RNA id: XM_039810928.1


Basic Information

Item Value
RNA id XM_039810928.1
length 6118
RNA type mRNA
GC content 0.50
exon number 10
gene id shroom2a
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39775793 ~ 39816716 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACGTAATCCTGAAGGAAATCTTCCCTCCGTTCAAACTACTTCAGCCCAGAGAACTTAGTTTTATTCATGGCCATACTGTGTTGCATATTCTGTTTTTGAGTTGTGGTTGATGTGTGTTCGGAGGTAGTGGAGTTGTGCCATGATGCTCAGACCTCAGCGGCCTGCATGTCTCTTCATTTTAGCTCGTCTTTCAAGTGTCTGTGGAATGCAGTGCCTGACCAGCACACGGGTACAACTGGCCTCACTTCCAAATTGAGCTCCGGGCTAATATTATTGTATGGTCTTTTGGATAACACTCTTCTTCTTTGTGTCCATTTTGAATTCCTTCATCCAGATGTTTGGAATATGAAAATGGTGGATATTGTAGCTCAGAAAATGCCCTCTGAGAATGACGTACATGTGGCAAGAAGCTTTCTTACGAAGATTTTGCGAAGTTCCATGAGGCGGAATGAACCCATAAGCAGGCCTCACTCCTGGCATTCTACCAAGTTCAAtgacaaccaatcagagactGCCAAAACACAGTCTCCACCCACCCAAGTCTGGCACACGAGATATGATGCAAGCTCATCCTCAACTGATCTCTCCTCTGGCTGGGAGCAAACAAACCTGCGCAGAGTATCCGACCAGTTCAGCTCTCTCGGCAGTATGGACAGTCTAGAACATGTCTCACACCCGTACCCTGCCGGTCAGCTGTCACCTGCCAAGTCCAACAACAGCATGGAGCATCTTGGAGGAGGAAAACGAGACTCTGCCTACAGCTCCTTCTCCACCAGCTCTGGTACACCAGACTATACCCTCTCAAAGAGCAATGCTACCTCGACAGAGAACATGCTCTATAAAGTCGGTCAGTGGGATGCAGCAGGAAAGCACAACAATGGCAGAAACAGCCAGAGCCTGATTGAGGGAGTCAAACTGGACAATAGGGTGGCGTACTTCCAGATGCCAGGCGTTAGCTCAGGCTGCGCGGGTCAACAGACTGAGGACTCGGCCGGCTCCCGCCATTCCACTTCAAGTAGAACCAGCTTAGGACCTGTTTGGCATGTccctgaaaaaaagaagactgcttccccctctcctccccctccccctccacctGCACGTAGTGACAGTTTTGCTGCGACAAAGGTACATGAAAGGGGGCTCATTATAGCTCACCCTGAAGGACCTGAATCCTATGTCCCCTGTAAGACTTCCACTGAAAATCGCCGCAGCCACAACCCATCCCTGAAAAATGACGGCGACGTTTTTCACACTTCATCTGATAAATCGAATCCTAACCAGTTCAGCTCAAACAAGCAGTACTCCCTGTCCAGCAGTGATGTTCACCAAGGCCAGCCCTATCATCAAGGAAATCCTAGTGATAAAAGCACTTTTTTTCAGCCCTGGGCTATGTCCATTCCAAAGCCGCAGAACGTAGCTGGCTACTATAGTAGCATGCAGGAACTTCCTACTAACGGTTCTGCACAACACTTTGGTCAGAACCAGAGAAGGAACCTAAGCACCTCGCTGTCTCCCACTGCTGCTGACCAAAACACGGACAACAGTGGACAAAGCCGATACTACTGTGTCACGACATGTCAGCCCGCGCAGCACAACCCTCAGCCCTTGTCAGGAAAATCAGAGGACAGGAAGAGTATCACAGGCGTAGACCTGGCACAGGCTGGAAATGAGCGGAACTCTCTTAGCCCACAGACAGTCACCCAAGTGAAGTATCATATGCCCCAACAGCAGcaacactctctcactctctctcactgtaaAGACAGTAATGGATACAGCAAGCACCAAGTTACTACTGTACTAGAAACCTCTGTACCCAAATCCAGCTCTGATGATAGTGGAAGCCAGAGTGGACACAACTCACATCATGCGGAAGCTCAGTTCATGAGTTATCCTCCTAGCAGACCGTCTGAACAGCGGAGGTCTCTGCCACCACAACTTAGAGAGTTACTCCAAGACATGAGACATCACAGCCAAGTGAGCAACAAGATCTGCCCCCAGGCAACCCCCATGCTTCACTCTCTATCCATGGATGCTGCAGGCCAAGATGAGAAAACAAAAGGCCTGGACTCTGAGGAGTCCCTTGAAAGCAAACAGTTGAGGCGCAGCGACCGTTTTGCCACCACATTAAGGAATGAAATCCAGATAAGAAGAGCTAGGCTGCAGAAAAGTATGAGTGCAGCTACCCTTCCTGTTACTGAGGGTGAGACTGAAGATGATCAGGATGTCTGGAAGTCCACTGAAAGCACCACCCCGACCTCTGCAGGGGGCTCCTTCACCAACTCCTACAAGGACAATCTGAAGGAAGCACAAGCAAGGGTGCTCAGGGCTACGTCTTTCAGGAGAAAAGATCTGGAGCCTGTTCTACTGGAGCACCCTGCAGCTGAGGCCTTACCTAACTACCCATCCTCAGCGTTGGCCCGGAAAGATGTCACCCCTCTGCCAACAGTCTCAGAGTCTGTAATGAGTAAGTCGGGGCCTGGCGGTGGTCAGGTAACTCGCATTGGTGGCCGTAAGCGTTTTCCTACAGAAAAGAAGGTAAGGTGTTTCTCTGAACCAGACAAAATCCACCAAGTTGGGGTTAAGGAAGATCTCCCTCACAATGAAAGCGCCTCACTAGACCAACAGAAGCTCCTTACAGAAAGTGGGAAACCTGCTTTCCCCAATCACATTCCCCCTCCATGTTATACAGAGACCAAGGCCCTAAGTCTTTCCTCCACCAGTGAAACTGAGGTCACAATGAAAAGCATCAGGAGCAGAGAGTACACTGAAGAGGTCCAGGGAGGTCCTTACTCTGCACACAAACAGTTCGTCTTAGACCAGCAAAGACTGGGCACCTTCGCTGAGTATGAGGCAAGGTGGAATATACAGAAACCCCCATCAGAAACCAGAGCCTCCGGCCGGTACCGGTCCGCTGATAACATCCTGGATCCGGGACCAGAGGAGAGAACCAAAACCACCTGTTTCCACGAGAGATCGCGATCATCTCCGTCAACTGACATCTATGGACAGAAGATTCAAGTTCCTGCAAGAAAGTCAGAGACAGAATATTCCCAGACGGAGATTAAACCAGCTGAACCGCTCAACACTGCCACAGAGTTCTCTGACAGAGGGCCGGGTGACTGTAAAGCGAGAGAAAAGCCTGTGGAGTTTGAACATTACTCAGCGCCACCTACTCCGCCCATGCACCAAGGAACCAACCCTGACTGCGGACACAGAGCTGCTCCTGCCACTGTGAACCACAGACCCACGTCTATCTCCCATAGTCTCCCAGAGTCTGGCCTCCCTCAGCCTGAGGAGCGAAGCCACACAGAGCCGCTGCCGTCTGGGCCCAGGAGGAAGCCCTCTGCGCTGGAGAAGCCTCCCCCACCCAAATGCCCAGAGGTCGACTCCCACGAGTCCTTCGCCGGTTCCCAGAGTGAAATCTTCACCCACTGCTCTCCTACCACTGACCCGAACTCCGCCTTTGTCCCCACCCACTCTGCAAAGGGAGATTCTGAGCAGGGCAAAGGACTTGTGGACAAAGGACAAGGGGCAGTACATCATCTATCAACATCCAATCTTCAGCCTGCCTCCTCTCCCCCGGCTTCCTCCTACAGACATTCAGGGCTGGCCGCTATGGAGGGACAGCGCTCTCCATCTCCACAGTTTTCCCCACAGAGACTCAGTGACAAGCCTCCAGTCTCTCTACAGGATGAAGACTCAAACagTATGGAGCATGTGATAGAAAACCAACATTCTGCAGTGAAGAAAGTGCCCATCAGGATAGTCCACTCAGAGGAAGTCACAGAGAAGGAGAAGTGTCAATATTTGCAGCACAGTGACCCCCTTGCTGTTGAAGCCGAGGGTCCTGGTGTAACCCTGCTCGGCAGTCTGGGAGCTGCAGGGCAGGACTCAGTCTTCTGTGCATTCACTCGGCAGAGGGAGGCCAACAGCACGCCGGCCActcagacagacccagagcCTAAGAGAGATGCGTACATGACCACTGTTGGAGATCACATCAACTCTAAGAGTCAGCAGCCACCGCAGCCCACAGACGAGCCCTGCAGCAACGGGGCGACTGTAACCGCGGGGCTGTCGGAGGATcagaagagagaggagctgGCCAGGGACATCATGGGCAAGGATAAAACACTAGCTGATATTTTGGACCAGAGCAAGATGAAGACCACCATGGACCTGATGGAGGGTCTCTTCCCTCAGGGGGAGCAGCTGTTGGAAGGAGCTCACCAGCGCAGGAAGATGCCCCTGAAACAGCCAGCCAGCCGGCCTGCTGACGACAGGGAAAAGGAGGACAGCATGGCAGCAGCTGTCACCATGGTGACCAGCTCGACATATTACAGCACATCTGCTCCCAAAGCTGAGCTCCTTAATAAGATGAAGGACATGCAGGaacaggagcaggaggaggaagactCTGAAGACGAACTGGACATTGATCTGGCCAACAAGAAGCAAGAGCTGATCGACAGCCTGAGCAAGAAGCTCCAGGTGTTGCGTGAGGCCCGGGAGAGTCTTCAGGAGGACGTCTTAGACAACAACGCTCTGGGAGAAGAGGTGGAGGCCCGAGTCCAGCAGGTCTGCAAACCCAACGAGCTGGACAAGTTCCGGATGTTTGTCGGGGACCTGGACAAGGTGGTGAGCCTGCTGCTATCCCTGTCGGGCCGCCTGGCCCGAGTGGAGAACGCCCTCAACAGTCTGGAGGAGGACGCTACTGCTGAGGAGAGGCGTACGTTGATGGAGAAGAGGAAGCTGTTGATACGACAGCATGAGGATGCCAAGGAGCTAAAGGAGAACCTGGACCGTCGTGAACGCCTGGTTTATGACATCCTGGCCCATCACCTGCCGGAGGACAGCCTCACGGACTACGAGCACTTTGTCAAGATGAAGTCTGCGCTCATCATCGAGCAGCGCAAGCTGGAGGATAAAATCAAACTGGGCGAGGAGCAGCTCAAGTGTCTGACGGACAGTCTGCCCATAGAGCAGAGGCTGGCCTTGTGAACAAGCTGGACACTTCATGAGAAAGACTTGTTGCTCCAGGTTGCGGTTGAGCACCGTGTCcaacagagggagacagagatgaGGAATCTGCAGAGACAAACGGCCATTTTTCCAGTTCTCAACTAGACTGCCATAACACCACTCGGGCAGACAGCATCCAGAAGTCACTCCCTTTGTGAAAGATGCTGCCTCAACCAACCACTGTTTCTAATGtctttcatgacatttttttgctttgtttttattttcatgtttttattttttgtttttttagtaatTTATTGTAGCCTTTTGAATCTGCGCAGGAGGGGACAGTATTTTATCTTCAACTGATTTGAGCAGCCATTCTACCTGATGTGTGTTACACGCTGAGTAACTAGGAGTATTTATCATGTTTAAATAATTTCACACCCCAAAACCCTTTTCACTCAACCCATCAGATCTGGCCGACTATTTcagtacacacacagtttttgtATAAACTAGTGGCCTTTtactaagagagagagagagaatataaatATACTGGTCATTGTAACGAGCACTTGTTCGACTTCACCAACAGAAGAACAGTAGCACTTCACATCCAGACTTTTAACTCGAGTGAAATCCACATTGGAAGTGCCTCGGGGAGTAGTCACCCATGTCACTGCGAGCACTGTTGGCTCTTTTCATCCACTTCTGCATGTTGCTGCTCTGTTTTATTGACAGCCAGAAAAGAAAGGACTTGTTTAGATTATGATTTTGCCACATATAAGTTGACCAagtgtttctgtattttgtctTATTACTTCACTGTGTTTCGTTATTCACGGTGCAGATGTTGAATGCCTACCACAGTTGTTACTTTTTCTAGATAAATTTCaacactaaaaaaagaaattgttcagGTCGATCATTTTGCAACCAAATATGGAACGGAATCATTCCAAAGCATTTTGACCAGCTTGAAGGATTGAATCGGTCTCCCAAAGGTAAACCCTATTGGACGATGTTTGTTCTGCACATTTGAGTATGTTACGGTTTCACACGCTTCATGCACTGCTACAGCCTGACTCTTAACACTTTACCAGCTGTGCTCCTTTGTATCAAATAAAGAGTCTGCTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136796 lncRNA upstream 59658 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA upstream 59966 39739347 ~ 39739963 (+) False LOC120565298
