RNA id: XM_039810913.1


Basic Information

Item Value
RNA id XM_039810913.1
length 1153
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC120565276
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39747748 ~ 39766179 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTATGAGCGCTCCATTGGCCAATCAGAAGCTTGATGCCAACTGGCCGTGTATGTTTCAGGGTGGCGCTGGGTAGTTCATTTCGTCAGAGGGGGAATACAGTGTTGTTATTCAAGATGCAGTTCATGCTTCTGTTTAGTCGACAAGGCAAGCTCAGGCTTCAGAAATGGTACGTGCCTTTGTCTGAtaaggagaaaaagaagatcACCAGAGAGTTGGTGCAGACGGTCCTGGCTCGAAAGCCCAAAATGTGCAGCTTTCTGGAGTGGAGAGACCTCAAGGTTGTATATAAGAGATACGCCAGCCTGTACTTCTGCTGTGCCATAGAGGACCAGGACAACGAGCTGATCACACTGGAGATCATCCACAGATATGTGGAGCTGCTGGACAAATACTTTGGCAGTGTTTGTGAGCTGGACATTATTTTCAACTTTGAGAAGGCTTACTTCATTCTGGATGAGTTCTTGCTGGGTGGGGAAGCTCAGGAGACGTCCAAAAAGAATGTGTTGAAGGCCATTGAGCAGGCTGACCTGCTACAGGAGAATATAGACTTTCAGATGCGCCTGTTTGCAGGATGCCAAAGAAGCAGAGACACCGCGCAGCGTACTGGAGGAAATTGGACTGACATAAACGTGGTCCATATCATCATCCACTTGCCACACACATCCTTCATCTGCCAGCTGCTGTATGTAGCAGATAACAACTCCAATTCACCTTTGAGCACACTCAACTTTACAGTGACACATACACAACTCTGCCTTTGTTTTCTACCTGTTTTCTGAGACAAACAATGTAGCACTGTTTGGGTTATTTCCTGCTGAGTTATTTGTCTTGTGTGATGACGTTAACTGTTAACTGTAGACGTTAACAAGGGGAAATGCAGCATGATTAAGGTTTTTATTTGTTGCTGTGTTCCagtcatagactgtataatattaatggacagagcatgcgtgacgtcacccattggtttgtggagatctgctatgagtcgtcgagtttgccgttatgGGCGCTTTTAGAccacgattttagacgagagggaggagcccTTAAACTCTACCTTACaaactttcactggcaatcacatcatagccacgccctaaaacaccccctgctttatcgccgattttaaaatcataatcataattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136796 lncRNA upstream 7477 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA upstream 7785 39739347 ~ 39739963 (+) False LOC120565298
TU136732 lncRNA upstream 67222 39680078 ~ 39680526 (+) True G101519
TU136719 lncRNA upstream 181793 39564141 ~ 39565955 (+) False reps2
TU136689 lncRNA upstream 309683 39437654 ~ 39438065 (+) True G101484
TU136817 lncRNA downstream 105477 39871656 ~ 39872173 (+) True G101579
TU136839 lncRNA downstream 138857 39905036 ~ 39908510 (+) True G101600
TU136956 lncRNA downstream 218291 39984470 ~ 40018693 (+) True G101666
TU136964 lncRNA downstream 234726 40000905 ~ 40003839 (+) True G101674
XR_005640213.1 lncRNA downstream 278003 40044182 ~ 40045506 (+) True LOC120565265
XM_039810964.1 mRNA upstream 7471 39693912 ~ 39740277 (+) False LOC120565298
XM_039810962.1 mRNA upstream 7471 39693912 ~ 39740277 (+) False LOC120565298
XM_039810966.1 mRNA upstream 7471 39693912 ~ 39740277 (+) False LOC120565298
XM_039810971.1 mRNA upstream 7471 39693912 ~ 39740277 (+) False LOC120565298
XM_039810965.1 mRNA upstream 7471 39693912 ~ 39740277 (+) False LOC120565298
XM_039810924.1 mRNA downstream 9614 39775793 ~ 39816716 (+) True shroom2a
XM_039810925.1 mRNA downstream 9614 39775793 ~ 39816716 (+) False shroom2a
XM_039810926.1 mRNA downstream 9616 39775795 ~ 39816716 (+) False shroom2a
XM_039810929.1 mRNA downstream 15333 39781512 ~ 39816716 (+) False shroom2a
XM_039810927.1 mRNA downstream 33749 39799928 ~ 39816716 (+) False shroom2a
TU136718 other upstream 181793 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 283298 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 867143 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2257676 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2615443 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 748914 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1458912 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1459455 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1686495 41452674 ~ 41453306 (+) True G102165

Expression Profile