RNA id: XM_039810829.1


Basic Information

Item Value
RNA id XM_039810829.1
length 2721
RNA type mRNA
GC content 0.43
exon number 3
gene id tmem221
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27605960 ~ 27611082 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttttgtagCAGGCCCTAGAAGTTAATGCTTCCAAATGGGATATAGTTTGTGCTATGTACACATTATTAAAATTTAATTACGTACAAGTTTGATTAACTTGTGGGACTGCATCGTTTTAATGCCCTTTTCCCCCCCCTGTCACTGTGTTTTGGGTTTAGTCCGGGAGCTCTGCCTCTCCCAGGAGCGCGTCCACGCATTGTTTCCgtggatccaagagaaaaagtCCATTGTTGTTGCGAAGTTTTTAATCTGGCGATTTAAAGCCCATCACATGCTCAGACTGAGCAGCGGGGCGCTGTACCACAACAGGCAAACtaccgcaaaaaaaaaaaaaaaaaatccacgtTGGAGAGGAAACTATTCATCCCGAAAAGGACCGAGGAAGACATTGTATTCACACAGCAATGCCAGTGCACTTTTTGGGGGGGACTTTAGGATTGACGGAATAAGTGCGTCCGACCagcaaaagcaacaacaacaaaaaaaaaacttctgtaGGAGAAACCGGACCGCCTGAGATTTATGATAAAGATGACGCTCAAGTACAGCCAGCGGTCTCTAATAGTTCTGTCTTTACTGGGGATTTTATCGGCTATCATGTCGGTTTTATCGGTGATTTTGATTTTCCAGCTTCAGTCTCAACAGACGGCAGTGAAGGAGTCTCCCCCTTCCACCTCGGCGCTCATACCCGCTCATATCTGGGCCGTCCTGCTGCCCGTCTCCACGGTGCTCTCTGCTCTGTCCCTCACCCTCCATTTAAGCTCTGTGGTGGTGTGTCTGCTCCACAGCTACTTTTCAACAGAGGTCTGCAGAGGAGAGCAGGACACTGAAAGAGCAGACTGGTTCCTTTTGGATAGCAGAGCTGTACGACATGTGGCTATCGGACTGTTTTGCCTGGGGGTTTCTGTCTACTTGGCAGCTATGTCCATCTTTATGCTCCTCATATTTGAGGTGGAGACAGGCATTGCAAGTGCTTGCGTACTCTCCTCTGGGATCTTAATCCTACTGGTCGTTGTGATCCACTCGCTGGTCAAAGCTTCTTATAGTGCCAAGCACTATCACAGCGACCACCTCGACACCCTCTTCCAGAATGACCACGGAAGCAGCAACATGCCCGTCTCCCGACACTGCGAGCTCAAAATTGGCGTGGACAAACCGCGGATGCAGCGCAGCCAGTCTCACCTCCAGCATCAGATCGCCTACCCTCAGTGTGGCAACCCGAGGCAGCAACAATACCAGCAACAGCAGTACTCCCCTGCTGAAGGCTCCCAGGGCCACGCTAGTGATAAAGACGGCTACAGCAGCGCTGGCAGTGGTCCCCGAATGCACAGGACCCTGTCTACTGAATCTGGTTTACTGCAGGCCCAGGCTAAACCCTGGAATGGGGTCAACAACGAGATGAGGAGTGTCCTTGCACGCAAGTCAGGGATTTCTGCAAAAGACTCTACTCTTGTGTGACATAAAGGAAGCTGAGCTTGTGGTTAGAGAAACTGATGACCTTTTTAAGCATCACTAGAGGACTGCTAACACAAGTGGCGTCTCAGACGGATGTAGAACGGTCAGTTTGGagctttttacacacacaaaaatgggaCAGAGATTGAAAGGCGTACCCAAGTTTTCCCCTTTATCAACTGATTTTTCCTGTTCAGATTATAAAGCATTTTTAACTTGATGAAAGACATATTGAGCACAACGTCTGTATAATTTGTAGTGTTGTTGTTTGAatgagtttgatttaaatctcCCCAGTGTTGCCCAAGTATGAACCTGGCAAATGTATAGCTTTGATTGTAATAATGTCAATACTTGCTCGCTGTATATGGTGGCTTGTTGCCAAATATTTGTGCACAATGTGCAGATGTGTTTTGTTATGTGTTGTTCAAAATGATTTCATATCAAgcataaattaattaatgttttaGAAGATATAATTCAGTTTAAAAGTAGGATGCTTTTTTTGACACCTGAAAAAGGAGATTACGATAATGCTTCACAAAAAACCTGTTAACTTTAATTGTCATTTCAATACACGTGTAAAACctttatgaaaaaaatgaaaatgtataatACAGGCCTGAATGTGATGTCGTCATGTCTGGAGGTAATACTAACCTTGGACACCTCAGTCCAGAGGTAATGAGGAAGTGGATGGGGCATGTGGAGCAGAGACAAGGGGACTGGGTGAGGGGGTCACATCATGTAAGCTTCATGCAGGTGCAAAGGAAAAACAGggcaaataaaacagaaaatgtgaaGCTCCCATTAACTACAAAAGAGTTCAGAACAGGCCTGATAAATATTTTGCAGTTATTGGGGGGAATAAAActgaaaggaaggaaaaaaacgTATTAGCTGATGTCCCAAAATATTACGTGATATACAATTAATAATAAAtggattaaataaaacaaaaacaacaaacaaaaggcATGATATTGTGCAAAGAATAAATGCAGGAGGACAGGATAAAACTCCAGGCACTGAGTCACTTGCGTCTCTAATTTTACTCTCAAATAAGTCAAGTATGCAGAAATTCAGGAAAACGAGATGGATAAGGACTCACAAGTGGATCTTGGACATTTTTGTAGGGGTGGGTAGTATGACCAAAAAAGTAATAACCTATAATAATCATCTGGCTTATTTAAATATTGGCAATAATTGTGTCAGTGACTATTTTTTGTTTGGTAATTGTAATaaaagtgtgtgaaaacctCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133215 lncRNA upstream 18852 27586425 ~ 27587108 (+) True G98723
TU133173 lncRNA upstream 107073 27498223 ~ 27498887 (+) True G98685
TU133149 lncRNA upstream 201123 27401644 ~ 27404837 (+) True G98663
TU133140 lncRNA upstream 210677 27394321 ~ 27395283 (+) True G98654
TU133139 lncRNA upstream 212994 27392273 ~ 27392966 (+) True G98653
TU133263 lncRNA downstream 48614 27659696 ~ 27660061 (+) False ncanb
TU133262 lncRNA downstream 221157 27832239 ~ 27832822 (+) False ncanb
TU133269 lncRNA downstream 237651 27848733 ~ 27848938 (+) True G98763
TU133272 lncRNA downstream 244594 27855676 ~ 27859123 (+) True G98766
TU133277 lncRNA downstream 268235 27879317 ~ 27882311 (+) True G98770
XM_039812035.1 mRNA upstream 21020 27577974 ~ 27584940 (+) True tmem161a
XM_039811355.1 mRNA upstream 85619 27513155 ~ 27520341 (+) True LOC120565509
XM_039811440.1 mRNA upstream 228906 27372809 ~ 27377054 (+) True si:ch211-212d10.2
XM_039811509.1 mRNA upstream 458804 27120698 ~ 27147156 (+) False midn
XM_039811510.1 mRNA upstream 458804 27120699 ~ 27147156 (+) True midn
XM_039810830.1 mRNA downstream 1770 27612852 ~ 27615467 (+) True rfxank
XM_039810832.1 mRNA downstream 1852 27612934 ~ 27615467 (+) False rfxank
XM_039810831.1 mRNA downstream 2298 27613380 ~ 27615467 (+) False rfxank
XM_039811768.1 mRNA downstream 48614 27659696 ~ 27832855 (+) True ncanb
XM_039811770.1 mRNA downstream 48614 27659696 ~ 27832855 (+) False ncanb
TU132947 other upstream 810221 26792687 ~ 26795739 (+) False micos13
XR_005640198.1 other upstream 1586589 25991506 ~ 26019371 (+) False dot1l
TU132604 other upstream 1873783 25730258 ~ 25732177 (+) False slc35a3a
TU132486 other upstream 2058871 25532825 ~ 25547089 (+) True G98194
TU132286 other upstream 2732086 24868017 ~ 24873874 (+) False elovl1b
XR_005640192.1 other downstream 416890 28027972 ~ 28084387 (+) False pip5k1ca
XR_005640167.1 other downstream 526187 28137269 ~ 28146325 (+) False LOC120564865
TU133723 other downstream 1161306 28772388 ~ 28774510 (+) False LOC120565530
TU133929 other downstream 2052551 29663633 ~ 29665090 (+) True G99297
TU134127 other downstream 2816421 30427503 ~ 30429291 (+) True si:ch73-389b16.1

Expression Profile