RNA id: XM_039810868.1


Basic Information

Item Value
RNA id XM_039810868.1
length 3643
RNA type mRNA
GC content 0.44
exon number 24
gene id slc44a5b
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24947600 ~ 24988333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTAAACACGACTGACGCTCAGCTGCGTGGCCAAAGCATCCACCAAGAGCCCAAGACCTCTCCAGGTTCCTGCTGTGTTTATTTCTCGACGGGACCGCTGAAAGGCACTAGCTAAAATAAACTGCGGTTCACCTCGACTCTCATATGCGGTCTCCAAAACCAAGACGACGCAGCATTTGTTCTACTAAGTGCCATGGCTAAGAACACGGACACCCCCTCCTCTTACTATGCAGCATTTGTTCTACTAAGTGGCATGGCTAGGAACAAGGACACCCCCTCCTCTTACTATGGTGAGCCGCGCAAGTTTGACCCAAAGTTCAGAGGACCTGTTCACAAAAGGAGCTGCACTGATGTGGTTTGCTGTGTTATCTTCATCATTGTCATCCTCGGCTACATCGCTCTGGGTACCGTGGccTGGATTCATGGCGACCCCAGGAAGGTGATCTATCCAACCGACAGCCACGGCCAGTTCTGTGGCCACAAGGACACCCCCAATGCAAACAAAGCCATATTATTCTACTTCAACATGTTGAAATGTGCCAATCCTGCAGTTTTGATTAACCTCCAGTGCCCTACAACCCAGCTCTGTGTCTCCAAGTGCCCTGACAGATTCTCAACTCTCCTGGATGCCTGGGATACCAATAACTGGGAGTATTACAAGCAATTCTGCAAGCCGGGCTTCAAGATTAGCAGTAAGTCAGTTGAAGAAGTCATACGGGATGAAGACTGCCCATCTATAATCGTGCCAAGCAGGCCTTTCCTTCAGCGGTGCTTCCCTGATTTCATTACAAGAAATGGAGTGTTAACTGTAGCCAATCAGACCATCTTCAAAGACGGTAACAACAAACGGAGAAGTGTCAATGACCTAAAAGATGCTGCTAAGGCTGCCAGCTCTGCACCCAGAGAGCTCTGGACAGATATTTCAGGAGGTATCGCCAATCTGCTGAATGCCAAAGAAGTTGGCATGAAGATCTTTGAGGATTATGCAAATTCCTGGAACTGGATCCTCATTGGTCTGGTTATAACCATGGCGGTCAGTCTGGTCTTTATCTTGCTGCTGCGCTACACTGCCGGCGTGTTCCTGTGGCTCATTGTCTTGAGTGTGATCGCTGCGATCGGCTACGGTATCTGGCACTGCTACTGGGAGTACAGCTCTCTGAGCGGGAAGCCAGGCGCTAATGTCACCATCTCTGATATCGGCTTTCACACAGACTTGAGTATTTTCCTTCAGCTCAGACAGACGTGGCTTATCTTCATGATCTGTCTTTCTGTGATTGAGGCCATTATTGTGGTTATACTGATATTTCTGAGGACAAGGCTGCGCATCGCTATTGCATTACTGAAGGAGGGAAGCAGGGCCATCAGCTACATCATGTCCACTCTCTTGTACCCGATCATCACCTTTCTCCTTCTGGCCATCTGCATCGCTTACTGGGTCGTCACAGCAGTCTTCTTAGCATCATCTGGCAACGCAGTCTACAAGGTCGCACCTACTGATGATAAATGCATGTATGCCAACCTCACATGCAGTCCAAAGACATTCAGTCAAACCAATATTACCAAAGTGTGCCCCGGGTCACAGTGCATGTTTGCCTTCTACGGTGGAGAAAGTGTGTACCATCGCTACATCCTAGTCCTCCATGTGTGTAACCTGTTCGTGTTCCTCTGGCTGGTCAACTTTACCATGGCGCTGGGCCAGTGTGCCCTGGCCGGGGCCTTCGCGTCCTACTACTGGGCCCTGAAGAAGCCAAACGACATCCCCGCATGCCCCCTCTACTCATCTTTCAGCCGAGCCATACGTTACCACACAGGTTCTCTTGCCTTTGGTTCTCTGATCCTCTCTGTGGTTCAGATGTTCCGAATTGTTCTGGAGTACCTGGATCACAAACTGAAAGGTTCTCAAAATGCATGCGCTCGATTCGTGCTTTGCTGCCTCAAATGCTGCTTCTGGTGCCTGGAACATTTCATCAGGTTTATAAACCGAAACGCATACATTATGATAGCAATATATGGAAAGAACTTCTGCACCTCTTCTAAGGATGCTTTCTTTCTCTTGATGAGGAACGTTATTAGGGTGGCTGTCCTTGACAAGGTGACAGACTTTCTGCTCTTCTTGGGAAAACTGCTTATTTCAGGAAGTGTTGGTGTTCTtgcatttttcttcttcacacatAAAATACCAGTCATTCAAGAGGAGACGCCATCCCTAAATTACTGCTGGGTCCCCCTTCTGACGGTGGTATTTGGATCCTACATGATTGCACATGGCTTTTTAAACGTCTTTGCCATGTGTGTGGACACGTTGTTCCTGTGCTTTTGTGAAGACCTAGAGCGGAATGACGGTTCTTCTTCCAGGCCCTACTACATGTCTCCTGGCCTGCACAAGATCCTGCGCAAAGGAGAGGAGGGTGCCAAATTATGCACTGCCTCTTGAGCAATGTGCGGCCACTTTTACTGCTACTTTAACTgctgactcactcactcacttctCCATATCTGTATGTGTTGGGGTCTGGACATTTGAGAGCGAGTACTGTAGGGCTAAACATCAACACTGGATGCATCCCAGCTTGGTCAGGAATGGCTTGGACATGAAAGGACATGTTTTTACTTCGGTTCCTCCCAGAAAAGGCATGGGCGACTAGAAAAGACCAGTTTCCTTACTCTTGAGCCAACTCAGATACTTGCCTTTTTTTCTGCCacgctttcttttttcttctctgtatTCTCTTCTGACCTCTGCCTTACTGAGAGGGTACATGCTAACTCGCAGGACGGACACACAGGCTAAGATGAATATGATATGAGCATTTTTACCCAAACAAACATAATGGAACTTAAGATGTACAGATGCCACTGATGGACTATGGCATAAGGTtttaccatttaaaaaaaaaaaaaaaaaaaaaaaaaaatggtggacTTATGGGGCACACCTCTTGTCGCACTTTGGTCTTCTAGTGTAAAATCATGTTTTGTATGCACTTTGACATGTGGGAAAAGAACCATGTGATTTATTTCTTCTGTCAAGCATGATTATTTTGCTGGCTGTTGATATTTACCATTGGCTTTATATGTTGCTTTGATCCACCGTATTTATACTAACACAGATCCAAAAATGGTGTGTATTTCTGCACTTAGCAAAACTGGTTTCTCTTAttttacataataaaaaaaaaaagaaggtcaCAATCATTTCAAAGTTTCCATTATAAAGATCAGCTCACAGATGTACTGTAAACCAGACAGAGACTTTGTGGGAGGTTAAGacttcaaaatacattttatggtTTTTGCTTACGATTTGAATAGAACAGTTTCCAGGAAACTTCTGAATGCAGCCACTAGTTTATGTGCCTagttgtgaaaaaaataaaaaaataaattgttccTCTTATTCTGTGGTTTTAGACCTTACTCCAGGAACCTTTTTTGCGATACAGTTTATAAAAGGATGTCAAAGCCATTTTTGGTAAATTTTTTATTGGATGGTTCAAATGTATTGTATTGCGAAGTATAATACACGCATCTATCTGGAGGTTATTCAGTGTTCTTTTTGTATAggagaattttttttatcaatgaaatccaatgaaaatgtgaaatcaTTTTTTTTGAATAAACATAAATGGTTTAAGTTTT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132293 lncRNA upstream 57226 24885420 ~ 24890376 (+) True G98033
TU132274 lncRNA upstream 71936 24837613 ~ 24875666 (+) True G98021
TU132269 lncRNA upstream 112085 24833437 ~ 24835517 (+) False G98019
TU132407 lncRNA downstream 202996 25191064 ~ 25191838 (+) True G98128
TU132401 lncRNA downstream 241314 25229382 ~ 25232400 (+) True G98123
TU132450 lncRNA downstream 265405 25253473 ~ 25258486 (+) True G98163
TU132465 lncRNA downstream 435578 25423646 ~ 25479232 (+) True G98176
TU132466 lncRNA downstream 491280 25479348 ~ 25479604 (+) True G98177
XM_039810188.1 mRNA upstream 73686 24852287 ~ 24873916 (+) True elovl1b
XM_039810187.1 mRNA upstream 171942 24765447 ~ 24775660 (+) True LOC120564918
XM_039811563.1 mRNA upstream 193733 24749017 ~ 24753869 (+) False LOC120565649
XM_039812166.1 mRNA upstream 214443 24728796 ~ 24733159 (+) False LOC120565988
XM_039811421.1 mRNA downstream 21796 25009864 ~ 25029216 (+) False erich3
XM_039811420.1 mRNA downstream 21875 25009943 ~ 25029216 (+) True erich3
XM_039812027.1 mRNA downstream 81143 25069211 ~ 25083922 (+) True ssbp3b
XM_039812028.1 mRNA downstream 81143 25069211 ~ 25083922 (+) False ssbp3b
XM_039810945.1 mRNA downstream 108770 25096838 ~ 25178753 (+) False LOC120565286
TU132285 other upstream 73728 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 73728 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 163721 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 1469784 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1625693 23321522 ~ 23321909 (+) False pole4
TU132486 other downstream 544757 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 742190 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 1003438 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1804619 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 3039904 28027972 ~ 28084387 (+) False pip5k1ca

Expression Profile