RNA id: XM_039810945.1


Basic Information

Item Value
RNA id XM_039810945.1
length 3795
RNA type mRNA
GC content 0.57
exon number 11
gene id LOC120565286
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25096838 ~ 25178753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagagagagagagagagagagagagagagagagagagagagacagagaggcagtgAGACGCATGGGATGCTGATGACTGATCCTCACTGAGATGATGCTATCGATCAGGCTTGCGGATGCTCTCCACTTCACTTTGAAAAACATGCTGATGTGCGCAATTCGACTTTTTTTCTGTTCCTCATCGGCTAATTGAATAAGGTAATGTGAGCAGCAGAGCCGCACACTGCATGGGAAAGCCGAGTCATCGATGCAGAACCCCTCAGCGCTGTTCGGGATGGTCAGCCACTGTCAGACCCCCACTTTTACAGACTTCACCGGCTTGTCGCTCTCCGTGTACGGCAGCAAGGCGGACATCTGTACGCGGCGGGCCGGGAGCGCTGGTTTTGGATCGCAGATTTGCCGGACTTCCCATGACACCCTGAGTCAAATGAACTGCGCCAGCCCAAAGAGTCTCGGCGCATCCGAAGAAAAGGCGCATCTGGCAGCCAAAGCTCCGCGCTCGTGCCTCTCTCTTCCACCCGTGCAAGTGAACGGTGCCTACTGCTCAGAGAAGGATTTAGACATTGAGCTAGGGGACGCTGAGGGCACCCTGATGCGATGTGGGCAGAGCCTGCCACTGCTGGTGGGGGGTCATTTAGGGGGGCTTTATTCCCAGAGCCTCCACTGCGACAGACCTACACCCGACCTCATTCTGCAGGACGGCCCTCACCAAGACACCAGGTCCTCCTCTGCCTTCCAGAGGACCCTGCCGGGGGCCTCACCCAGCCTGGGCAGCGGCAGTGCCAATGCGGCTCGCTCCTCTCTCCCTTACCCAATCAAACAGGAGAGCTCAATGGGCTACAAGATCTCCAACACAGCGTCCGGGGGCCACAGCACGTCTCAGGCCGGGTTTCAAAACTGTAGGGCAGGCCAAGTCTTGGGGATGACGAGGGACGAGATAGTTGGAGCGCCTCACGTTAGCAACAGCGGTAGTGGCGTATGCACATTGAGCGGTGTAGGTAGTGCTGTGTCGGAGGACACAGTGCAACCGTTTAATAATGAAGATGGCTCCTCCCCGCTGGCTTTGTCCCCAACTGGCTCCCGTCATTCAGCGCGGCTGCTCAGTGCTAGCAGTCTGAGGAGACGCTGCCTGTCCCTGGCCTCACAGTCCACTGCCACTGGCAGCGTCGCTGCCACAGGTTCCCCATCGGCTACCGGCGCTGCTTCCGAGGAGATCAATATCACCGCCATCATCTGCTCCTCCTCCCAGATGTCGATGGTTGCCTGCGTCAACGGTTTCCGCACTAACCTCTCGCCCAGCCACGCCAGCAGTGCCGGCTtctcatcctcttcctcctcctcttctacaTCCCCACCCTCTAACTCCTGCTCACGGGAAGCCCCCCAGAGGCCCCCACCTCGCGGCAGCCCCCAGCAGGCCACGCTACAGGAGAGCTGTCAGCTATCCTCACCTGCCACCTGCCTGCTgtccctttcctcctcctcctcctcctcctcatcctcctcttcagtGTCATCAGTGGAGCCGGAGCAGGGCCAAGGGCAGAGCCAGGGGCTGTGTGAGGAGCGGGGCTCCATGCTGCAGGGGCGTGGGGCTGGAGGAACAGCCGGGGGAGgtgtgggaggaggaggaggaggaggctcgGACGGGTTGGGGCTACTGATGAGCGGGGCCCTGATGTCTGGGATGCTGCATTCAGGGCCTGAAGCCGGGGCGATCCTGGATGGGGGCCAAAGATCAGGGGCTGCCCTCAAACAGGAGCCCCTGGATGATTTTTCTCCCAGCGAAGACGAACTCTTTCAGCACCACTATCATCATCACCAGCACTTGAGTGGTCGTAGCGGGCACCTTTGTCAGCCCCACCACCCCTCTCGCCCTGCTATGCCTCCGCCCTACCACCTACACCAATACGTGGGGCCCAGTCCTGGGGGCCTGCTGCACCACCAAAACCAGCAAACAGCACCATCCTCTTCCCTGGGACTCAAACCGACCTCTGGAGGCCCTCCTGGGTCTCACTCAGCCCCAGAGCGGGAAGAAGTCGGAGGAGCGCTGGTCGATAAGCAGGTGTGTCGCTGgattgactgcagtgctgcgtaCGAGCAGCAGGAGGAGCTTGTGAGGCACATTGAGAAGGTCCACATCGACCAGCGCAAAGGTGAGGACTTCACCTGTTTCTGGGCCGGCTGCATTCGCCGCTACAAGCCTTTCAACGCCCGCTACAAGCTGCTCATTCACATGAGAGTCCACTCCGGAGAGAAACCTAACAAGTGTATGTTTGAGAGTTGTAACAAAGCGTTTTCACGTCTGGAGAACCTGAAGATCCACCTGAGGagccacacaggagagaagccgtaccTGTGCCAGCACCCAGGCTGCCAGAAAGCTTTCAGCAATTCCAGCGATCGCGCCAAGCATCAGCGCACTCACCTGGACACGAAGCCGTACGCGTGTCAGATCCCCGGCTGTACCAAGCGCTACACAGATCCCAGCTCCCTACGCAAACATGTAAAGATCCACTCGGCCAAAGAGCAACAGCTTCGGCCCTGTCCTCACCTGGAGCAGGACGTCCTGAGTGACTGTCTGTCCATTCAGCACCTCCAGAGCTCCACCTCCTCGCAGCATCTCTACAACGGCAAAGATGGCCGTTCTCCTGGACTGGGCCAAGACATCTTCGCAGGCCTGTACCCTGGCTCCAGCACCCCCCATCACAGTGCCCCAGTGGAGCTCCTCTCCCCTACCCCCAACCCCACCTCCGTCTCCACCACGGACCTGCCCTCCCGACAACACAGACTGGACCGGGACCTTGGCAGCCCTCATCACCTGTCCCCACTGGCTGCCATGGACGGCACAAGAGACGGGGTGTCGGGTCCCCTCCTGTCTCCAGGCATGAAGGGAACAGGGACAccgccacctcctcctcctctggagAAACAGCATGTCCACCCTCACCACAAGCCCTACTCTCACTATCACCACCATCAGTCTGCCAACGACGAATACCAAGGCAGCTTTCAGAGCTGCTTCCACTTCGGAGACTCTTACAGGATGGAGCAGACGGTCGGCGGTGTCCACGTCCCAGGAGATTCTCATGCCTACGCTTCCCACCAGCACAACGGCTTCCACATGTCAACTAGCAGCACTGGCACTGCAGGCTTCAACCTGACCCAGGAGCTTCAAGGTGGCGCAGGGTGCCAGTTCTCCCCGAGCCCAGAGGAGAGCATTTTCTTCCAGGTGGGCAACTTCGACCGCAGCCTGAGCCACATGTCCTCCGTCTACACGGAGACATAGAGCAACACTGGAGCAGGGTACGCTTCACCACATCTACTCTGCAGTCCTTCCACACCCATCTGTTCACACTTGGATcccctctttgcttttttttttttttttttttcatcatacacGATATGGGTCTAATAGGTCAAATAATTTACATCTTATTCTGACCTACTTTGCTGCCAGATGGATGTGAAACCAGCGAGATGAAACACACGTATACTACTTATACATGACACCATCTGAATGGTCAAGAGATGCAAATTACACTAATAGTCAAAAGTAGGTTCCCAACCTTTAAGGCTTCTGAGCCATTTCAACGAAGATGTCGTCAGCAGGTTGCATATGTCTTCCAGTTGTGACTAGTTTAACCAAAAAGTAATTCCCTTGTCTTTTGTGTATCATTTCCACGAGTAAAATGATCCAGTAATTCATAAGAAAATAGACAAAGATCTGGTTCTTGCTCTTCTGATTTTTgatcactttaaataaaaggagTGACACATAATTAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132293 lncRNA upstream 206462 24885420 ~ 24890376 (+) True G98033
TU132274 lncRNA upstream 221172 24837613 ~ 24875666 (+) True G98021
TU132269 lncRNA upstream 261321 24833437 ~ 24835517 (+) False G98019
TU132407 lncRNA downstream 12311 25191064 ~ 25191838 (+) True G98128
TU132401 lncRNA downstream 50629 25229382 ~ 25232400 (+) True G98123
TU132450 lncRNA downstream 74720 25253473 ~ 25258486 (+) True G98163
TU132465 lncRNA downstream 244893 25423646 ~ 25479232 (+) True G98176
TU132466 lncRNA downstream 300595 25479348 ~ 25479604 (+) True G98177
XM_039812027.1 mRNA upstream 12916 25069211 ~ 25083922 (+) True ssbp3b
XM_039812028.1 mRNA upstream 12916 25069211 ~ 25083922 (+) False ssbp3b
XM_039811421.1 mRNA upstream 67622 25009864 ~ 25029216 (+) False erich3
XM_039811420.1 mRNA upstream 67622 25009943 ~ 25029216 (+) True erich3
XM_039810868.1 mRNA upstream 108770 24947602 ~ 24988068 (+) True slc44a5b
XM_039812468.1 mRNA downstream 40729 25219482 ~ 25228281 (+) True mpnd
XM_039810770.1 mRNA downstream 265646 25444399 ~ 25457159 (+) False plin3
XM_039810767.1 mRNA downstream 265647 25444400 ~ 25457159 (+) False plin3
XM_039810768.1 mRNA downstream 265650 25444403 ~ 25457159 (+) False plin3
XM_039810769.1 mRNA downstream 269681 25448434 ~ 25457159 (+) True plin3
TU132285 other upstream 222964 24852301 ~ 24873874 (+) False elovl1b
TU132286 other upstream 222964 24868017 ~ 24873874 (+) False elovl1b
TU132257 other upstream 312957 24781918 ~ 24783881 (+) True G98012
TU131697 other upstream 1619020 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 1774929 23321522 ~ 23321909 (+) False pole4
TU132486 other downstream 354072 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 551505 25730258 ~ 25732177 (+) False slc35a3a
XR_005640198.1 other downstream 812753 25991506 ~ 26019371 (+) False dot1l
TU132947 other downstream 1613934 26792687 ~ 26795739 (+) False micos13
XR_005640192.1 other downstream 2849219 28027972 ~ 28084387 (+) False pip5k1ca

Expression Profile