RNA id: XM_039811133.1


Basic Information

Item Value
RNA id XM_039811133.1
length 4293
RNA type mRNA
GC content 0.44
exon number 8
gene id rabgap1l
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15027011 ~ 15153577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTACTACCCTCTCACTCTCCCCGCCTCTCCTCCTCTCAGTGGGCGGGGCTCGGCTCCTGAGCGACTCTTGAAAGCAGCCAGTCGCCTCCTCCACTCTCAGAGAGAAATCTAAACCTGTCAGCTGCactcctctccttttcctttcgccactttttctcctctctcttcttcttgttcttcttcttcttcctcctccttgctGTTGGGAGCAAGAGGAGTCAAGATGATGAAGGAGGTGTCCATCATGGTGGCATATGACGCTCATGTAGTCGACAGACCGGGTGAGGAGGACACCCTGGCTCGCTTGGTCGCCCACTCCAGACCTCTCAGAGCTCCCAGACCGGTGGTTCCAACCAAAAAGCTGAAGAAGTTTGAGAAGGAATATCAGACACTGAGAGAGAGCCAGCTGCAACAAGAAGACCCCATCGACCGATTCCAGAGGGAGAACCGTCGTCTTCAAGAAGCCAGTATGCGACTGGAACAGGAGAATGACGACTTGGCCCATGAACTGGTCACCAGCAAGATTGCCCTTCGGAACGACCTTGACCAGGCAGAAGATAAGGCCGATGTTCTGAACAAAGAGCTGCTGAGCACCAAGCAACGTCTGGTGGAgacggaggaggagaagagacgacaggaggaggagactgCTCAGCTGAAGGAAGTGTTCAGGAGGGAGCTAGAAAAAGCAGAGCTGGAGATCAAGAAAACCACAGCGATCATAGCGGAATACAAACAGATCTGCTCCCAGCTGAGCACCAGGCTGGAAAAACAGCAGGCGGCAACAAAAGAAGAGCTGGACATCGTCAGGAGTAAAGTATTGGGCTGTGACCACTGTAGAGACCTGTTCACAACCCTGGGGTCCCTCCAGTCCGCGTCCCCCGGCAGGGACAAGACATCCACCGAGCCGCTGGACGAGGAGAAGGACGGACTGAAGGAGCAGCTGAGGCACCTGGAGCTGGAGCTGGCACAGACCAAACTGCAACTGGTGGAGGCCAAGTGCCGCATCCAGGAGCTCGAGCACCAGCGGGGAGTCCTGATGAACGAGATCCAGGCGGCCAAGAACTCGTGGTTCAGCAAGACTCTGGGCTCCCTGAAGAGCTctacctcctcttcctccagctCCACATCCCAGACCCCGTCCTCACCAAAGGAGGGCCCCGCGTAGACCACCctcccctccatctctccttccCCCTGCAGGATGCACACTAGAGCAGAGGAACACAAGTTGAAGAAACAAGCAGTGGAGAAATGCAGTATGCCTTTTTTCATCCAGTGGCAATGCGGAGCTCGACAGCTTCTTGGACTGAAAATAGCTGATAAGATAAGGGAGGAAACAGGTGGAGGACTGGACCTGCCACCTGTCTTTCACTTAATGTTTACGTTTgagtgaacaaaaaaaaatgtctgtttaCCTTCTCCGCTTCACAGGGGATGAGACAGGTGACGGTGAACCATCAGTGAGGCTTGAAGTTGATTTAGAGTTCAGTGGTCGTTGCTGACACTTTGTTGAGTTCCCATAATAAGAAAGCTGAATTAACATACACAATGGCATCCCTCATGTAGGTGAATAATGTAGCTCCACCTTGTGGTCAGACATTGCTACTGCAGAGTTAtagtcattttttttctgtgtgagaTTATGTTTTTAGGGAGATTAAGTCTCACAATTTGGACAATATTTCTAATGTTAGTGATTGAGCTACATATGCAGAGATATTATACGTTCACTGCATAGAAATATAGTGATCTATATTAACCATCTTCAGCGCCGCAAAGCCACAGCACTCTGAAAAAGGAATACTGCATTCAGTCTTAAACAAGAACAACACAAAAAGTTGAATTTCTTTATAGTAATATAACGTAAACAATGTTGTCATATAAATATGTATAACTAATTATTGATTTTTGTAATAATCTTGTACAGTTCTTTAAGAGAAGAAAACCCAAGGAAAAGTTATTTgttaattttctttctttctttttttttaccgtttGGAATTTGAATGTCATCTCTCTAGATGTTGACGTAAGCACAGTGTGTGATCGAGCCGGTGGAGTCCAAATGCTGAGAACCAAGGTGACAACCTGCAGAGATCTTAATGGGTTTAATTTCGCTGCCGTTTCTTCAGTCATGGGTTGAACTGACTCACGGTGTGTAATATCACCATAACATGTACTGATtagatttgatttaaaatcacagTTCCAGCTCAGGCTTGTAATTGGCATTTTAATTTTCTATCACTACATGCAGATTTTTAAGCATGCAGCCATCATTTTTTGAATAGCTGTGATCAGAAACGGACACTTTTGCCTTTCTATGTCTGTTCCAtcctttttatacttttaatgATTTATTTGGAATTAGTATAACACAATGCCACACAAGTCTCCTAAAAGGTACATGCTAGAGTACACATTAACCttagttttacattttcagttttgaaatgtttttaacgGTCTCTGGTGTCGGCATTAGGGTTGGAGTTGTCAGGGCTTGGGATTTTCTGGCATTTGTTATTTTACAGACGGAAAATCCATCACAGTAATCATGCAGTCAGCACATTAAAGTAGGTAACTCtatagtacagtatatgctCTAAAGTCTCCGTTACATAGCACAATTCATCCCTAAATAAACGCCTAACATAACATTAATAAGCAAGATTAGGGTGCAATTTTCCCACATCATTGCCAAACCGTCCTAAGGCCATTTGCACAGCTGCGCCAACACCTTCTTTGTCAGGTTAACACaacacactttttaattaatacttTACGCAATGAGAACAGCTTGTAGATCACTAAATCTTCCCTGTGTCCATGGTGGACTGTTGGCTGTGTTTCTCAGTGCTAACACATTAGTAAAAACTGCATGGATTGATACGAGCCAACTACTACTGTAGTATCTTGAAAGTGGGAACTTAAATCCGGTCTAAAGCTAAATAGTAAAAGATCTTAAATGATGTAAAGTTAAATTTAGCAGTTTTCTTTAAGTTTTCTGTAAATTCAGCCTTGACAAATTAATGTCTCACTTACTGGATATTTACATGGGACTGCTAGCTAAAAAGTTCAAACTTAATTCACAACCTTTATTGATTTTgacagaatataaaaaaaaaaaactacaaacacTTTCTACTTATGTTGCTGGTTGCCAGTATGAGTGTGAGGACCACAGCCAGTGATATACAGTAAGGACACAAGTATTATTTTGCCGTCTGTGTACTAAGttgacaaatataattggcCAAAAGGTCTGTTTAGCTTTAGGTGGAAAGCTGCAGTGTAGATGCCAAAATGTGCTGCTTTATTCTCCCCTCTGGTTGTCACTGTAATCAGCCTTTGGACTCTGACCAAGCCCATGTgtacttgtttgtgtgtgagtgtgtttttggatgtgtgtgtgtgcacgtgtgtgttcTGCAATGTAACCAAGTGGTTCAAGTTGAAATGGTTCCTTCTTCACGTGGCTGCCTTTTTTGTTGATGACTGAAGCCGTTGGCTGATGAGAGAAAAGCCATCTGACAGTTGGAAAAAGTCTGAGAGAGTCAGCTGTGCCATAAGAGCCCCCCCTCTTCTCCGTCCCCAGTGGTCTTCCTCCGTGCTCCCAACGACCTGAACCAACCATGTCATCTGATCCTATTGACAGATCTGCTGAATATCATTTTCAGCAGCCTGTTTGACACATTTCCACCAGGAGCCTCCCAGTACGACCACTGAGCAGCTCGACTGGAGGAAATGCATCAATATCATGGAAAAGTAGAAAAAGGAAGCTGACTATCATTGATTCCAggtgtgtgttttgcatttCCAGGACATTCCTTCTTCACTATCGTGCATCATTCTTGTTGGTCACACCTGTGACAGTTACAAAGTCGTACAACCAGTTTAATGTCAACTGTGGCCAAGTTGGAGAGAGCTCCTCGTCTTTTATGTGCACTAACACAACATCAATATTTTAAACACTATTTCAAGATGTGCGTTTGTTTAAAAGTTATCCTGAGCACAGagcataattattttttaactgatgattattgttgCTGAGAGGACAGCTGCCAATTTAATATACACTCTAATTCACTTCATTTCAATGATGCAAAAGCAGGCGACCAGTCTGATTTGAGGTGTGATGTTTGTTGTGTAGTTTACAGTTTGCTGTAACACCACAGTCCTGTTACACAGAGAGGGACTGCTCCTCAGCTGGTCCGACTCTAACACTGTTTGCTGTACAGTAACTGTCTGACCTGCATTAATaaatttcagtttttctgtTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128812 lncRNA upstream 203748 14930512 ~ 14932081 (+) True G95496
