RNA id: XM_039811020.1


Basic Information

Item Value
RNA id XM_039811020.1
length 5106
RNA type mRNA
GC content 0.45
exon number 6
gene id tle5
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23836670 ~ 23880166 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGTTTCTGTGTGGGGGCGTTCAGCAGCACAGCAGCGTCGCGTCTACCCACAGCTCCAGGAATGGACTGACTTTCTAGCTTCACCACCACTGACAAACCCACTCTGTTTCTTCACGACTCCTCGGATAAACGTTCAGAGTTTAACTCAAGCCTGGGATCATTTTTAATTTGACGTCGATTAGCCGTCTGAGCGACAGCACAGGTTGTCTTTTCACTCGCGCGACTTATTTGTAGCCGCTGGACGAAACTGGATTGAACTTAAACGAACCCGCAGACATTTTGTTATTTCTGAGAATTatagcgttttttttttctctctctctctctctcttacttttTCATCAGTCGCAGCTGGTCGAAGCGAGCGAACTGAAAGCTTTAAAGGACCGCCACAAGGCGAAGGAAGAAACCATTACCCTCTCTGCTCGCCCACTAAATCCAGACACCTCTGTGTTCATATCGTTTTTTAATTTACCACGCGTTAAAGGCGGAAGGCTCGCAACTGCGATGGATCATTTTGACTGACAGCTTCTGAAGAATTAGCTAGCTTAGCCAGTGAGGAACCAGCGCTGGTGGTGGTTTCCTGTTTACAGACGCAGTAAATACGGGCTCGGGACAGGTAACCGTTACAGCTGAATGGTCTTGCATCACCCAGACAAGACAGCGACTGTTTTACCTCGCGAACGACGGCAAAGTGCATCACTTATATTCGGCTTAATTTTGGAGTGGGGGTTGCtggctaccgttagctagctagtcatCCTGCTACCGCTGGACAGCTCCTGTGTACGGcagggctaacgttagctttggaCAAAGGACCAACGCAAGGAAAAATATAAACACAGGGCACTCAGTCGATCGTGTTTGGGAAGGAAAGCAACAAACAAGGAATTGACATGATGTTTCCACAATCAAGACACTCAGCTTCATCACAGCAGCTGAAATTCACAACCTCGGACTCCTGTGACAGGATCAAGGATGAGTTCCAGTTCCTCCAAGCACAATACCACAGTTTGAAGCTTGAGTGTGACAAGTTGGCCAGTGAGAAGTCAGAGATGCAGCGCCATTATATCATGTATTATGAGATGTCCTACGGGCTCAATATTGAGATGCACAAACAGGCTGAGATAGTGAAGAGATTGAACGGGATCTGCGCACAAGTCCTCCCCTACCTGTCTCAGGAGCAGCAGCTCCAGGCTCACCAGCTGTCTCAGCTCCAGGGCCTGGCCCTGCCCATGACCCCCCTGCCGCTGGGCCTGAGCCAGCCAACCCTCCCCGCCGTCACCACCTCCTCCGgcctcttctccctctcctccctgctGGCCTCCCAGGCCCAGCTGGCCAAGGAGGAGAAAGCTTCGCGTGACGGAGTTGACAGCCACCGCGAGGAGGACGGAGACAAGTCTGATTAGATGGTGTCCCCattcagctctgtttttgtCCAGAGACCTGAATCCCCAGATCTGAGCCCCCTTGGTCTACAGCCTCTCCCCTGGTCTCCCTCTCTATGACCTTAGCAACATGGGCTTCGATCCCATCACCACAGCTCCAGCTACAGGCCCCTAGCCAACTCTGGCACCCGCCCCTTATGTCAGACTAGTCCTGAtcgcttcatatttaccatccTTGGGTTGTTTGTTTATTCTCCCTTCTCTTATCACCATCACAGTGTCTCCTGTGTCTTTTCTCCAAatacagtctttttttttgtatgtgattAAGCTTCAgttattttgtttcattttttacaCTTTCTTACTGCTTTCTATTTCTGTTCCTTCCTGCCTTCCTGTCGCTCTGTCTGTCAGTTCttattcctgtttttttttttttccctcaatgCCTCTCTTCCTCCCACTCTGACCCACCTCTTGCCTCTGTTCTACAGTAAGCGTGTCCTTGTTATGCAGGACTGATCCTGAGACTCAACGCACTGTACTGTAGGTGTTAAAACAAGCTAAATGTTAAACACAGGGATTCTTTGGCAAGCTTTAATACTTGTCAGACACAACACAGGATTCCTACAAGCTTCATTTTCCCAAGAAAGAGAAGTGTGGAGAGTGGCAGAGATCAGTAGTGGTGATCGTTTTGGCAGTACAGATTGCATGCATTCATTCCAAGCTACAAGTTGGTTTTGAGTTTAAACGGTGGATTGCTATGGATCAGAGAAGTGTTTAAATAGTGCCCCGACTAAAGAGCGGAACATCCCAACGACACGTCCTAACCATAAACCAGCAGACGTGTTGTATTGAGAAGAAAATTTTAGAGATTTGTGTATACTCCTAAATTTATACTGAGAAAGGAAAAGCACCTTCTTAGAGCAAACTTCTTGCTGAGAGCTGTCAGATTAGAGAACAAACACACCTAACTAAGtaatctcctcctctccccccccttccctccctcccccctccccgttTTGCAATCCTTGCCTGACCCTGTGAGTTACGCTACATAAATCCACCCAGCACCTTAACTGAAAGGCACCATTTTCTTCAGTAGTTAAATAAACAGAGATGTCGCTTGCCCCCCCACCACCTTTTGCATCTTTAATGTGCACTAATATTAGAGCAGGCACCGAGTGGGGAGAGTGTGCATGTTGTGTGTTTGACAGCAGAGGGCAGTGTGTATCTTCCAGAGCAAACAAGGACAGGACAAGTACAGGCTGTGTCACAAGAGGGAATGGCTTATTTATCCACTCTGTGTGTACAAACTTAATATACAGAGACTAGACTGGTGACATTAATCTCTGCATGCAGtcagtcccagtctctgtcaggATCCAGGTCTTGAGAACCATCTCATCTCAGcgtgacacagaaacacaactgGACCCGTGCTTTTGATCCTCTGATTCTCTGTAAATCCTGatttaaatactgtacattttgatTCACTGTACATATCCAGGCCTGTCACATATCCGACTCCCACTACATTACGCAGGCGCTTTAACACCTACGTGCAACGCTTAGTGGGAAGTCTCCACGACCTAACAAAATGATATCGGTGCAGATCACACGGATGAAGCGCAAGCGTTCTCCACAGCAGCTCCGATGAGTAAAAAAAACTCCCCCGCAGCTTCACAGGCCCTGTTTTCAATTAGCTTGTCTCATTAGGCCTCTCGTCAGGTGGAAGTTGGCTGGAACTATGCTGGGAATAATGGGATGTCGCCACACTCTGACTGCGTTTTGAAATCTCAGTGTCAGAATTTTAATAGCTCCCTCAAAAATTCCCCGGTGGCCCAGTGGTTAACACCCGTATCAAATAATCACTACATCCCCAGTTTGATTCTGGAAGTCTGTGcgacacaacaaaaacacaatatagTCCATTTCATTTGGGTTTAATTACTTAACACTGAACGTGAGGCATCCATGTTCACAAGTCAGATATGTTAAAAACTTTCAGAAAAATTCTCCTCAGTCCTACTTACAACAACACTTAACACTATTTACAGGTTGTAAACTGTAAGCCCAATATGACACGAACGCGCCATAACCAGAACAGTGAAACCACTAGCAGTTTGAGGCAGATCCTATGTGTAAACACCTTTTTGTGGCTGGACTATGGACGTGTAGAGGCTTTGACGGGTCTAGTAGCAGCTTATTTATACAAGATGAGATGAAATTGAACATTGACCCCCTCTTTAGCGGCAAACCTACGTTTCTAGGAGAGGTTAGCCTCATTGGTGATCAGACCCACCTGACCGTGGCGCTGTCGATCCACAccgttatttttttatttttatttttattttttggtgcCGGCCTGTGTTTGTGCGAGTGTTAATTTGAAGACAGCGCGTCCATGAAGTTGTTTGATACCAAacccacagacacagagagacacagaacacacacacatgcctttTCTTAACCTCCTCTCTCTGATTTAACGGCTACACTGTAAGAATCAATTGAtgtgaaataaacaatactttgaTTTGGAAAAACACCACTCAAAACGGTATTtggcatgatgatgatgatgataaagcACATTGTATTGTGGAAGTCATTCAGAAAGCAAAAGTATACAAATTGCACGTTATGGCATTCAGAATAAAACCCTTAATGTGTTTAAAAGTTCAGATGACCTACTGTCTGTGACATTGGTGGGTAACTCCTTCGATGATGCCCGTTGTTGTGTATGTGCGTGAACACAAACGAGGTGTGTATAAACAGTTGTACAGGCTGTACATGTTCTTACTACAACTAAAGCTAACATGCTATTCTGCTTGTGAATTAAGCTGGCAGCACATCGTCCTCCCACACGCTGTATGTGTCTGGCTGCATACTATACTCGTCGTAGTGATTGGCAGAGCGTGTAGACaaagcgacacacacacacacacacacaaacgcacacatcaATGCATGTTTGCGGGGAACCCGAGATTGATTTCTTTGTAGTGGagacattttttcaaaagaaTGTTTGGTCCAAACTTTGTGATCAAtgcacttgttttttttgttgttttttttaccctcttctctgtttttaaatattaatcgATATGAACTAGAACGAGAGTTACAAAGCTGACGTTATAAACATACAAATGAAATTCTATGTATTTGTTAAATGTAGTTGGAGGCGCTCGCCTCTGTATACAGTTATACATAGAAAGCTTTATGTGTATATAGCTGCATCTTTTCTTGTCTGTCCTGGATGATTTTTGTGCTATTGTGTTACAAAACTGATGTGACACCAGGGGGGAAACTGCAGTACGTTGACCTTTTGCCCTTTAACCCCTCCCTTCTTTTctgccctcccccccccaccccccttcccCTTCACTCCCACGCCACATCCCACCTTCCCAACTTTTTGCCCCCATAGCGTGAAGCATTGTAAGCGTTTTGAGCTTTGTAaaggtctttttttaaatacttattTTGTGCATAATGTAAAACCTAAAAGTGTGtactttggcaaaaaaaaaaaaaatgttttgtgtctGAAATCATAGCTTCattgaaacaaaaaaaggaactataaaaaagtaaaacaaacatttactataaataatatgaaatgttcTGCAGTAAGGAAGGACTTCTGGTGCCTTACAAATAAAGtcaatcaaatcataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131820 lncRNA upstream 123207 23712097 ~ 23713463 (+) True G97679
TU131819 lncRNA upstream 123207 23713147 ~ 23713463 (+) False G97679
TU131792 lncRNA upstream 131386 23704936 ~ 23705284 (+) True G97657
TU131791 lncRNA upstream 186214 23648343 ~ 23650456 (+) False cdc34a
TU131789 lncRNA upstream 188471 23647873 ~ 23648199 (+) False cdc34a
TU131849 lncRNA downstream 118235 23998401 ~ 24000025 (+) False G97702
TU131850 lncRNA downstream 118235 23998401 ~ 24000222 (+) True G97702
TU131851 lncRNA downstream 118235 23998401 ~ 23999954 (+) False G97702
TU131884 lncRNA downstream 210377 24090543 ~ 24091319 (+) True G97728
TU131961 lncRNA downstream 324199 24204365 ~ 24208101 (+) False cks2
XM_039811186.1 mRNA upstream 1016 23791060 ~ 23835654 (+) True LOC120565386
XM_039811184.1 mRNA upstream 5797 23790086 ~ 23830873 (+) False LOC120565386
XM_039811187.1 mRNA upstream 5797 23791060 ~ 23830873 (+) False LOC120565386
XM_039810215.1 mRNA upstream 170386 23659619 ~ 23666284 (+) True LOC120564946
XM_039810423.1 mRNA upstream 186157 23631119 ~ 23650513 (+) True cdc34a
XM_039810385.1 mRNA downstream 33782 23913948 ~ 23998384 (+) True tle2b
XM_039810382.1 mRNA downstream 33926 23914092 ~ 23998384 (+) False tle2b
XM_039810384.1 mRNA downstream 33926 23914092 ~ 23998384 (+) False tle2b
XM_039810383.1 mRNA downstream 33926 23914092 ~ 23998384 (+) False tle2b
XM_039812449.1 mRNA downstream 253498 24133664 ~ 24137514 (+) True s1pr3a
TU131697 other upstream 358852 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 514761 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1260468 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1261522 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1261746 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 901752 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 972135 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 987851 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1652659 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1850092 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile