaatactgtatctatacGTAGCACTCCACCAGCTGGGTTTAAATATGGACATGAGGGAGAAAAGATGACTTCAAAAGCGGGTGAAGGATTCCAAGCATTGTAGCTTTGACGAATGAGATCACTTTTATTCTGTGGGCTTGTGTAGCACAGTACTGATATCCACAGTATCTGATTGTAGCTGCAATATCATACAGTCTCTTTGTTGTCATAGATTAGCTTACAGATATTGGAAAAGGCCGGGCCTTGCAAacagaatagtttttttttagcaaaataaATGAGGTTTGGGAAAAGAACGCTCACACATGAACGTGATCTGTTTGGTTGTGGATGCAGCACAACTTAAAGAAGGTTGGATCTGACAGACACAGGAAGGGATAGCAACGGAAAAAGCAGGTTTTTGTGACTACAATGGGCACCACTTTAATGTGGTAAGTTAACACTTGATAGAGGGATGCGACTCTGGCGATATTCAAAATATGGAAGATACAGAAAACTTTGGCGATAGAGGgtcatttttgtgaattttctTTGATGGTTTATTTTAAAAGGGTGAATTGAAATGTTCTTACTCAAGAGAGGGTGCTGTGAAAGGTTTCTGTGTATTTGTCACACATCACAGAttgtccattttatttttgtatggaAAAAAAACTTCCAACAGTCTTGACATAAATTATATCAGCAACCTTTTGCTCACTGATAAAACAATCCTTTCTGTATCATGAagttttataaatatatttactgCCTTAAATCACGTTTAGGCTTAATGCAAACACAATTTCTTTGCATGTTATTCTTGGACACTTGTACAGTGCCAAACGACTGTTTCCAGGATGTATAAAAACACAACTTTTTCCAGGGGTAGAAAAGCACTCTAAGCTGGTAGAAAGTGAAAAGCaagttatatttatatttactatTTTCATCACCTATACTACACAAAGTGGACatcttttttctgtctgttcAGAGCTTGCATCAGCTGACAGTTACTGTGTTTGCACATTTCTATGCCAATCAATGCCTGTATATGGATTGTTCTCCCGATATTATTTTAGGTTAtgaaagttaataaaaaaatctaactcTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136521 lncRNA upstream 74863 39018380 ~ 39023580 (+) True G101364
TU136523 lncRNA upstream 80770 39016711 ~ 39017673 (+) True G101365
XR_005640312.1 lncRNA upstream 155231 38936151 ~ 38943212 (+) True LOC120565971
TU136418 lncRNA upstream 226265 38871935 ~ 38872178 (+) True G101289
XR_005640276.1 lncRNA upstream 240361 38855904 ~ 38858082 (+) True LOC120565661
TU136609 lncRNA downstream 47404 39178244 ~ 39178746 (+) True G101427
TU136619 lncRNA downstream 59226 39190066 ~ 39190781 (+) True G101437
TU136663 lncRNA downstream 147812 39278652 ~ 39278953 (+) True G101464
TU136677 lncRNA downstream 225643 39356483 ~ 39361708 (+) False prdm5
TU136689 lncRNA downstream 306814 39437654 ~ 39438065 (+) True G101484
XM_039810206.1 mRNA upstream 83663 38951570 ~ 39014780 (+) True fryl
XM_039810205.1 mRNA upstream 177432 38907586 ~ 38921011 (+) True LOC120564938
XM_039812003.1 mRNA upstream 191076 38901833 ~ 38907367 (+) True sgcb
XM_039811582.1 mRNA upstream 217866 38866435 ~ 38880577 (+) True usp46
XM_039810140.1 mRNA upstream 255772 38719919 ~ 38842671 (+) True scfd2
XM_039810865.1 mRNA downstream 72008 39202848 ~ 39211764 (+) True fbxl5
XM_039812120.1 mRNA downstream 164496 39295336 ~ 39306238 (+) True ndnf
XM_039812444.1 mRNA downstream 192744 39323584 ~ 39356737 (+) False prdm5
XM_039812443.1 mRNA downstream 192748 39323588 ~ 39361733 (+) True prdm5
XM_039811658.1 mRNA downstream 323280 39454120 ~ 39464444 (+) True LOC120565708
TU136417 other upstream 217838 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 1608371 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 1966138 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 2399574 36695437 ~ 36698869 (+) True G100671
TU135470 other upstream 2563904 36532726 ~ 36534539 (+) False smim24
TU136690 other downstream 329606 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 430282 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 1384253 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 2094251 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 2094794 41225634 ~ 41225705 (+) True trnap-ugg_3

Expression Profile