RNA id: XM_039810961.1


Basic Information

Item Value
RNA id XM_039810961.1
length 2137
RNA type mRNA
GC content 0.48
exon number 6
gene id tor3a
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22577197 ~ 22582655 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATGCGCCGTGGACAActggagggggggtggggaacTGCCCCTCCTTCGGTACCATGGCGGAGAGAGGTAAACATTCCACAGTGCAGGCCGCCCGCTAACGGCCGGGTTTAGATAAACCGGCAAAGAGAACCGGGACGCGGGGTTCAGTCTAATTTCGGCCGCCTCGGACCAGCCTCTTCAATGTTTGTGCGGTGGTTGCTGCCTGTGCTCTGGGCTCTGTCCGCAGAGGCCGACTTCTTCCAGTTCGACAgcatttccaatgtttccacttactattttaattacatttattgcAATATATGGGAAGGGGAGTGTCAACCCAACCAAGACGATGCTACACAACAAGTTCCTACCAGGGACCTTTGGGCAGGTTTTCCTCAGGACTACATCAGCCTGCTGCATCAGTGGTACTGTAGCATGGGCCAGTGCTGTGAATCTGGAGACTGCAGGATAACCAACAACATCACAGGTCTGGCGAGGGACCTTCAGACAAAGCTCCACGGGCAGCACCTGGCTCAGTCTGTGGTTCTGAAAGCCATCCAGGGTTTCATCAACAACCCAGAGTCCAACAAGCCGCTGACGCTCTCCTTCCACGGCTGGTCCGGCACCGGCAAGAACTTTGTGGCCCGGATAATCGCTGATAACCTGTACCGTGACGGAGTCAAGAGTGAGTGTGTCAGACTGTTCATCGCCCCGTTCCACTTCCCACATGCCAGACTGGTGGACACGTACAAGGGCCAGCTGAGAGAGGCGATCCGGGACATGGTGCTGCGCTGCCCTCAGACTCTGTTCATCTTCGACGAGGCTGAGAAGCTTCACCCCGGACTCATCGATGCCATCAAACCCTACATGGATCACTATGACAACGTAGATGGCGTAAGCTACCGCACAGccatcttcctcttcctcagTAATATTGGTGGAGCAACGATCAATGATGTAGCGCTGGACTTCTGGCACTCCGGTCAAAATCGAGAGGACATCGGTATGGAAGACCTGGAGCATCGTCTGCGAGCTGAAACTATGGAGTCTCATGGTGGGTTTGCTCAGAGTGAGCTGATGTCTGGCCACTTGATCGACTTCTTTGTGCCATTTCTGCCTCTGGAGTACCGCCATGTCAAGCTCTGTGCACGGGACGCCTATGCAGCACGAGGTCTCGAGACGGATGAAGCTACGCTGGATGAAGTGGCCAAGGCGATGCTGTATGTCCCTAAAGAGGAGAGACTGTTCTCAGCCCAGGGATGCAAGTCCATACCCCAGCGGATCAACTTCTTTCTCCCCtagaaggagagacagacagagagacctGGAGGAGGTGTGAGATTGCTTCACCAGCCCATCTGCATacagagccacagaggagaTGTCTGCTCTGCTCTACGTACTCTCCCTCCACAGGTACAAAACATGTCTGTCCAGGTCCCTCGGAGAAGGTCAGACAGCAGGGCTGATCCAGTATTGGAGGGGAAAGCAGCGCAACCCACCCTGCAGACATGAGCAGTGCCAGACAGTTATCATGTGCAGTGTGGCTGCTCTTCTTCACCTGCCAGGTTTAAATCCTCACAGTATCAAGAGGGAGAATTAGACAGTGGCTGCAGTGTATGTCATAGAGAGATACTAATACATTCTTATTGTCACTGTTTAAGTCTGTTCCCCTTTGCCAAAGTTTTAGTTGcgctgtttttaaagtttaggTAAATTCATACTTGTGTTTGCATGTCAGACATTGTGCTGCACTGATTATTTATTGACATCATTTGTGCCATATTTGAGCAGTTTACTGTACCAGATTATTTTTTGTGGAGTTGTTTGAATATGAATTTGTTGGCACTGTAAGGTATTAGTAAATAATAAATGCCACTGTAGTGTGAAAAGAATGGTGTGTGTAACTGCTAAGGTACACGGTACTGCAAATGTTACTTGAAATTGTTGGAATTTGTGTCAGAAGCAATTTAATCTATTTGaaagttagatttttgtgtgaaaatgtgtttaataacagtgcttttaatttttgtttattGTAAGTCATCTTATTGTTTCACATGAACCTAATACATGTCTTAGTGTTGTCATCATTACATAATATACTACTGTTAATTTGAgtcatagttaaaaaaaaaaaattattctga

Function

GO:

id name namespace
GO:0051085 chaperone cofactor-dependent protein refolding biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K23000 TOR3A, ADIR; torsin-3A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131429 lncRNA upstream 649 22571754 ~ 22576548 (+) False LOC120566218
TU131431 lncRNA upstream 649 22571795 ~ 22576548 (+) True LOC120566218
TU131333 lncRNA upstream 254342 22322492 ~ 22322855 (+) True G97338
TU131330 lncRNA upstream 260839 22313648 ~ 22316358 (+) True G97335
TU131289 lncRNA upstream 402804 22158057 ~ 22174393 (+) True G97297
TU131439 lncRNA downstream 11841 22594496 ~ 22595277 (+) False G97410
TU131438 lncRNA downstream 12132 22594787 ~ 22595277 (+) True G97410
TU131444 lncRNA downstream 74844 22657499 ~ 22676178 (+) True rnf11b
TU131445 lncRNA downstream 74844 22657499 ~ 22674237 (+) False rnf11b
XR_005640278.1 lncRNA downstream 197952 22780607 ~ 22800145 (+) True LOC120565733
XM_039812096.1 mRNA upstream 6897 22530087 ~ 22570300 (+) False osbpl9
XM_039812097.1 mRNA upstream 6897 22530087 ~ 22570300 (+) False osbpl9
XM_039812099.1 mRNA upstream 6897 22548893 ~ 22570300 (+) True osbpl9
XM_039812098.1 mRNA upstream 6897 22553561 ~ 22570300 (+) False osbpl9
XM_039812091.1 mRNA upstream 48188 22501548 ~ 22529009 (+) True abl2
XM_039810960.1 mRNA downstream 1551 22584206 ~ 22589319 (+) True calr
XM_039812081.1 mRNA downstream 8988 22591643 ~ 22623535 (+) True eps15
XM_039812083.1 mRNA downstream 8988 22591643 ~ 22623535 (+) False eps15
XM_039812082.1 mRNA downstream 8988 22591643 ~ 22623535 (+) False eps15
XM_039812084.1 mRNA downstream 42430 22625085 ~ 22657026 (+) True ttc39a
XR_005640351.1 other upstream 995 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 2049 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 2273 22574843 ~ 22574924 (+) True LOC120566221
XR_005640359.1 other upstream 2525 22574591 ~ 22574672 (+) True LOC120566225
XR_005640360.1 other upstream 3505 22573630 ~ 22573692 (+) True LOC120566226
TU131620 other downstream 738867 23321522 ~ 23321909 (+) False pole4
TU131697 other downstream 892127 23474782 ~ 23477818 (+) True G97596
TU132257 other downstream 2199263 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 2269646 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 2285362 24868017 ~ 24873874 (+) False elovl1b

Expression Profile