RNA id: XM_039811026.1


Basic Information

Item Value
RNA id XM_039811026.1
length 1570
RNA type mRNA
GC content 0.49
exon number 9
gene id henmt1
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10617375 ~ 10627039 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTCGTTGTCCAAAAAAacgaataaaataaaaatactgcgTCAACACTAAATAATAACAGCGCCCTCTGGGGTCCGACGAGGACGGTAGCTGGACGCGAAAATGGATCCAATCTTCAGTCCTCCActtcacagacagagacatcagTTTGTCATAGATTTTGTCAAGAGGAACAAACCCAAAAAGGTGGTGGACTTGGGCTGCAGTGAGTGCAGCCTTCTTCAAAAACTGAAGTTTCACCGTGAAATTGAACTACTGGTTGGAGTGGACATCGATGGtgccaatataaaaaaaaagatGCATGGATTAGCGCCTATGTCGACTGACTATCTGCAGCCAAGTTATGATCAGCTGCGCATTGAGCTGTACCAGGGCTCAGTCACACAAGAAGACGCCCGTCTCAGAGGATTTGATCTGGTGACCAGTATAgagctCATAGAGCACCTCACTCTGGCTGACGTGGAGCGCTTCTCTGAGGTGGTGTTTGGTTACATGACCCCAGTGGCTGTTATCGTCAGTACTCCAAACTCTGAGTTCAACCCCCTTTTCCCTCGACCGGCAGGTTTCAGGCACAGTGATCACAAGTTTGAGTGGACCAGAGCAGAGTTCAAGTCCTgGGCTCTGAAGGTGTGTTTGGAGTACGGTTATGAGGTGGAGTTCACTGGTGTTGGACAGGCGCCACGCGGCCAGCAGGAGAGAGTCGGCTTCTGCTCTCAGATTGGTGTGTTCCGCTGGCTCGGGGGGAGACAGCACTGCAACATGTTGTTTGGTGATGATGCTGAGGATGTGTTTTCATACACACTGCTCTATAGTATAAACTACCCCAGCCTGCATGACAATAACATCTTGCAGAGGGTCCTGGTGAGTGAGGTGTTGTACTGGGCAGAAAAGCTGAAGAGAAACTGGATAGAGGAGAAGACTGGTGAGAGGGATGACACTTCCACATTGTGTCCGGCTGAGGGTGAAGGGGAGGAATGCCTCAGAACGTCGGAGCGACACATGgagatggaagacagacagacagCAGAATGTGGAGCAGAGACGAAAAATCCGGGGGAGCGTCAGGAATCAGAGCTGTTTTGGACAAATGGCAAAGGACAACAGGAGTCCTGCAAATTGCGCAGgtgtgtgtctgtacctCTGGCTGTGCTTTGGTCCTGCTGCCCAAAACTCAGTGTCCTGAGTGGAAGTCTCAGTAATCTCAGACATGTCCTGATGGATAACCCCGAAGTTAAACTGAGCCAGGACGGCTCTGCTGTGCTCCTAAATGACCAGGAACGAGaccttgaagaggaagaagaggatcGTGATGATTTGGAGGACAGCGGGTATGCAGTATGCTCCCACAGTGCTGAGCCAGAGGAAGACTGGGAGAGAAATGTTTGATCTGGAAGGTGCAGCTTTGTTGTTGAGCGAGCAAACGGTTTTCCTTGGTTACTACTGGGCAGTGCAGTTGTAGCAACAGTTCCCAACTGCACTGTAGAAACTGGCTTTTGGATTTATTAGATGGTTTATTTTGACTGCATCTTTGTGTTGTAGGCGACAATAAAGCTCTAAATGTGAGAAAAGG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K20798 HENMT1; small RNA 2'-O-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127515 lncRNA upstream 85994 10530696 ~ 10531381 (+) True G94515
TU127434 lncRNA upstream 107837 10507652 ~ 10509538 (+) True G94450
TU127411 lncRNA upstream 203614 10409523 ~ 10413761 (+) False atp11b
TU127406 lncRNA upstream 212142 10339236 ~ 10405233 (+) True G94426
TU127597 lncRNA downstream 84164 10711203 ~ 10711496 (+) True G94587
TU127612 lncRNA downstream 289886 10916925 ~ 10940007 (+) False G94598
TU127618 lncRNA downstream 321464 10948503 ~ 10948822 (+) True G94604
TU127624 lncRNA downstream 336509 10963548 ~ 10977065 (+) True G94609
TU127628 lncRNA downstream 369438 10996477 ~ 10997201 (+) True G94613
XM_039811527.1 mRNA upstream 8149 10592837 ~ 10609226 (+) True LOC120565623
XM_039811647.1 mRNA upstream 63523 10543708 ~ 10553852 (+) True LOC120565703
XM_039812196.1 mRNA upstream 114309 10493529 ~ 10503066 (+) True zmat3
XM_039812412.1 mRNA upstream 166393 10440558 ~ 10450982 (+) False kng1
XM_039811765.1 mRNA downstream 26600 10653639 ~ 10668886 (+) True slc25a24
XM_039812123.1 mRNA downstream 54500 10681539 ~ 10691086 (+) True LOC120565966
XM_039812277.1 mRNA downstream 68984 10696023 ~ 10714882 (+) True tm4sf18
XM_039812280.1 mRNA downstream 95863 10722902 ~ 10731305 (+) False LOC120566058
XM_039812279.1 mRNA downstream 95876 10722915 ~ 10733961 (+) True LOC120566058
TU127375 other upstream 457568 10074206 ~ 10159807 (+) False LOC120565490
TU127361 other upstream 669145 9947106 ~ 9948230 (+) False ttc14
TU127346 other upstream 714186 9902285 ~ 9903189 (+) True G94376
TU127196 other upstream 771394 9844749 ~ 9845981 (+) False LOC120565620
TU127195 other upstream 771571 9844749 ~ 9845804 (+) False LOC120565620
TU127611 other downstream 289886 10916925 ~ 10941244 (+) True G94598
TU127615 other downstream 319937 10946976 ~ 10948246 (+) False si:ch211-162e15.3
unassigned_transcript_388 other downstream 621536 11248575 ~ 11248647 (+) True trnam-cau_8
TU127781 other downstream 801992 11429031 ~ 11444533 (+) False LOC120565923
XR_005640174.1 other downstream 2378537 13005576 ~ 13100445 (+) True raver2

Expression Profile