RNA id: XM_039810896.1


Basic Information

Item Value
RNA id XM_039810896.1
length 3346
RNA type mRNA
GC content 0.49
exon number 20
gene id tubgcp5
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40052317 ~ 40069649 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGCCTTGAAGAGAAGAGGTTCCAACGGTTGCTACGTACTGTAACTTGCTGGAGTAACGTACAATTAATTGTGGGACATAGCGATAAATTAGTGCTCCCTTTGAATGGTGTATTTAGTCGGTTGTGTGTTCTTATCACTAGTCATTGGACGTTTTCGCTGCACAAGTTGACAGTTTTAAACATGAACTTTTACATGGAAATTTAAACATATCAATGTTTAAGTTTAGGTTGATGTTGCGCATGCGTATTCAGCCTCGTTTGTTGTTGGAGGCAAACGCCGCGCGGTTGTGAAATTGAAGGAATCAGTGGAAACGTAGCTAACGTTGTCGTGTCTTTGAAATAAATGGCAGTATTTAACATTTTATCTTTCGTGCTAGCCCTTTAGTTTGCAGAGTCGCAAGGTCAGCAGCAGGACTGACCGAAAGCGAGTtctactagctagctacatgctTGTAACGTCAAGCTAACTGCAGCGCCGCTGTCAACATCAACATGACACACTGGAGCACCTTcgaaaaggagacagagagagaaacgaAAGCGTTAATAAGATGTATCAGCGGGGTCGAGGAAGAGGATGACCAGAACTTTCAGCTGGCACTGAAATTTGCCTGGACTAATTTCAGGTTTCATCGTTTCTTGGACGTGGACAGCCATAAAGTCCAACGCAGTATAAGTGGAATCTATGAAAAGCTCATGGTCCACTCAGACGTGAGTAAAGCAGAAAGCTGGATGAGGCTGACTGAAGAGTTCCTGAACACACCTTTACCTAATACAGATGGAACAAAGAGTGATGTACACTACAGTGTCCTGTCACTGCTGCTCTTATTATCGGAGTCCCCCTCAAACACAAACTTTACTGAGAGACCCAGGGTAAAGGAGGCCGAAGAAGTGGACAACTTTGACTGGGCCAAATATCTGATGGAGGGTGAGGACATAGACATTGGACCATATCCAGATACCCCTgagtGGTCTGAGGAAGAGAGCGAAGATGATGACAGccagcagccaatcagcaggGAAGACTCTGGGATCCAGTTGGACAGAACGCCCCAGGAAGACcaggacaacaacaacaagacagtTCCAGTTACATGGAAAGtggGTGAGCCTGACGCTCGGGCCTGGCTTGAACAGCATGTAGTGACACCGTACTGGGTGGCTCATGCTCCTCGTTTTCCTCACAGCTTGCATTTGCACTCCAACTTGCTCAATGTGTGGGATCAGCACTTGTATAACACTGATCCATTGTATCTGCCGGAAGAAAAGGCCTTTGTCACAGAGACCCAAGTCATACGGGAGACATTGTGGCTTCTCTCTGGGGTGAAGAGACACTTTATATTCCAACACCATGATGGAAAAGTGTCAGTAAGGAATAACGTGGTGGTAACTCATCTGACCAGTaactgtctgcgctctgTACTGGAGCATATTGCTGTGTACGGGCAGGCGGTGTTCAGGCTGCAGAGGTTCATAGACGAGGTGACGGGGTACAGCTCGGAGCCGTGCCCACCAGGCTCCGGTTCCTCCTACAGCTCCAAGAAGGGCTCCGAGCCTCCCTTCAGGACCTACCAGGCCTTTGTGTGGGCACTCAACAAGTATTTTACCAGCTTCAAAGAGGAGCTCACCACAATTGAGAGAGAGATCATATGCAATGATGAGACGGTGACCCTGTCTGCCGTTCTGGAGCGACTCAACCCTCACTTGGCACAAATCAAAGTGCTGCACAAAGTCTTCTGCACCGGAGTCGCCGAAGTCCCCCCTGAGACCCCGAATGTGGTGCGGGCCTCTCACTTGCTCAACACCCTGTACAAAGCTATCATAGAGTATGACAGCGTCGGGGAAGCCTCAGAGCAAGCGGTGGCCTTGTTATTTTCTCTGTGGACGGAGACAGTCAGACCATATCTGGAGATTGTGGATGAATGGATTGTTCACGGCCACCTGTTTGACCCTGCCAAAGAGTTCATCATCCAGAGGAACAAGGACGTCCCAGTGAACCACAGGGACTTCTGGTACGCCACGTACACGCTGTACAGTGTGTCTGAGACGGTGGAGAATGAGGAGAAGCTGAACGATGCAGCCAGCGGGAGCTCTGGAGGCGATCAGGGCTCCAGCAACAGGCAGCTCACCATGGTGTCCTTCCTCAAACCCGTGCTCAAGCAGATCATCATGGCCGGGAAGTCCATGCAGCTGCTCAGAAATCTGGACTGCAAAGAGACGGAACAGTCTGAGAGATCCTCCAGAGATGCAGAGAGGAAGAGTTTATACACACTGTTTCTGGAGTCAGTGCAATCACGCCTTTGTAGCCAAGAGGAGTCTCCCACAGACACCGTAACGGAACAACAGGCCACCAGGAGGAGCCTCATAAAGATGCAGGCCATCATTGCACAGAACCTGGAGATCGAAGACGTCCACGATCCGTTGTTGGCCATCAACTTTGCCAGGCTGTACTTGGAGCAGACTGACTTCCATGAGCGTTTCTCTGGAGGCGATTTCATCGTGGACCGCTCATCTCAGGCTGTCACCTGCCAAACATTTGAGCTCACCCTGCGCTCTTGCCTCTACCCCCACATTGAGAGGAGGTACATTGAGTGCTGCGGGAACCTCATGAAGACACTGAAAAAAGACTACAAGCTGCTGGAATACCTCCAAGCTATGAGGAACTACTTCCTGCTGGAAGCTGGAGACACCATGTACGACTTTTACACGGCCATCTTTGACAAGGTGCAGGAGAAGGAGAGCTGGCAGCAGCCGTCTTTTCTCAACGTTCAGCTGCAGGAGGCAGTGGGACAGCGCTACCCGGAGGACAGCGGCAGGTTGTCAGTCTTCTTGGAGACCATTGACCCTGCCAGGAAAAAACATCCTGTGAATAATTTAGAAGTGCTTACCCTGGGTTACAAGGTTCCCTGGCCGGTTGACATTGTGATCAGCTCGGAGTGTCAGAAGATCTACAATCAAGTGTTTCTCCTCCTGCTGCAGATCAAATGGGCCAAAtacagtttggacacacttcGGTTCAGTGATTTCACAGACATCACTAAGAAACTGGAGGGAGCTCTGGCTGAGGAAGTAAAGGTCAAAGAGCCTATAAATCAGCAGATTCACAGAATGTGCCTGCTGCGGGTCAAACTAATGCACTTTGTCAACAGCCTTCACAACTACATCATGACCAGGGTACGGTATGCTGCAAGTAAAAGAAGAGAGACTATTTTGAAAAGTCATATTGGTGGTGCTTTCAATGACAGCAGGAAAGTACacaatttgattaaaaaaaacactagtaTGGTACTTCAAATTGAAATGTAATAATTTGCATACAACCTTAAATCTGTCTGCATTGTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640213.1 lncRNA upstream 6811 40044182 ~ 40045506 (+) True LOC120565265
TU136956 lncRNA upstream 33624 39984470 ~ 40018693 (+) True G101666
TU136964 lncRNA upstream 48478 40000905 ~ 40003839 (+) True G101674
TU136839 lncRNA upstream 143807 39905036 ~ 39908510 (+) True G101600
TU136817 lncRNA upstream 180144 39871656 ~ 39872173 (+) True G101579
TU136979 lncRNA downstream 61359 40129801 ~ 40133354 (+) True G101687
TU136980 lncRNA downstream 66765 40135207 ~ 40135500 (+) True G101688
TU137096 lncRNA downstream 191921 40260363 ~ 40260609 (+) True G101796
TU137125 lncRNA downstream 418349 40486791 ~ 40487021 (+) True G101823
TU137133 lncRNA downstream 439058 40507500 ~ 40507759 (+) True G101831
XM_039810974.1 mRNA upstream 15997 40006247 ~ 40036320 (+) True slc9a7
XM_039810975.1 mRNA upstream 15997 40006250 ~ 40036320 (+) False slc9a7
XM_039812076.1 mRNA upstream 88781 39959058 ~ 39963536 (+) True gtpbp6
XM_039812077.1 mRNA upstream 88781 39959087 ~ 39963536 (+) False gtpbp6
XM_039812224.1 mRNA upstream 98063 39945687 ~ 39954254 (+) True nit2
XM_039810407.1 mRNA downstream 3600 40072042 ~ 40125946 (+) True cyfip1
XM_039810362.1 mRNA downstream 70991 40139433 ~ 40196566 (+) False herc2
XM_039810366.1 mRNA downstream 70991 40139433 ~ 40196566 (+) False herc2
XM_039810363.1 mRNA downstream 70992 40139434 ~ 40197238 (+) True herc2
XM_039810364.1 mRNA downstream 72241 40140683 ~ 40196566 (+) False herc2
TU136718 other upstream 486362 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 587867 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 1171712 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2562245 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2920012 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 446651 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1156649 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1157192 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1384232 41452674 ~ 41453306 (+) True G102165

Expression Profile