RNA id: XM_039811110.1


Basic Information

Item Value
RNA id XM_039811110.1
length 2673
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC120565357
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20582506 ~ 20587615 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACCCTGACCATGCCCAGTAGCCAGCTACaaatcagactgtggttgtactagtgtgtgtgtcagtatgctGTTGCCTTACTTCCTTGATTGAATGAAGGGAATCTGTAATAACACAAGATGTATCTATTTGatgtttagttatattttacCCAGGTGAAGACTCTGACTGCATTGCATTGGCCATCACCATGTCTGGGTAGTTAATACAGGAAGGTGCAATTGGTGTATCCAGTATTTGAGGTAAACAGGGCCATCTTGTGGTCAGACTAGACGGTACGATACTGTAGGTGTCTGTGGATCATTACTGCTCTTTACATTCAGCCTGTTATTGCATTCTCAATTATTTCCCTTAAACAAACTAAGAATCCTGCCACAGGGGTGAGCTTATTTCATATTTTCCATACCCGTCAAGTTATTCAAGGATTTTCTACAATCTCATTTCTACAAAACAGCACTTGTAGCAATAAGGAATCACAGTTTAAATCCAAACCTACCCTcagcttttgattttttttttaaaagaacatcTATGGTTCTTGTTTCATCACCACTTTTATCATTTAATGTTCGACTCAAAATGGAGGAGATTTTAATATCTCAACTCCAGTGTCATGCTGACCCCCTTGTACCTGTGGGACAAAACTGGTTCGACCAGCAGAGACAAACAAACCTGTTCTTCAAGCAAAGAAAAACTTGTAATCACTGTACTTGTTTTGACTTGTTCTGTTGTAATGCCCTGGAAGTGCCAAATGGTTGCCATAATTCAGATTGTGTCACACGATTTGTCAATTCACATTTCACTTTCATAATGACTATTCTTCCTTAGAAATATTCAAAACGGTTTCTTGAATCCTCAAAATGTACTAATACATTAATTTTAagatcacattcatacagtagTTAATTCTTAGTGGATGTAGAACGTCTTTCAAAAGCTTTATGCTTGAGCTATGGTGGAAGTGTTCAGTTTGAAGAGTATCTTACTCTTATCAGTGTCATCGTGTCCATATTTATTAAAACAGCCTGTCAAACTACTGTATTTCAAAGGCAGATAAACCCTTACATTTTACCAGCTTGTCAACAGGCAGATCAACATTCTGGTGTTAGGCACAAAATCTATGAATCCTTTACAATGATGTGTCTGAGCAAGGAACAAGGAACAAGGAAGCAGATGAAATGTGAAAGATGTGGGTGTCAGTTTGGtctaactgaaatatcacagcTTTGTAACACAGATGCACAGTTGACTGTGAAGAGAAATGGCAATGGCTAGATACAGGACAATGATGAAATTCCTCATCAGTGTTGGGATCCTTTTCCAAGGGTGTGATTCAGATGTGAAATGCCGGGATGACAAAGGAAAAGAGGTGGACTGGTATATTCTATACAAGTTGCCCCGTGTGAAGGATGACGGTTTGTCATATCTGTACATGGATGAGAGCACCAACGGATGGAAAGCCAGCAAAGAGACAATCAACAGTAAATCTAGCACTCTGGCGAACACCCTGAACCCTCTTCTTGACTTCTACGACAGAAAGATTGAAGGCTTTGGATACATGCTCTATAATGATCAACCTCCAGAACCATACGCTGCTCCTGCATCATTTGGCCACAGTAAAGGAGTTGTGATGCTGGACAAAAAAAGTGGAGTTTGGCTTTCACACAGTACACCAAAATTTCCAACATATCGCAGTAAAGACTTCTGGCCAGACAGTGGAACCGCTAATGCTCAAACATTTATGTGCGTGACTTACTCTTATAATCACTTCAAAGAAATAGGATTGCAGCTGAAGTACATCCATGCTTATTCATATGACTCTGACATCCCGACAACCTTTCACAAAGAGCTGCAATGTGTTGCACAGCGAAGCTGCTACCCAAAGAAGGAACCCTGGTTTCGTGTAAAGATGCTGACTTCAATGACAGGACATAATTTCTCTAGCTTTGCGAAATACACCCGTTTTTGGGATGATCTTTACTCTGGCCTTATTGTTAACCATTTGAAGCAGGATCTCTACATTAAGAGCTGGGGGAAGATGCGTAAACCTCTGCCTTCTAACTGCAGCACAGACATCCCTCATCATGTGTACAATGTGAAGGAAGTAAAGCTCCTAAAGGGGAAGCCCTTTGGTGATACTGTTGATCACTCCAAGTGGTGTGTAACTTCTGGTGGTGGCTGGACCTGCATAGCTGATATGAACAGGGAAGAGAGTCAGATGAAAAGAGCTGGAGGAGCAATATGCACAGATAATGTTGCTGTTGGGAAGGCTTTCCATGCACTGATCACACAGTATGAACCATGTAAACATGACCTTCCACATTCTGAGGCTCAACACAGAGAGCTTTAAAGGCACAGGCCTTCGTGGAAATGTAAGGAAAAGTATAGCAGATCTCCAAAAAAAGTATAAGAAAAGACTGGAGCCTGATATCACTTAATAATAACACTAACTACGCCATTACATATCCAGACTTAAAATTGTTGGTTGCAAGCTTTACATTTTGCACAATGTGTTGGTGTAGTATATTAATTCCtgtcttttgtgttttgtattatgtattttaaTCAATGAAAAActgcagtgtttttattttgaaaatcatgCATTAAGCATTTGTCTATACAATCAGGATACTAGAATTCCAGATGAAATAAATTTAACTGAATGATTAGA

