RNA id: XM_039810960.1


Basic Information

Item Value
RNA id XM_039810960.1
length 1564
RNA type mRNA
GC content 0.50
exon number 9
gene id calr
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22584206 ~ 22589319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCAGACATCTGTTCTGAGCCGAAAAGACCAGTGGCACCGTCTTTGACTTTAACATTACTGTATGATAGACTGGACCGACTAACAACGCCTGCTGTACGGTGTACACAGATTATATAGACTTATTTGTAATTATAGTCGTTTTTTTATTTGGCGGGGTGCTTCAGTTTGTCACAATGACAACCCTGTCGCTGCTTTTGATGGCCGTGTCGGCAGCATCTGTGCTGGCTGAGTCCACTGTCTTTTTTCGAGAGCAATTTGAAGATGGGGATGCCTGGAAAAGTCGCTGGGTGGAATCCAAGCACAAGTCCGACTACGGCAACTTGGTCCTGAGTGCAGGGAAGTTCTATGGCGATGCAGAGAAAGACAAAGGTCTGCAGACGAGCCAGGACGCACGCTTCTACGCCTCGTCATCCCGTTTTGATGACTTCAGCAACCAGGGCCAGCCTCTGGTTATCCAGTTCACTGTGAAACATGAGCAGAGCATTGACTGTGGGGGAGGCTACGTTAAACTGTTTCCCTCTGGCCTCAACCAGGAGGACATGCACGGAGACTCGGTCTACAACATCATGTTCGGTCCTGACATTTGTGGCCCTGGCACAAAGAAGGTTCATGTCATATTCAACTACAAAGGCAAGAACCATCTGATTAACAAGGACATCAGATGCAAGGATGATGAGTACTCCCACTTGTACACACTGATAGTCAACCCTGAAAACACTTACGAGGTCAAGATCGACAATAAGAAGGTCGAGTCTGGCAATCTGGAGGATGACTGGGACTTCCTGCCTCCCAAAAAGATTAAGGACCCTGAAGCCAAAAAGCCAGAGGACTGGGATGACCGGGAGAAGATTCCCGACCCCGACGATAATAAACCAGAGGACTGGGACAAGGCTGAGAACATCCCAGATCCTGATGCTAAAAAGCCTGATGACTGGGATGAAGAGATGGACGGAGAGTGGGAGCCTCCTATGGTCGCTAACCCTGAGTACAAGGGTGAGTGGAAACCCAGAGAGATCGACAATCCTGCCTACAAGGGCATATGGATCCACCCTGAGATTGACAACCCGGAGTACACAGCCGACTCTGAGATCTATAAATACGACAGCTTCGGTGTGATTGGACTCGACTTGTGGCAGGTCAAGTCTGGTACCATCTTTGATAACTTCCTCATCGCCAACAACCCAAAACTGGCAGAGGAAGTAGGCAACGACACATGGGGTAAAACTAAGGACGCAGAGAAGAAGATGAAGGAAAGccaagaagaggaggagagaaagaaacggGAGGAAGATGATCAGCAGAGGAGAGACGAGGCAAAGGAggaagacgaggaggaggaggaggagaaagatgaGGAGCaagatgaggaggaagatgaagaagaagaggaggaggaggagggggaagagcaggaggaggaagaagaggacgaTGAAGGCACAGACTCTAAACTCAAGGATGAGTTATAAACTCTGTGCAGGAACTGACTGTCTGTGTCAATGAGCCAGTGGAACGAGGCTGGACACTGATGAGATGATAGACCCTCATGACTGACACCCTGGG

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131429 lncRNA upstream 7658 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA upstream 7658 22571795 ~ 22576548 (+) True LOC120566218
TU131333 lncRNA upstream 261351 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 267848 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 409813 22158057 ~ 22174393 (+) True G97297
TU131439 lncRNA downstream 5177 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 5468 22594787 ~ 22595277 (+) True G97410
TU131444 lncRNA downstream 68180 22657499 ~ 22676178 (+) True rnf11b
TU131445 lncRNA downstream 68180 22657499 ~ 22674237 (+) False rnf11b
XR_005640278.1 lncRNA downstream 191288 22780607 ~ 22800145 (+) True LOC120565733
XM_039810961.1 mRNA upstream 1551 22577197 ~ 22582655 (+) True tor3a
XM_039812096.1 mRNA upstream 13906 22530087 ~ 22570300 (+) False osbpl9
XM_039812097.1 mRNA upstream 13906 22530087 ~ 22570300 (+) False osbpl9
XM_039812099.1 mRNA upstream 13906 22548893 ~ 22570300 (+) True osbpl9
XM_039812098.1 mRNA upstream 13906 22553561 ~ 22570300 (+) False osbpl9
XM_039812081.1 mRNA downstream 2324 22591643 ~ 22623535 (+) True eps15
XM_039812083.1 mRNA downstream 2324 22591643 ~ 22623535 (+) False eps15
XM_039812082.1 mRNA downstream 2324 22591643 ~ 22623535 (+) False eps15
XM_039812084.1 mRNA downstream 35766 22625085 ~ 22657026 (+) True ttc39a
XM_039812085.1 mRNA downstream 43315 22632634 ~ 22657026 (+) False ttc39a
XR_005640351.1 other upstream 8004 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 9058 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 9282 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 9534 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 10514 22573630 ~ 22573692 (+) True LOC120566226
TU131620 other downstream 732203 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 885463 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 2192599 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 2262982 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 2278698 24868017 ~ 24873874 (+) False elovl1b

Expression Profile