RNA id: XM_039810974.1


Basic Information

Item Value
RNA id XM_039810974.1
length 3337
RNA type mRNA
GC content 0.52
exon number 17
gene id slc9a7
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40006247 ~ 40036320 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTAAAAGGTTGAACTCGCCAGGCTACGGTCCACGAACACTGGATTGTACTCCCAGTCGGCTCAGCTGTGCGAATACTACCTTCCAGCAGTGACATGGCATAGAGGCGGTGTgctgtcagcagcagcagcagcagcagcatcatccTGCACCATGGACGCTCTCCGACAACCGAAGCGGAGCGGAGCCTTCGCCGCACTGGACACCATGATGCCCGTCGTTTGGATATTACTGAGCGCGGTGTCAGGACTGAAGGCGGAGGATGGCGGAATGGAAGAGCTTACCACCGAGAAGGAGGCTGAGGAAAGTCACCGACAGGACAGCGTTAATTTGCTGACATTCATTTTACTGCTGACCTTAACGATTCTCACCATATGGCTCTTTAAGCACAGACGGGTCCGTTTCCTTCACGAAACCGGACTGGCAATGATTTACGGTTTGCTGGTAGGTGTGATTCTGCGGTATGGCATCCCTGCCACCAGCTACCACAACAAGACACCCCCAAGCTGCTCACTGAAGGAAGGACCTGTCAGCACCCTGCTGCTCAATGTCAGCGGCAAGTTCTTTGAGTACACCCTCAAAGGCGAAATCAATTCCAGAGAGATTCATAATGTGGAGCAGAATGATATGCTGCGCAAGGTGACATTTGACCCTGAAGTATTCTTCAACATATTGCTGCCTCCAATTATTTTCCACGCTGGGTACAGTCTAAAGAAGaGACACTTTTTCAGGAATCTGGGCTCCATCATAACCTATGCGTTTCTTGGGACTGCCATCTCATGTTTTGTTATTGGGAATCTGATGTACGGTGTGGTCAAACTGATGCAAGTGGTCGGACAGCTAACTGACAAGTTCTACTACACCGACTGTCTTTTCTTTGGTGCCATCATCTCGGCCACAGATCCAGTGACGGTGTTGGCCATCTTCAATGAGCTCCACGCAGATGGGGATCTGTACGCTCTGCTGTTTGGAGAAAGTGTTATGAATGACGCAGTGGCCATTGTGCTTTCCTCGTCTATTGTGGCCTACCAGCCCAGtggagcaaacacacacatgtttgATGCCTCAGCCTTCTTCAAGTCAGTGGGGGTTTTCCTGGGGATTTTCAGCGGCTCCTTTGTGATGGGTGCAGCCACAGGAGTCGTCACCGCTCTCGTCACCAAGTTCACCAAGCTGCACTGTTTCCCGTTGCTGGAGACGGCCCTCTTCTTCCTCATGTCTTGGAGCACCTTCCTGCTAGCCGAAGCCTGCGGCTTCACAGgcGTCGTGGCCGTGCTGTTCTGTGGCATCACGCAGGCTCACTACACCTACAACAACCTCTCTGCGGAGTCCACAATACGCACCAAGCAGCTCTTCGAGGTCCTTCACTTCCTGGCTGAGAACTTCATCTTCTCCTACATGGGGTTGGCTCTGTTCACCTTCCAGAATCACATTTTCAGCCCTATTTTCATCATAGGGGCTTTTCTTGCCATATTCATTGGAAGAGCTTTCAACATTTACCCGCTGTCCTTCCTGCTCAACCTCGGCAGAAGGCACAAGATCAAAGGAAACTTCCAGCATATGATGATGTTTGCAGGTCTACGTGGAGCGATGGCGTTCGCTTTGGCCATCCGGGACACGGCCACCTACGCCCGCCAGATGATGTTCACCACCACGCTGCTCATTGTCTTCTTCACTGTCTGGGTGTTTGGCGGTGGGACGACACCTATGCTGTCCTGGCTACACATCAGCTTTGCATTGCAGGAAGAGCGACGCCAGCATGGAAAGTGGCAGTACTTCAGTGTTGGTGTAGACCCGGATCAAGATGCGGGGCCATGTGGAGACAGCTTCCAGGTCTTACAGGGGGATGGCCCCCAGGCTGAAGGACAAAGTAAAACCAAACAGGAGAGTGCTTGGCTCTTCAGACTGTGGTACACCTTTGATCACAATTATCTGAAGCCCATTCTGACACACAGCGGCCCGCCTCTCACCTCCACTCTGCCCGCCTACTGTGGGCCGCTGGCGAGCTGTCTGACCAGCCCCCAGGCATATGAGAACCACGAGCAGCTGAGGGACCACGACTCTGACCTCCGTAACGACAGCGACCTGACGTTCACCTTCGGCGACACTGCCATCACAGCCAACGGGGCGTCGGGCGGTGGCGCCGACGCGGCCGGAGGCTCGGGCTGGAGCGCCAACGGCAAAAGGAGCGGCAGCACCTCCGAGGAGGCGCTGGAGCGCGAGCTGGACTCCCGCGAGCAGGAGCTGCTGAGCCGCGGCACGCGCCTGGTTTTCCCCATCGAGGATCACATCTGACCCTCGCCCTCCTTTTGCCTGCACCGCCAACCTCCCTGACCTGACCCCCAGACCACCTCGCCCTCAGCCCCCCACCAACACATCTTGCAGGCAGAACGTCCAGTCCTTCAGAGATAAGACCGAGAGGACATGTGGGAATAGATTAGAGGGGGAGGGTTCCCTCCAGGCCCGGGAGCAGAGCTCAAGGAGCATTTCATCCTCATTACAGAgctggagttttttttgttttgttttttatctccAGAAGACATGTGTCCTCTAGAGCGTCAGGAGATCGTGCTGTTATACTGCGATTTTACTGATGGTTTCCGTAAACAGGAGGGACACCTCTATGCAGGATGtgaggacaaaataaaatatccacATATGAGATTCAGTCtgcttttttgaaaatgtttagcTGGAgtggaaaagaagaagagaaaaccaCCACACAGCTGAGAAAAGGCTCTCTCTGCAATCACACCCCATCTACATGTAGATTCAGAAATGAGGCCACACTAACCAAACTTGAATAGTTTATAGATCAAACCGAGTTCTCTGGCATATTTGTACCATTCATCTGAAGCTGCTAATAGACCAGTGTTTGGTATGTTTGTGAGGATGTCCTTTGTTTCACACAAACCTATCTGTGTGGAGGAGACTGTGGCATGTGAGAGAGCGGGCCAGTGGATGTGTTCCCCTCTCAGCCTACACAGCCTGTCATGGGCAAAGTAACGGGGGTGAAGAATGTGAGCATGTAAATAGCTACAATGCAGAGCTTTGTTCCTCTCTAGTGGGACCGCTTCTTTCAGTGCATTACATCCCATGACTGTTACAAATGTGTATCGAGTCTTTGAACTGGATCTTTTTCTGTGTGCTGGGCTGGTTTTCATAACAATAACACGAACAAGGAACGCAAGGGTTTTGATGCTAATTGTATTGTTTCTTATGAGATAATGCTGATTTcctaaaactgtaaaaacagaCATGAGATGTGCCCTCTGAGCAATTTCAGCACTGTGAAATAAAGAGCAGGTCTTCATCATAATTTGGAACGCTT

