RNA id: XM_039810748.1


Basic Information

Item Value
RNA id XM_039810748.1
length 5794
RNA type mRNA
GC content 0.47
exon number 33
gene id mcf2l2
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31783226 ~ 32159445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGAGCAGCAGAACAGAGCATCATTTTGCTGTGAGGATTATTATGTTTTTGACCAGGAGGCTTCTTCTTACTTTTTGGATATGTAAACCAACTGAAAAGGACTGAATAATTGCGtagttgttgttattttgttaaataattagCTTTGTTTTAACGTAATTACTGAGTGGCTGTTTTGTTGACCTACAAATTTACAGACACACTGGCTCTTTTCTTtaatgaccttctaactgcCTAGTTTGCTGGCTGAGAAACAGTTTTGTTCACTGACTGACTAACTGGCTATGGTGTTTATTGTCAGGTTGACTGGCTGACAAacaaatttgttattttattaactAAACACTGGCTGACTGCTTATGTTATTTACTGACTGGCTGATTGAGCTACTTTCTGTTTTATTCCCTGACTAGCTGTCTTGGTCATATGCAGGCTTACTATTTTGCTGACTGGCTGGGAGTGGCATCATCATTTCCGCCCCCCAGCCAGGCTTTGTGATTGTTTGAATttggaggaggtgtgatgaagAAGAGAGGCTCCacataaaaaaactcaaagaagAAAGAACTAGAAACtagaagcagcagagagaaaagaggaggaaagaaatTTACAACAGAAAATTGGATTAGGGAGCAAAAGGAGGGGAGATTGGGGAAGGAAGGGTGCAGAGAAGAGGCGTGGCAgcggagagagaaaaagattgagcggggagagagagagaagaacagGAGAGTGGATGCGACCCACACCCTGAGATGCTGTGCTGGCTGAGAGAAGACGAGATGTCAGTCCAGGAGCTGCTACAGAGGGTGCAGTGTGTCATCACTCATGTCGATGAGATTATGCAGCAGGAGATCAGGCCCCTGCTATCTGTGGACATCATAGAGCAGCTTCATCGCCAGTTTGCCTTGCTCTCAGGAGGGCGAGGCAAAGATGGCGCCCCTATCATCATCTTCCCAGAGTACTCAGGCTTTAGCGACGTGCCAGAGGAAGACTTCCTCAATGTTGTTACTTACTTGACCAGCATACCCAGCCTGGATGCTGCCAGTATTGGCTTCATTATCATTATTGACCGGCGGAAGGACAAATGGAGCTCAGTGAAGGCCTCTCTATCCAGGATCGCTGGAGCGTTTCCAGGAAACCTGCAGCTGGTGTTGGTGCTGAGGCCGTCCAGGTTCTTCCAGAGGGCTATAGCAGACATTGGGATCAAGCTGCATAAGGATGACTTTAAAATGAAGGTACCGATTGTGATGCTGAACTCTCTGTCAGACCTGCATGGCTATGTAGATAAAAGCCAGTTAACCCGGGAGCTAGGAGGAAGCCTGGAGTACTGTCACAGTCAGTGGATACACCACCGAACTGCTGTAGAGAACTTTGCCATGACAGTGAAAACCACAGCacagatgttacagaagtttgGGACAGACCTGGCAGAGACAGAGCTGCCTAATGATGTCCAGTGCACCAAAGACCTGCTCATAgcacacactgacaaacacaacaacctcaagGATGAACTGAAGCTAGCTTTGAAGCAGGGCACCACCTTGTTAGATTGTATCAAGGAGCAGGCAGCCAAGTCAGAGAACCACAAACTGAACCCAGATGAGATGGAGAACCAAACAACTGTGGAAAGGCTCCTAGCCCAGCTGGATGAGACAGAGAACGCCTTCGAACAGTTCTGGTGTAAACACCATCTGAAACTGGAGCAGTGTCTGCAGCTACGCCACTTTGAACAGGACTTCAGAGAGATGAAAGTGTCTCTAGACAGTTTGATGGACAGTCTAACCAGCCTACCAGATACCGGGGATTGTGTGGCCAGAGATGAACACCTGCTAAAGGACCTGAAAAAACTAGAGGAGAAGGCTCTGCCCACACTAGAAAAGGCCCAGCTCCATGCACTGCACGGTGACCAGCTGATCCAGAGTAACCACTACGCTGTGGACTCTATTCGACCCAAATGTGTGGAGCTCCGGCGGGTCTGTGATGACTTCAGCAACGAATCAAAAAAAAAGACGGATGTCTTGTCCAAATCACTGCAGATACACATGGGCATTGATAAGGTAACCCAGTGGTGTGAGTCTGGCATCTACATGCTGGCCTTCCAGGCTGTGGATAAGTGTCAGTCACAGGAAGGGGCAGAGTCAGCACTTATTGACATCGAACACTTTCTGGAGTCTGCAGAAAAGAACCAACTGACTGAATTGAAGAACCTCCACAACCTGTATGATGTTGTCCTGTCCGAGGATATCAAGGCCAATGTTCTGAAGGCACTGAAGCGCCTGGAGGACGTCCAGGAGATGTTTCAGAAGCGACACGTCAGTCTGAAGAGGCTGTCAGCTAAACAGATGAGGCCCGTCCAGCCCGTTGCCCCGCGGCCTGAGTCCTCTCCCAAACGGCCTGTACTGAAGAACCCACCGAGGACGACTGGGAGCCAGCAGCCTCTGGCTCGCAGAGCTTCTGATAATTCTAACAGTGGCAAGCAGCCAGCAGAAGCTGATCCCAGCAAGAAGAAGAACATACGCAAGGCCAAAGGAGGCATCAAGaTTGAGGTGATGCATGAGAAAAGCCAAGGAGGCTCCACCCATGTTGTTGTGACCAATGAGACAGAGGAGAGTCTGTCCAACAGACGCAGaCACATCATGACTGAGCTAATTGAAACAGAGAGGCTATATGTGGAGGAACTACAAAGCATCATGGAGGGTTATTTTGCAGAGCTGGATAACTCAGAGCTCAGCCACCTCATCCCCCCTTCTGTTGGGAACAGAAGGGATGTACTATTTGGCAACCTGCCAGAGATATATGAATTTCACAACAGGACATTTCTGAGAGAGCTGGAAAACTGTGCAGAGAAACCAGAGCTGGTGGGAACCTGTTTTCTGAAAAGGAAAGAAGAGCTTAAGGTGTATGAGAAGTACTGTCAGAATAAACCCCGCTCTGAAGTTCTCTGGAGACAGTGTGGAGACAGCCTCTTTtttcagGAATGCCAGAAGAAATTGGACCACAAACTGTCTCTGGATGCCTATCTGCTAAAGCCTGTCCAGAGGATCACCAAATACCAACTCATGCTCAAGGAGATGTTAAAATGCAGTAAGGGGGATGGGACAGCTGAGTTGGAGGAGGCTTTAACCACCATGCTGGACATCATCAAGTCTGTCAACGACTCCATGCACCAGATAGCCATTACAGGCTTTGAGGGAAACTTGAGTGAACTCGGGAAGCTGTTGATGCAGGGATCCTTTAATGTGTGGACTGACCACAAGAAAGGCCACAGCAAGGTGAAGGACTTGGCCAGGTTTAAGCCCATGCAGAGACACCTGTTCCTGTATGACAAGATGATGCTGTTTTGTAAGAAACGAGAGGAGATCACAGATGGACACGAGAAGACCCCCTCCTACAGCTTCAAACACTCTCTCAAGATGAGTGCTGTGGGGATCACAGAGAACGTCAAAGGGGACATCAAAAAGTTTGAGGTGTGGTACAATGGCAGAGAGGAGGTTTACATCATCCAGGCTCCTTCCATGGATGTGAAAAATATGTGGGTGTCTGAGATTCGTAAAGTTCTTACAGGCCAGCTAGAGGCAtgcagagAAGCCAGCCAGCTCAACATCTATGGGGTTCCCATGAGGAATGTGCGTAAGATGGCGCTGAGACAATCCGATTCATCGAGTCCAGAGTTATGCTTCAGGAGAACCAACCCTAGCCCTAATATGAGGCAGAAGAAAGAGCCTGCTGTTAAGGAGGCAGTGGTCCCCCGCCGCTTCTCTCtcgcctcctcttcctccttcgcCACGCGACACACAAAAGGTACCCTGTCTGCTAGTGTAAAGAGCAAGAGACATGAGATAAAGAGTGATCCCACTCCATTTGGTTATGAAGATACTTTGCATGGTGCTTTGGCTGCAGTCAGGAAACGTCAGAGCATGACTAGCAGCACTGCAACTGCTGCTGGTGGCACCTCAGCTGTCCCTAGATCCACCTCCCAACCAGGCTGGGCCCAGCAGCGACTCCCTTCCATGGACACAGACGACTTTGAGCCGATCCCCTCCAGTGCGGAGGAATCCTccaactcttcagaagaggaagGCAACAATAAAAATGATGACAGTGGTCGTTTCCGGGTGCAGCTTACCTATGAGTCCTGTGAAGCGCGAGACCTCTCTGAGACGGGTGACTTGGTCCAGTTTCTGAAGGAAGCACAGAGCGGACAATGATATCTTCAGCGATCTGTGTACAGCAACGCTCTCTAAATCGGGCGGAAATGAAAGAAGTACGTGAGGAGATGTGTCTCAGGACAGTTCATTTCTTTGGACTACACCATGTTTCTTGGATCATGACCATGGTTTCTCAGCTGTAATTTCCTAAACTGGACTTTAAATATTAACAGCTATTAGTTTTCTACTTGTAGGTCTTCATTTTGGACTACATATATGGCCTGCTGTTGTTATTTGGCTGTAGTTTTTAATGTTTGACACATTGAAGCTTCTTCAGTGAAGCCTCTGGAAAAAGATGAAATATCAACATGCCTGAATGGAACAGTGGGAGAGCCATAAAGGACGTtttatttaaaggacaatttCGGCGCAAAATGAAtgtaggggttaataacatatgtgtaccgagtcgaacgttctctgggacatgtttttgtGCGAAGCAAATCCGTCTCCAGCTTTAAACAACATACCGCAAAACCGGTGTTTacctgctaacgctagctttcgagGCACTtggtaaatcactattttatataccactaacaaggctcaaaatagcaccacacttaaacGGTAgaataatgagggtccctacatgcaaaccgaagcattgagaactttttaAGTGTACAAAGttttacagtttattaaaaagatagattataaagacagtagcgttcctGTTTACATTTGGGCACCATCTTGGAAATGTCATGAGCAGTCGAACCACGaatgccgtgcaaccagtaacgaGTAAtatagctcaaacacagcgttcGTGCCTTGTTTTGCTGCTACAGTGCGCTGAAGAAAAACTCTTGCAGACAAGGTTCTGCCTCTGCTGCCTGCTTCAGCCACCTGAACCTTTCAGGTTCAAACTACCGACACTTTCCAGAAGAACTTACTTGCCTTTCTTCACCCAGGTAGTGGAGAGCACCCACATAATATCATTACACCACATCAGATCCCAATGTGTTGGTTCTCACACCCTGTAGACTTGCAAATCACCTGTATAAATTGTGAGGTTCAGTAAGTCCCCTGGCAGTCTAAACCTAAATCAGCAGACCTAAAAAGGGCTagtccaaggcaaacctgagccagcccTAAATATAAGCTTACAATACAGAGTTACAATACAGTacttacaatagtccagcctcaaagtaacaaatgcatggactagtttttctgCATCTTTTTAAGACAGGATGTGCCTACATTTTTGCAGTGttacccaggtgaaaaaaggcaGTTATTAttatcaggagagacttcgttgcagatatgcaaaggtttattGTACATATGCATAATGAAATGTCCAGAGTCTTTGGAGACTCCATCGTTGTGAAATaatttttaaaggggtagagaaacaGGACATATCCcctgatggagtctagacactattggtggtggtgaaggagcCCAAAACCAGAGCGAAGGAGTCGACGGAGCGTTCCGCGGGTCACGATGACTGGAGgttgaaggggaggaggagggttgcacgctTAGCCTGAAATGACATCTGACGCAGCAGGGAgagaaacagatttaaagcagggattATTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134625 lncRNA upstream 18574 31761999 ~ 31764652 (+) False LOC120565823
TU134605 lncRNA upstream 67213 31715726 ~ 31716013 (+) True G99837
TU134604 lncRNA upstream 67727 31715160 ~ 31715499 (+) True G99836
TU134592 lncRNA upstream 83690 31656039 ~ 31699536 (+) True G99824
TU134590 lncRNA upstream 117592 31654270 ~ 31665634 (+) True G99822
TU134683 lncRNA downstream 28963 32188408 ~ 32188807 (+) True G99907
TU134768 lncRNA downstream 277402 32436847 ~ 32507210 (+) False nlgn1
TU134775 lncRNA downstream 433494 32592939 ~ 32593185 (+) True G99994
TU134794 lncRNA downstream 722235 32881680 ~ 32886149 (+) True G100013
TU134811 lncRNA downstream 919492 33078937 ~ 33079841 (+) True G100028
XM_039811868.1 mRNA upstream 15687 31761992 ~ 31767539 (+) True LOC120565823
XM_039810199.1 mRNA upstream 139902 31633445 ~ 31643324 (+) False LOC120564930
XM_039810883.1 mRNA upstream 269310 31403773 ~ 31513916 (+) True uhmk1
XM_039812363.1 mRNA upstream 480399 31095881 ~ 31302827 (+) True slc1a7b
XM_039812372.1 mRNA upstream 837601 30934692 ~ 30945625 (+) False akr1a1b
XM_039811660.1 mRNA downstream 61588 32221033 ~ 32410226 (+) False ect2
XM_039811664.1 mRNA downstream 61589 32221034 ~ 32411447 (+) True ect2
XM_039811662.1 mRNA downstream 61589 32221034 ~ 32410226 (+) False ect2
XM_039811663.1 mRNA downstream 61591 32221036 ~ 32410226 (+) False ect2
XM_039811665.1 mRNA downstream 61592 32221037 ~ 32411447 (+) False ect2
TU134550 other upstream 139780 31633565 ~ 31643446 (+) False LOC120564930
TU134559 other upstream 151725 31629816 ~ 31631501 (+) True G99803
TU134544 other upstream 157430 31622698 ~ 31625796 (+) True G99791
TU134237 other upstream 971990 30810518 ~ 30811236 (+) True G99545
TU134127 other upstream 1353935 30427503 ~ 30429291 (+) True si:ch73-389b16.1
TU134797 other downstream 715937 32875382 ~ 32878615 (+) False nlgn1
TU134831 other downstream 1108250 33267695 ~ 33269160 (+) False LOC120566032
TU134878 other downstream 1715764 33875209 ~ 33878331 (+) True G100087
TU134982 other downstream 2345198 34504643 ~ 34507552 (+) True G100174
TU135393 other downstream 4067642 36227087 ~ 36228574 (+) False dsg2.1

Expression Profile