TU136732 lncRNA upstream 119403 39680078 ~ 39680526 (+) True G101519
TU136719 lncRNA upstream 233974 39564141 ~ 39565955 (+) False reps2
TU136689 lncRNA upstream 361864 39437654 ~ 39438065 (+) True G101484
TU136817 lncRNA downstream 54940 39871656 ~ 39872173 (+) True G101579
TU136839 lncRNA downstream 88320 39905036 ~ 39908510 (+) True G101600
TU136956 lncRNA downstream 167754 39984470 ~ 40018693 (+) True G101666
TU136964 lncRNA downstream 184189 40000905 ~ 40003839 (+) True G101674
XR_005640213.1 lncRNA downstream 227466 40044182 ~ 40045506 (+) True LOC120565265
XM_039810913.1 mRNA upstream 33750 39747748 ~ 39766179 (+) False LOC120565276
XM_039810914.1 mRNA upstream 33750 39747748 ~ 39766179 (+) False LOC120565276
XM_039810918.1 mRNA upstream 34145 39747748 ~ 39765784 (+) False LOC120565276
XM_039810920.1 mRNA upstream 34145 39747748 ~ 39765784 (+) False LOC120565276
XM_039810917.1 mRNA upstream 34224 39747748 ~ 39765705 (+) False LOC120565276
XM_039810935.1 mRNA downstream 112 39816828 ~ 39823367 (+) True cldn34a
XM_039810936.1 mRNA downstream 112 39816828 ~ 39823367 (+) False cldn34a
XM_039810939.1 mRNA downstream 12240 39828956 ~ 39863261 (+) False wwc3
XM_039810938.1 mRNA downstream 12241 39828957 ~ 39863261 (+) True wwc3
XM_039810940.1 mRNA downstream 26419 39843135 ~ 39863261 (+) False wwc3
TU136718 other upstream 233974 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 335479 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 919324 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2309857 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2667624 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 698377 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1408375 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1408918 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1635958 41452674 ~ 41453306 (+) True G102165

Expression Profile