RNA id: XM_039810768.1


Basic Information

Item Value
RNA id XM_039810768.1
length 2059
RNA type mRNA
GC content 0.49
exon number 8
gene id plin3
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25444399 ~ 25457159 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCTGTCCATTCTGTGGTTTAGCTCAACAGTCGAGAGAAAAAGGCCTTTGTTGTTGTGGGCTGGACCGGGTTCGTTGACCAACATTATACTGCAGGTCACGGCAGGACAGAGGAGCAACAGGCTGCCAGTGAGAGATTGAATCCAGCAGTCAGAATGGCAGACAGCGGGAAGACTAATGAGACTGGAGCTGCAGCAGCACAACCTGCTAATGGAGACCAGCAGAATGTTGTTTCCCGATTGAGCAATTTGCCTCTGGTCAGTTCAGCTTGCGAGGTGGTTTCCAGCGCCTACAGTAGCACCAAAGACAGTGTGCCCTTGCTGAAGGGAGTGATGGATGCAGCAGAGAGTGGGGTCCGAACCCTGGGAGCAGCTGCCACCACGGGGTCCAAGCCTCTTTTGGACATTATAGAACCACAGCTTGCTACAGTAAATGAGTACGCCTTGAAAGGACTGGGTAAGATGGAAGAGAAGCTGCCGATTCTTCACCAACCAGCGGACGAGGTGGTGTCGGacacagtaggtatggtgtaCCAGTCGGTGGCAGGGGCCAAAGATGCTGTGGTGGGGGCTGTGATGGGCGGTGTCGGGCTGACCTGGGCAGCGGTCAGCGGAGGTATCTTCACCGCCATGGGCACCAGGGTGGGCCAGATGGTCAGCAGTGGGATGGGCCTGGCCCTGAGCCAGTCCGAGGACTGGGTTGACCAGAACCTACCACTCACTGAGAGGGAGCTGGCTGCTGTGGCTGAACCTGTCACCAGTGAGGTGACTACCCCGTCGGCAAGCCCCAGCTACTTTGTCCGCTTGGGGAAACTCTCTGCAAAAATACAGGAGCGAGCCCTGCAGCAGTCCCTGGTCCGTGCACGGCATGCCAGGGATGCCACCTATACTACAGTGGCTCAGATTACCAGTACTCTGGACCTGCTGGAGAGCGCCCGTACCAGTATGGGTACCGCCAGTAACCAGATAGGAGGAGCCTCTGAGCAGCTGCTGCAGCGCTGGACAGAGTGGAAGCAGAAGCAGGCTGGAGCTGGACAGACTGAGTCAGAGCCAGATGGGACCAGAGATGAGGCTGAGCAGCTGGAATGGCGAGTCCTCTCCATGGTGCATGGTCTGAGTGATCAGCTGAGGGCAGCATGCTCCAATGTGGTGTCAAGCGCTCAGGGTCTGCCAAGTGCAGTCCAGGACCAGCTTACCAGCGCAAGGCGATCAGCTGAAGAACTGCACTCCTCTCTGGGGAACACCAGCACTATCACACCCCTCCTTCTGGAGCGCAGCCGTCACCACCTGATCCAAGTTCAACAGTCTCTGGATGGTGTAATGGAATATCTTCTACACAACACACCACTCAACTGGCTGGTGGGACCTTTTGCTCCTCAGGTCACTGAGAAGGTAGAGGGAGATGTGGCGATGAAGCAGAGCGGACCGCCCAACTAGAGAAGACTGTTGTGTTTCTCCATGAGTTAATCAATGTGGTGACAGAAGACCGGTGTTTACTGTAGAtggacaatttaaaaaaataacatatctATCTGCTTGCTTTAATGACGGAGGCCTTAAATTCATGtagtcatgtttttttcatgttaATGCACTACATTTTTATTAGTTAATGACACTACATTTGTGATGTAGAAGTTAATGGAATTTAATCATGTCTGAAAGCTCTGACCTGTTGCCTTAGAGAATTTAGATACttgtgcactttttttttttttttttttttccaaaaagatataagcatttttacatttgttgAAAATTAATCTATGCATGTGCCCATACTGATGTTCCCAAGACTTTTGATAATGCCTAACAATAATTCAAAGCATTCCTATCAACACCAAGATCATTTCAAGGCCCTAAATTCCCTTTATGACAATAAAACCGATATGCAAATTGAATGATATGTTGAGTTCATAGCGTGTTCATAGtgtattcatttgtttttttagatttgCAGTATTAATTTCAGTGTTTTGTGTCTGAACCTTGATGGGTTTATGGAAGCAGCTAATAAActgtcaataaaaataaaaaatatgacacAGCACAGTGAA

Function

GO:

id name namespace
GO:0018106 peptidyl-histidine phosphorylation biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0000160 phosphorelay signal transduction system biological_process
GO:0016020 membrane cellular_component
GO:0000155 phosphorelay sensor kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132450 lncRNA upstream 185917 25253473 ~ 25258486 (+) True G98163
TU132401 lncRNA upstream 212003 25229382 ~ 25232400 (+) True G98123
TU132407 lncRNA upstream 252565 25191064 ~ 25191838 (+) True G98128
TU132293 lncRNA upstream 554027 24885420 ~ 24890376 (+) True G98033
TU132274 lncRNA upstream 568737 24837613 ~ 24875666 (+) True G98021
TU132466 lncRNA downstream 22189 25479348 ~ 25479604 (+) True G98177
TU132478 lncRNA downstream 54697 25511856 ~ 25512252 (+) True G98186
TU132480 lncRNA downstream 57891 25515050 ~ 25515742 (+) True G98188
XR_005640183.1 lncRNA downstream 63713 25520872 ~ 25521287 (+) True LOC120565050
TU132488 lncRNA downstream 100954 25558113 ~ 25560035 (+) True G98196
XM_039812468.1 mRNA upstream 216122 25219482 ~ 25228281 (+) True mpnd
XM_039810945.1 mRNA upstream 265650 25096838 ~ 25178753 (+) False LOC120565286
XM_039810944.1 mRNA upstream 265650 25096839 ~ 25178753 (+) True LOC120565286
XM_039812027.1 mRNA upstream 360481 25069211 ~ 25083922 (+) True ssbp3b
XM_039811666.1 mRNA downstream 94 25457253 ~ 25463443 (+) False zgc:77486
XM_039811667.1 mRNA downstream 1423 25458582 ~ 25467003 (+) True zgc:77486
XM_039811561.1 mRNA downstream 11240 25468399 ~ 25476235 (+) True abhd17ab
XM_039811164.1 mRNA downstream 144722 25601881 ~ 25613413 (+) True npl
XM_039811880.1 mRNA downstream 196703 25653862 ~ 25663704 (+) True sec22bb
TU132285 other upstream 570529 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 570529 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 660522 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 1966585 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 2122494 23321522 ~ 23321909 (+) False pole4
TU132486 other downstream 75666 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 273099 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 534347 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1335528 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2570813 28027972 ~ 28084387 (+) False pip5k1ca

Expression Profile