RNA id: XM_039811127.1


Basic Information

Item Value
RNA id XM_039811127.1
length 6959
RNA type mRNA
GC content 0.48
exon number 9
gene id nhsa
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39597704 ~ 39661492 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTCTTTCTGTTTTACTGATCAGAAGGGACTTTCACCAGCAGCTGACTGCCGACGCGCAGCAGAACAGCAGCATTGGTTTTGTGACAGCCAGCAGATTTAAATTTTTAGATTTTTGGCAACAGGGAAGACGTGGATAATTCTCTCAGCTATTTGATGATtatctgtttacatgttgtttcTTGGCCGATTCAGCGGTGTCTAACCTGGATGTGGAGAGTAAGCTGACAGCACATTACCAAGCTCCCTGGCACCAGCAGAGGAACATTTTCCACCCCTCCACACGGCCAGCATGTGTTGTAGACCTCCACAGGCAAGCCAACGTCAGCCTGTGGGCCCTACACCGAGATTACCAGAGGAGACGATCAGGCAGCAGGGAGCGGAGAGTAACCATCTCGATGCCCATGTACCCCTCCCCACACCTCGTCCAGAGGCAAGAACACAGGGGCACAAATGTGACAACGTTTGAGTCCACCCGCTCCTCCTCCCCTACCGAATGTTGCCGCTTCTCTCCCTGGAGCAGAAAGGCTGCGCCCTTTGACCCCGACACTGACGGGGTGGCTCTAGGTCACCGGCCCAAGTTTCCCATCCCTAACACCCCCTCCACCCTGGACAAGCAGACTAACTGGTCTAAAGCCCTGCCGCTGCCCACCCCAGAGGAAAGAATGAAAAACAATTCCCAAGTCATCACCTCATTTGTCATCCCCATTAATGTGACTGGCGTTGGCTTTGACAGAGATGCCAGTGTGCGCTGCTCGCTCGTTCACTCGCAGTCTGTGcttcagaggaggaggaagctgAGGAGACGGAGGACTGTCGCTGGCGTTCCCCGACAGGTGCAGCAAGATTTAGACTCTGATGACTCTCCTGGTTCCAGAGAGCGGACAGTGATAGTTCATGCCAGTCCCAATATCACTCCCTCCAACGAGGAGCTGGCTAGCCATCACAGCACCAGGGACTCCGGTTGCCAGACAGAAGAGTTTTTGATCTCAGGAGCGCCGTCTCGGCGGAGGATCAGGGCCCAGAGAGGCCAGGGAGTCTCCCTCTCCCACTCAGCAGGCAACATCTTGTGCCTGTCGGACAGCGCCGACGCCATGTTCTCTGCCTCCGTGGGCGCGCGCCTGCGCTCCCGGAGTCTGCCCAGAGACTCGAGCCGGATGATAGACAACGGGCACAATGACAGCGACGATGAGGAGGAGCTTTCCCCCTTCGACACCGAGGACTTCCTGCCTGGACCGGGGGAGTTGATTCTGAAGGATGAAGAAGAGAGCATGGATGAGCAAGCCATGTCTGAACACCAGCTGGGCCTGAAGTACAAGCAGCTCTCCGAGAGACCGGAGCGCAGCTGGATGGAGAGGACCAGATCCCAACTGCCCAGGAAGGCCGACATGGGCAGCTGTGAGATCTCATCCAGTTCAGACACCTTCAGCAGCCCGGTGCATTCGGTCTCCGCTGCAGGGGTGCTGGGAGGCCAGATGGACCATAAGGACGACCACCAGTCCTCAAGTGGTAACTGGAGCGGGAGCAGCTCCACCTGCCCCTCACAGACCTCCGAAACCATCCTCCCAGCAGCCTCTCCGCCGCTGACGGGCTCCTCGCACTGTGACTCCGAGCTCTCCCTAAACACCGCCACTCACTGCAACGAAGACCACACCAGCTTCATGCTGGACCACTACCAGGGTCTCAGGACCCAGCGGGCCGGCTCCTTCTCCTCCACAGCTATGGACATATTAGAGGAAGCAGGGTCCAGCACTCCCATTGAGGGGGAGTGGAGTTACCCCAACACAGAGCCTCCGCGCTCGCAGGACTTCAGCCCCGAGCCCAGCAGAGAGGCTGAGAGCAGCCTGGGCTGCCCCAGCTTCACCAGCATGGCCACCTGCGAGAGCAGCTTCTCTGACAAACCACTGTCGGAGAAAGCCGACACCGTGTCCCACTACTCCGTAGACACTGAAGGCTACTACACCTCAATGCACTTTGACTGCGGTATCAAAGGTAGCCAAAGCTTCACTTATAACTATGCAGCCCCCGGCTCTGATTGCGGCCTGTCTGACTTCAGTGGTCACATGACTCTGGGGAGGCGCTGCCTCTCTTTAAGAAAACCAAAGGCGAAGCCTTGTCCGCCTAAGAGGAGTTCATCCTTAAGAAAAATATGCAGTGAGGGACACATCCCTGACGATAAAGAACCAAAGATTACTTGCGGGCCGCAGCTTCCGCTGTCCTCCAAGGAGAGGAAGCTGCAGCTGGCTTTGTCTGGCTCTGCTGGTCGTATAGACAACTCTTCACTTGTCAGAGAGCCCCTTGGGATCTGGGGGGTTGAGGGCTCAGCTGATCTACCTGACTTAGGTGTGTTTAGCTCCACAGATGCACATTCATTTAAGGACGAGGGGGTTGTACAGTCTGACTATGCAGATCTGTGGCTCCTGAACGATTTAAAATCCAGCGATCCTTACCGGTCTTTGTCAAACTCTAGCACAGCGACAGGTACAACTGTTATCGAATGCATCAAATCACAGGAGAGCTCTGAGTCTCACACATCCCAGTCTGGCTCCAGAGCCACCACCCCCTCACTTCCATCAGTGGAGGGAGACTTCAAGCTAACGTCTCCAGAGAAGCTGGCAGGCCTGGCCAGCCCATCCAGCGGTTACTCCAGTCAGTCAGAAACCCCCACCTCCTCTTTCCCCTCCGCCTTCTTTCCCGGACCGCTGTCACCATCCAGCGGCAAGAGGAAGCCCAAAGTCCCAGAGAGGAAGTCGTCTCTTTCGTCGCTGTCACTGCAGTCGCTCTCCTGCAGGGATGGAGCTACCTCGAAGAGAGACCTGGAGCTGCCAATAATCCCTCCATCCCACCTCGACTTAAGTGCCCTTCATAGTGTCGCCAACAAGGCTCCAGCTTACAGGACCCAGATTCAAATCCTTCAGCATAGCAAACAAAAAGCTCCAGTGTCAGCCAAACCTGTAGCGCCACCTAACACCCATCCCATGTCCATTACACCCACAGTGCTGCACTCAGTACAGCTCCGGTCCATCAGTAAGGAACATGAAGGAAGCCATGAGGACAAAACGACTTCCAGACTCAAATGTCCCACTGTGAACTTAACTGGCACACTTTCCTGTAGCAAATCTGTGGAGCTCAAGAGTCCCCTGTTATATAACCCACATCAACATCACCCACCCTCGAAGGGCTTGTGTGAATCCGTGTTTACCTCAAACGAAGAGCTTGCCGACGGAGAGGCAGCATGTCAGAGTGAGGCGAGGATCGAGCAGGACAGAGAGGCTCCATTAGAGAGTAGGACAGCATTCAGACTGCAGGCCAAGTCATCATTAGACGTCCCCGAGAGGACCACTAGTCATGAAGGAGAGACGTGCGGAGAGTCAGTAGAAACAGCCGTCTGCTCTGGAGACAGCAGCTCGCTGTCCGAGCCTTTACACCAGCAAAGAGCTGAGCCGTCTGAAGAAGAAGAACCGTGTCAGATTAAACCAGGTCCTCCTCTCCCTGTTCAGCCCAGTTCACCCGAGAGATCCAACCTTTTATCAAACGGCCTTGATAAAGGGCCCGCTACTGACGGCAAATCAAGGACATCGCAGGGGAGTTCAAACAGCGATGAAGGTAGCAAAGAAGTGGAAAATGAGTTATCGGGTGCTTTGGCAGAAAATGGCTCCCAGGACGACAGCCAGGAGTCCACAGCAGAGACCAACGATTGCTTCAGTAAAGACTCTACACCCAGTGATAACCCAGTGTCCCCCCTGAGTGATGAGTCAAGGCCAGAGGACGACAGTGTGTTTCTGTCACCCACCAAGGCTCGGACCACTGAGGATCTGTTTGCTATGATACACAGgtCCAAAAGGAAAGTGTTGGGCAGGAAGGATTCCGCTGAGTTGAATGTGAGGAACCGCCTCGGTGCTGCATCGGGGAGCACCCCGACCGGCAGCACTGCGAGCTCCCCAGTCCCGCTGGTGTCACCCGCCCCCGCCGTGACGCCGCCGGGCCTGCACAGAGTCTCCGGGCCCATCTATAGGAACGCAAAGAGGTCCAGCACCTCCAACGAGGAGTTCAAACTGCTACTGCTCAAAAAGGGCAGTCGCTCAGAATCCAGTTACCGCATGTCAGCAGCAGAGATCCTCAAGAGCCCCGTCACTCCTAAATCTCACGGAGATTTCCTGATGGAGTCCCCCAGACAGCGCGAAGAGCCCGCCTCTCCcctgcagcaacaacagcagcatcaGTCAGGACCAGATCAGCCCTCCAGCCCTTATCCCAAAGCCAACGCAGAGGGCTTCTCCCTGAAATCCTTCCCCTCATCTGCTGCTTCCAGGCAGGGCCGCTCCAGAATCCCCCCGCCTGCCAACAGCAGCCGCTACGGCATGCGCAGCAGACTGTACCCCGTGCCCATGCAGGCCATCTCTGAGGGCGAGACGGAGAACTCAGACGGAAGTCCTCATGACGACCGCTCATCACAGGGCTCCACATAGAAAACAGAGTAACAGTGTCAGAAGGTATGAAATTATTTTGTTagtttacagtaaaaacaaatgGACCAGAATGAGTTCTAATATATAAGAGGTGTAGTGAGGGCAGGAGCATTGAGGAGGTTATTGTTAATGTATACAGAACATTAGAGATAATCcacttttttaaagaaataatcaTACATTTACTGTTTGTGGCTGAGTTTTATAGATGTTTCCTTTTGGTTATTCTGTGGATACTTTAAACAAATGTACCTGTCTTCAGAAATATTATATACACACGTGATATGAACACTTAGCATTAGAAACAGGGAACCAGATCATTTAGCATCTGCAGCAAAATATGAATGATGATTGAGTAGAAATGATGAGCAAAACATTATtctacagaaaacaaaaaaaggcataCATGGTTCTAAAAAACTATTATTTGGTTAGTTTATGGCCAAAGCCATGTACAACACCAATCCTTCCCTCAGCCCTACTACAGTATAttcatgttcaatctgttctgCTGTCATATTTCTCCAGAATTTAAAATGATTCTCACAGATGGAAATTTTTATCTAGTAAAAATGGGAAAATATATTGGATGAACTGTATGTATTCTGTGAATACCTATGCAAGTAGACaccatttttacatttcttcaagcCAGTTATATAACTAATTGTGATGCTCTCCAACTGATCATCAGGACTAACCCTGTGTGAGAAACAGCAGTGTGTACAAAAATGTGAATCCTCAATGCATCTATTCCTATTGATGTGTTTGTATATTTTACTCAGTCCTTTTCAAAGCCTATTGTAAATTATGTCAAAGATAGCTCACTTTAACAATATTTTCAAATTCTCATGCAATAAGACGAGTAATTAGAGGTGACACAGGACATGTCAGAGCCAAGCACTAACTTGACAATCTTAGGAGACAAGAAGGGAGCAGGTGTTAACAtgggagaagaaaaagtgatcaaaaagtcCGAGGTGGTGAACTAGGAGAGCTGTAAAAGAATAAGGaggttgtgtgttgttgtttttttaaaacatgaaaaggGTCATTTCTGGTTTGCTGACTCAGTGTGTTTACGAATTGTTGGAAGAGGCAAATGGAAAGTGTTCAGGAGGATCAAATATGCCTTATTTTACGCTCAACAAGAGACAGTAAGTGACAGAGCAGCTTGGCCCTCAGCAAGTGGAGtgtttttatgagatttttcggTTTTGATGGAGGAGGTAGGGTTAAATATGGAGCCAGGTTATCATCTATCTATGATGAAAAGACGTCCTTCTGGATTTAGCGGTCTAGCATTTGCTGCTATTTTGTACCAAATGCTCGTCTATTTAATTTTCTATCAAAATATAACCTCCCGTAgtttcatattttttgtgtCACAACAatctaaatatatttatttttataactggCACAGAAATTCTCCGTACGATTCCCTGATTTGATTGACACCTCTAGATAACCTAAAACTGAAATCTTTACATGTAATGAATTGCTGGTATAATTAATAACGTATTTTATTCAGATAGTTATTTTGTGTATAAGAGACAAATTTTAAATCTTATTTCAGACACTGGTTGCAGAGACAAATAGGAAAGCCACTCATTAATTAACAGTCATAAGCTACAAGTTAGGTTTTAGTTGTAACCCTGGCACTCTGAGGCTTTTTATTTGTCCCACATATTCACAATCATTTTATAAGTATATGGTGTTTAATGCAGTGATGGTCTATGTTGCCATATTGCCCTATGGAAGACTGTTCTTCCCTATAGGTACACTGTAAATATCAACTTAATTTTGGCCTTAATGATACTCCATACTAATGCAATGTCATATAACAGGGTACACAATGGGTTGTGTCTATGTACCTTCATTccaactttttttcctttttttttttgcactgatAAAGTGATGTTTGTGAAGTTTCATCTGTCTCTTGCTGTACCTGGAGATATTTATAGACCTTTACATGCAGCTGTTTGACTTTCCTTGAATAATATCCACACTCTGAGTACACTTTCAGAGTGGAGTAGATGCTTCTGCCAAAGGCTAGAACGTGCACGTTAGTGGCATCAAAAAACGTTTTTCTCTTCTCGTTTACTTGACTGAAACAAAACCGAAACTAAAGAAGAATTACAGCGTAACTTATGGTACTAGATGCATTTTGGACTTCAGATCGACCTCTGTAGGTATcagctttgtattttttttgtacaaacTTGTAAATACAATAACTTTTGGAATTGTCACAAAGGTTGTTGAATTGTTTcttatgtaaaaacaaaaatgttttcaaagtttacatTGATTTCCAACCTTTGTATATTTTTGAGCTGTGGAACACTTTgtcttgtatttattttttagtaagcATTGTGGAAATCCCATAGTAAATCCTATCAAAGCCAAGTGCTAGCACCACAGGCTGCTTAGCAAATGTGTATAAGAAGACAAATAAATGTGACTGCCTTGAAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136719 lncRNA upstream 74049 39564141 ~ 39565955 (+) False reps2
