RNA id: XM_039810921.1


Basic Information

Item Value
RNA id XM_039810921.1
length 1843
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120565276
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39747748 ~ 39766179 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTATGAGCGCTCCATTGGCCAATCAGAAGCTTGATGCCAACTGGCCGTGTATGTTTCAGGGTGGCGCTGGGTAGTTCATTTCGTCAGAGGGGGAATACAGTGTTGTTATTCAAGATGCAGTTCATGCTTCTGTTTAGTCGACAAGGCAAGCTCAGGCTTCAGAAATGGTACGTGCCTTTGTCTGAtaaggagaaaaagaagatcACCAGAGAGTTGGTGCAGACGGTCCTGGCTCGAAAGCCCAAAATGTGCAGCTTTCTGGAGTGGAGAGACCTCAAGGTTGTATATAAGAGATACGCCAGCCTGTACTTCTGCTGTGCCATAGAGGACCAGGACAACGAGCTGATCACACTGGAGATCATCCACAGATATGTGGAGCTGCTGGACAAATACTTTGGCAGTGTTTGTGAGCTGGACATTATTTTCAACTTTGAGAAGGCTTACTTCATTCTGGATGAGTTCTTGCTGGGTGGGGAAGCTCAGGAGACGTCCAAAAAGAATGTGTTGAAGGCCATTGAGCAGGCTGACCTGCTACAGGAGAGCCAGAATGAAGACTGGGGAAGTTTGCCAAATGAGGAGCTCTTGTAATGGGCCTAGAGTCCATCCGTGGCTCCATCCAGGCAATTTGGTAACTACTAGACTGgtgcagtcagtcagtcagcatGGGTTTCCAGTTGTGCGTGCCGTGGACTACCTCTGCATGTTCTTCTGTCGGTATTGACTGTGTCTCATAACTCTGAGTGAAAAACATGACACAGCGTAACAACAGGCATGAACTCAAGCTGGAATGTTCAGAACATATCTGAATATGCGCAGTTTCACTAACAGGCGGCATAATCTAACAATTGCATTGTACATTATTGTAGTAGATGATTtatttgaatttccatttacaTGGATGCAACTTGTTTCGTTTTTAAGAAGTCACtcttttaaaaatacatttccaactttaattattactattttcaTGGATAAGTGAAAAGAGTTATGCTGCCTGTGTGAAGACCAGCCTGTAGTTTTACTAACCGCATTGAATGGAAATGCTCAGATGAATGATTCTGTATGTCTTTATTTGAAATGGTAGAAAAGGAATAACAATAACCCTAACATGTTACATGTGGAAGTATTTTACATTGACTAATATTCATTCCGCAGGATTTTGTACGTGGTGTTATTTGACTTTAAAATGACCATTTTGTCCATCCATTACACAAACATCTTATACACCACTTGTTGAAAAATTTGACCAAACATTAGGAAATTCTGCAACTCACCATTGCACCCTGGTGTTTTAAAAGTTCAAATAattagacatactatacgagcaaaaaaacaacaacaaaaaaaacaccctgaTTTTTATAATTGGAGACAAGGATAATTGTCATCCTTAAAGAAAATCTAAACATAATGCACATAGAAGTTTGTGAAAATAATGCTGGGGTTGAGTCGGGGCATATTTGGAATGAGTGCCTCTGGCTTTAGTAAGTGCATAGTGCAGTAATTACGTGGAAAACATACCACAGGGGATTTGGTGGAAGTTATTTTAATAAGCCTTTAATGAAACATTTCTCAGGAACGGGTCATTACTTTGGTGCCAGCAAGCAAGCATATCTTCTTTTGGAATAATGAAGCCTCAGAAGATTTCCTGCTCAGCTCAACTCTGCATGTTAGACTTCAGAGATAAATTGAGCCGCGACGTCCTCATGAAGAGGGCATTGTTATGGTGGCGGTGCCCGAGCACGTACTGTAGATGTGTAGATGCTGTAGCTTTCCTGAGAGATTGACCAGTGGTGCCATGTTCTGTTTATTTGTGTCCTTATAAAAACAATCTTTGCC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12394 AP1S1_2; AP-1 complex subunit sigma 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136796 lncRNA upstream 7477 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA upstream 7785 39739347 ~ 39739963 (+) False LOC120565298
TU136732 lncRNA upstream 67222 39680078 ~ 39680526 (+) True G101519
TU136719 lncRNA upstream 181793 39564141 ~ 39565955 (+) False reps2
TU136689 lncRNA upstream 309683 39437654 ~ 39438065 (+) True G101484
TU136817 lncRNA downstream 112848 39871656 ~ 39872173 (+) True G101579
TU136839 lncRNA downstream 146228 39905036 ~ 39908510 (+) True G101600
TU136956 lncRNA downstream 225662 39984470 ~ 40018693 (+) True G101666
TU136964 lncRNA downstream 242097 40000905 ~ 40003839 (+) True G101674
XR_005640213.1 lncRNA downstream 285374 40044182 ~ 40045506 (+) True LOC120565265
XM_039810967.1 mRNA upstream 7471 39693912 ~ 39740277 (+) False LOC120565298
XM_039810924.1 mRNA downstream 16985 39775793 ~ 39816716 (+) True shroom2a
XM_039810925.1 mRNA downstream 16985 39775793 ~ 39816716 (+) False shroom2a
XM_039810926.1 mRNA downstream 16987 39775795 ~ 39816716 (+) False shroom2a
XM_039810929.1 mRNA downstream 22704 39781512 ~ 39816716 (+) False shroom2a
XM_039810927.1 mRNA downstream 41120 39799928 ~ 39816716 (+) False shroom2a
TU136718 other upstream 181793 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 283298 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 867143 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2257676 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2615443 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 756285 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1466283 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1466826 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1693866 41452674 ~ 41453306 (+) True G102165

Expression Profile