Function

GO:

id name namespace
GO:0000737 DNA catabolic process, endonucleolytic biological_process
GO:0004531 deoxyribonuclease II activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130468 lncRNA upstream 29147 20549030 ~ 20553367 (+) False prkacba
TU130469 lncRNA upstream 29147 20550846 ~ 20553367 (+) False prkacba
TU130455 lncRNA upstream 96628 20474807 ~ 20485886 (+) True G96692
XR_005640266.1 lncRNA upstream 111767 20468553 ~ 20470747 (+) True LOC120565515
XR_005640207.1 lncRNA upstream 293133 20266651 ~ 20289381 (+) True LOC120565226
TU130520 lncRNA downstream 27317 20614932 ~ 20615202 (+) True G96742
TU130542 lncRNA downstream 84051 20671666 ~ 20674195 (+) True G96753
TU130543 lncRNA downstream 84051 20671666 ~ 20673633 (+) False G96753
TU130545 lncRNA downstream 86642 20674257 ~ 20676737 (+) True G96754
TU130547 lncRNA downstream 86642 20674257 ~ 20675129 (+) False G96754
XM_039810265.1 mRNA upstream 250 20576523 ~ 20582264 (+) True dnase2b
XM_039812396.1 mRNA upstream 14402 20564975 ~ 20568112 (+) False samd13
XM_039812397.1 mRNA upstream 14402 20565536 ~ 20568112 (+) True samd13
XM_039811698.1 mRNA upstream 17690 20549000 ~ 20564824 (+) False prkacba
XM_039811117.1 mRNA downstream 683 20588298 ~ 20595439 (+) False rpf1
XM_039811116.1 mRNA downstream 685 20588300 ~ 20595439 (+) True rpf1
XM_039811109.1 mRNA downstream 10967 20598582 ~ 20605337 (+) True spata1
XM_039811657.1 mRNA downstream 32980 20620595 ~ 20630337 (+) True vtg2
XM_039810645.1 mRNA downstream 65333 20652948 ~ 20662698 (+) True LOC120565169
TU130185 other upstream 1050837 19530767 ~ 19531677 (+) True G96513
TU130059 other upstream 1796878 18782600 ~ 18785636 (+) True G96418
XR_005640349.1 other upstream 2710103 17872278 ~ 17872411 (+) True LOC120566214
XR_005640363.1 other upstream 2710667 17871710 ~ 17871847 (+) True LOC120566229
XR_005640362.1 other upstream 2713712 17868666 ~ 17868802 (+) True LOC120566228
TU131036 other downstream 1103282 21690897 ~ 21782000 (+) True G97093
TU131315 other downstream 1696031 22283646 ~ 22287272 (+) True G97321
XR_005640282.1 other downstream 1897896 22485511 ~ 22488103 (+) False LOC120565764
XR_005640308.1 other downstream 1905342 22492957 ~ 22501015 (+) False soat1
XR_005640352.1 other downstream 1984444 22572059 ~ 22572139 (+) False LOC120566218

Expression Profile