TU136689 lncRNA upstream 201939 39437654 ~ 39438065 (+) True G101484
TU136677 lncRNA upstream 278296 39356483 ~ 39361708 (+) False prdm5
TU136663 lncRNA upstream 361051 39278652 ~ 39278953 (+) True G101464
TU136619 lncRNA upstream 449223 39190066 ~ 39190781 (+) True G101437
TU136732 lncRNA downstream 18586 39680078 ~ 39680526 (+) True G101519
TU136796 lncRNA downstream 77855 39739347 ~ 39740271 (+) False LOC120565298
TU136797 lncRNA downstream 77855 39739347 ~ 39739963 (+) False LOC120565298
TU136817 lncRNA downstream 210164 39871656 ~ 39872173 (+) True G101579
TU136839 lncRNA downstream 243544 39905036 ~ 39908510 (+) True G101600
XM_039810210.1 mRNA upstream 47242 39561061 ~ 39592762 (+) True reps2
XM_039810209.1 mRNA upstream 95538 39516873 ~ 39544466 (+) True LOC120564941
XM_039810207.1 mRNA upstream 126346 39512710 ~ 39513658 (+) True LOC120564940
XM_039810213.1 mRNA upstream 152526 39478853 ~ 39487478 (+) True slc34a2b
XM_039812312.1 mRNA downstream 3729 39665221 ~ 39675560 (+) True LOC120566071
XM_039812310.1 mRNA downstream 3729 39665221 ~ 39675560 (+) False LOC120566071
XM_039812311.1 mRNA downstream 3729 39665221 ~ 39675560 (+) False LOC120566071
XM_039810964.1 mRNA downstream 32420 39693912 ~ 39740277 (+) False LOC120565298
XM_039810962.1 mRNA downstream 32420 39693912 ~ 39740277 (+) False LOC120565298
TU136718 other upstream 74049 39561122 ~ 39565955 (+) False reps2
TU136690 other upstream 175554 39460446 ~ 39464450 (+) False LOC120565708
TU136417 other upstream 759399 38877211 ~ 38880605 (+) False usp46
TU135875 other upstream 2149932 37463914 ~ 37490072 (+) True G100843
XR_005640357.1 other upstream 2507699 37132169 ~ 37132305 (+) True LOC120566223
XR_005640166.1 other downstream 853601 40515093 ~ 40552957 (+) False atp10a
unassigned_transcript_390 other downstream 1563599 41225091 ~ 41225162 (+) True trnap-cgg_3
unassigned_transcript_391 other downstream 1564142 41225634 ~ 41225705 (+) True trnap-ugg_3
TU137538 other downstream 1791182 41452674 ~ 41453306 (+) True G102165

Expression Profile