Function

GO: NA

KEGG:

id description
K12041 SLC9A6_7, NHE6_7; solute carrier family 9 (sodium/hydrogen exchanger), member 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136964 lncRNA upstream 2408 40000905 ~ 40003839 (+) True G101674
TU136839 lncRNA upstream 97737 39905036 ~ 39908510 (+) True G101600
TU136817 lncRNA upstream 134074 39871656 ~ 39872173 (+) True G101579
TU136796 lncRNA upstream 265976 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA upstream 266284 39739347 ~ 39739963 (+) False LOC120565298
XR_005640213.1 lncRNA downstream 7862 40044182 ~ 40045506 (+) True LOC120565265
TU136979 lncRNA downstream 93481 40129801 ~ 40133354 (+) True G101687
TU136980 lncRNA downstream 98887 40135207 ~ 40135500 (+) True G101688
TU137096 lncRNA downstream 224043 40260363 ~ 40260609 (+) True G101796
TU137125 lncRNA downstream 450471 40486791 ~ 40487021 (+) True G101823
XM_039812076.1 mRNA upstream 42711 39959058 ~ 39963536 (+) True gtpbp6
XM_039812077.1 mRNA upstream 42711 39959087 ~ 39963536 (+) False gtpbp6
XM_039812224.1 mRNA upstream 51993 39945687 ~ 39954254 (+) True nit2
XM_039810496.1 mRNA upstream 66840 39923558 ~ 39939407 (+) True tbc1d23
XM_039810497.1 mRNA upstream 66840 39923558 ~ 39939407 (+) False tbc1d23
XM_039810895.1 mRNA downstream 15997 40052317 ~ 40069649 (+) True tubgcp5
XM_039810896.1 mRNA downstream 15997 40052317 ~ 40068442 (+) False tubgcp5
XM_039810407.1 mRNA downstream 35722 40072042 ~ 40125946 (+) True cyfip1
XM_039810362.1 mRNA downstream 103113 40139433 ~ 40196566 (+) False herc2
XM_039810366.1 mRNA downstream 103113 40139433 ~ 40196566 (+) False herc2
TU136718 other upstream 440292 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 541797 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 1125642 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2516175 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2873942 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 478773 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1188771 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1189314 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1416354 41452674 ~ 41453306 (+) True G102165

Expression Profile