TU128813 lncRNA upstream 203748 14931069 ~ 14932081 (+) False G95496
TU128807 lncRNA upstream 210226 14923952 ~ 14925603 (+) True G95493
TU128809 lncRNA upstream 210226 14924461 ~ 14925603 (+) False G95493
TU128802 lncRNA upstream 211993 14922981 ~ 14923836 (+) False dennd1b
XR_005640228.1 lncRNA downstream 68556 15222133 ~ 15268185 (+) False LOC120565370
XR_005640227.1 lncRNA downstream 77794 15231371 ~ 15268185 (+) True LOC120565370
TU129007 lncRNA downstream 142707 15296284 ~ 15297193 (+) True G95640
TU129053 lncRNA downstream 234421 15387998 ~ 15389142 (+) True G95681
TU129093 lncRNA downstream 321017 15474594 ~ 15478157 (+) True G95710
XM_039811153.1 mRNA upstream 57358 15072598 ~ 15078471 (+) True gpr52
XM_039812304.1 mRNA upstream 109510 15001169 ~ 15026319 (+) True fam163ab
XM_039812294.1 mRNA upstream 151152 14966266 ~ 14984677 (+) True tdrd5
XM_039812293.1 mRNA upstream 151152 14966542 ~ 14984677 (+) False tdrd5
XM_039812291.1 mRNA upstream 174592 14949403 ~ 14961237 (+) False axdnd1
XM_039811377.1 mRNA downstream 140018 15293595 ~ 15295680 (+) True uba52
XM_039811369.1 mRNA downstream 190089 15343666 ~ 15350593 (+) True ddx49
XM_039812446.1 mRNA downstream 225938 15379515 ~ 15382779 (+) True lsm4
XM_039812466.1 mRNA downstream 317070 15470647 ~ 15472763 (+) True LOC120566177
XM_039812071.1 mRNA downstream 344449 15498026 ~ 15505221 (+) False mpv17l2
XR_005640328.1 other upstream 219223 14810368 ~ 14916606 (+) False dennd1b
XR_005640329.1 other upstream 221796 14810368 ~ 14914033 (+) False dennd1b
TU128764 other upstream 514416 14619358 ~ 14621413 (+) True G95460
XR_005640172.1 other upstream 1753085 13379398 ~ 13382744 (+) True LOC120564964
TU128204 other upstream 1915457 13173025 ~ 13220372 (+) True G95046
XR_005640269.1 other downstream 1166917 16320494 ~ 16341048 (+) False kdm4b
TU129832 other downstream 2702060 17855637 ~ 17859152 (+) False nppc
XR_005640350.1 other downstream 2712971 17866548 ~ 17866681 (+) True LOC120566215
XR_005640362.1 other downstream 2715089 17868666 ~ 17868802 (+) True LOC120566228
XR_005640363.1 other downstream 2718133 17871710 ~ 17871847 (+) True LOC120566229

Expression Profile