RNA id: XM_039811037.1


Basic Information

Item Value
RNA id XM_039811037.1
length 2428
RNA type mRNA
GC content 0.49
exon number 11
gene id ppat
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38198996 ~ 38209487 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTATCCACTGAACTAAACTGCATCCAATTTTCTCTTGACGAGACGATTGATTTATCAAAATGTAATCAAGAGCAAACAATTGGCCGCTCGACCGTATCGATTAATCAGATTTCGATAAGTTGTTGTCCTCGTAAAAAATACCACGTGTTTCGCCAGTTCAATAAGTTTGATAAGAAATGCTTTCTGATTATGTCATATCAGTTATAGTGGCCTGTTGCGTTTGTTAAAGCTGCGCTCAGTGATGCTTTTTATGTCGCAGCTTTGTTTTTCCGACTCGTGATTTCGAGGCCACTTGTACAATGTCAGCTGAGTTTATGTTGTCTTAACGAGCCACGTTGTAGTGACCGCCTGCAGCCATATCAACGCTCTCTGCACGTGCTCGGTCAATACTTTCGGAGCGCGTATAGGTAAGCACGAGCACGATTGCCCAGGCAACCACCGGGCACGAGACCGTCAACCGGGGTTAACCGAGGACAGAGACCCACGGCGGCTGGATGGAGTTTGAGGCGTCCGGTATCGGGGAGGAGTGCGGTGTTTTCGGGTGTGTGGCCGCCGGAGAGTGGCCCACACAGCTGGAGGTGGCTCAGGTCTTAACTCTGGGACTTACGGCGTTACAACACCGGGGTCAGGAAAGTGCTGGGATTGTCACAAGTAATGGAGCCAGTCCACCCACGTACACAGCCCACAAGggaatGGGATTAGTGAGCAGTGCTTTCCCACCTGATGCTCTTCTGAAGCTGCGCTATGGTAACCTCGGTATTTGTCACACACGCTATTCAACTACTGGGATCTCAGAGCTGCAGAACTGCCAGCCCTTTGTGGTGGATACACTGCATGGCAAGATTGCCGTAGCACACAATGGAGAGCTGATTAATGCGCATGCCCTGCGGAAAAAAGTAATGCGCCATGGTGTGGGCCTCTCCACCAGCTCAGACAGCGAGCTCATCACCCAACTGCTGGCATTGACTCCACCTATGGAGGAGCAGGACGCACCAGACTGGGTTGCCAGGATTAAAAATCTGATGACTGAGACCCCTACATCGTACTCCCTGTTGGTGATGTTCAAAGATGTTATCTATGCGGTGCGTGACCCATACGGAAATCGACCTCTCTGCATCGGACGGGTCGTTCCTGTCTCTAAACTGCACAGTTCAGAGGAGGACACTGAGGGGTGGGTTGTGTCGTCCGAGTCCTGCAGCTTCCAGTCCATCGGTGCCAAGTATTACAGAGAGGTCTTACCAGGAGAGATAGTCCAGATATCCAACCACGGGGTCAAGTCTCTAAGTGTTGTCCCTCGCCCTGAAGGAGACCTCCCTGCCTTCTGCATATTTGAATATGTGTACTTTGCCAGACCGGACTCTATTTTTGAAGGTCAGATGGTCTACACCGTCAGGCAGCGCTGTGGTCGGCAGTTAGCCATCGAGGCTCCAACAGACGCAGACGTGGTCAGCACTGTGCCAGAGTCTGCGACTCCTGCTGCACTGGGCTACGCTCAGCAGTCTGGGCtgccatatatagaggttctgTGTAAGAACCGCTACGTCGGGAGAACATTTATTCAACCAAATACCCGGCTGAGACAGCTAGGAGTTGCCAAGAAATTTGGGGCTCTGACAGACAACTTTGCTGGGAAACGAGTGGTGCTGGTAGATGACTCCATCGTCCGAGGCAACACCATCTCCCCCATTATAAAACTGCTGAAGGACGCCGGTGCAACGGAGGTCCACATCAGGGTGGCCTCTCCACCCATCAGACACCCTTGCTACATGGGCATTAATATTCCCACCAAGGAGGAGCTCATCGCCAACAAGCCAGAGTTTCAGGACATTGCTGGATACATTGGTGCCGCCAGTGTTCAGTATCTGACTGTGGAGGGCCTGGTATCAGCCGTTCAGGAGGGAATCTCCTCCCTCCAGCAGAAGGACAAGATCAGCTCCAATAACAAGTCCAGCAAGCGAGTGGGCCACTGCACTGCCTGTCTGACTGGGAAGTACCCAGTGGAGCTGGAGTGGTAACGCCATGACTGACCAGAGTTAGAGCAGCAGCACTGTGGGTTTACTGCAAGCGCCTGCATGTGAATGTAATGTTCTCTGTAGACTAGAAAACAGGCTGGGCATTTGTATACTGCTATCTGGGACACTAAATACACGCAGTAGTTTCACATTTCAAGCCTTAACAAGACAGGAGTGTCAAATAGAATGTACTATGTCAGAAAAGCGCACAAGGCCCGTGACCAAAATGTTAAATTGTCTTTATTTTCCTTGTCACGTTTACTTTTCTACCTTTTACCTTAAATGAAACATTATGCTCTTTTGTTTTGGGTCTGACTGTtgcatattttgtttttctaacTTTAAATCTTGCATGAAATATAATGGAAAAGAAATGATAAACATTAACTATAATAAACAATATCTACAATGACAA

Function

GO:

id name namespace
GO:0009113 purine nucleobase biosynthetic process biological_process
GO:0009116 nucleoside metabolic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0004044 amidophosphoribosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136154 lncRNA upstream 136324 38057588 ~ 38062672 (+) True G101081
TU136152 lncRNA upstream 152173 38046044 ~ 38046823 (+) True G101080
XR_005640176.1 lncRNA upstream 183722 38013189 ~ 38015274 (+) True LOC120565003
XR_005640226.1 lncRNA downstream 38041 38247528 ~ 38248312 (+) True LOC120565354
TU136319 lncRNA downstream 159210 38368697 ~ 38370401 (+) True G101208
TU136322 lncRNA downstream 163077 38372564 ~ 38372975 (+) True G101211
TU136347 lncRNA downstream 251187 38460674 ~ 38463579 (+) True G101232
TU136362 lncRNA downstream 304885 38514372 ~ 38514831 (+) True G101245
XM_039810259.1 mRNA upstream 10310 38179031 ~ 38188686 (+) True LOC120564983
XM_039812287.1 mRNA upstream 20633 38168461 ~ 38178363 (+) True nrl
XM_039812288.1 mRNA upstream 20633 38168461 ~ 38178363 (+) False nrl
XM_039811760.1 mRNA upstream 62816 38093026 ~ 38136180 (+) True LOC120565755
XM_039810203.1 mRNA downstream 8328 38217815 ~ 38235264 (+) True aasdh
XM_039811807.1 mRNA downstream 51038 38260525 ~ 38263359 (+) True chst14
XM_039810439.1 mRNA downstream 98387 38307874 ~ 38314350 (+) True nmu
XM_039810436.1 mRNA downstream 108446 38317933 ~ 38344663 (+) True clocka
XM_039810437.1 mRNA downstream 108446 38317933 ~ 38344663 (+) False clocka
TU135875 other upstream 708924 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 1066691 37132169 ~ 37132305 (+) True LOC120566223
TU135631 other upstream 1500127 36695437 ~ 36698869 (+) True G100671
TU135471 other upstream 1664457 36495484 ~ 36534539 (+) False smim24
TU136417 other downstream 667724 38877211 ~ 38880605 (+) False usp46
TU136690 other downstream 1250959 39460446 ~ 39464450 (+) False LOC120565708
TU136718 other downstream 1351635 39561122 ~ 39565955 (+) False reps2
XR_005640166.1 other downstream 2305606 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 3015604 41225091 ~ 41225162 (+) True trnap-cgg_3

Expression Profile