RNA id: XM_039811187.1


Basic Information

Item Value
RNA id XM_039811187.1
length 1080
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC120565386
representative False

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23790086 ~ 23835654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGACTTTAGACTCCATGATGGCTTGTTGCCTGAGTGAAGAGGCGAAGGAGTCCAAACGAATCAACTCTGAGATTGAGAAACAACTCCGGCGAGACAAGAGGGATGCAAGAAGGGAGCTGAAGCTTCTTCTGCTGGGTACTGGAGAGAGTGGCAAGAGCACCTTCATCAAGCAGATGAGGATAATCCATGGGTCAGGCTACACAGATGAGGATAAGAAGGGCTTCACCAAATTGGTCTACCAGAACATCTTCACCTCAATGCAGGCCATGATCCGTGCAACCGAGACCCTCAAGATCCCGTACAAGTACGACCAGAACAagAATAATGCCCAGGTGGTACGGGAGGTGGACGTGGAGAAGATTTCATCATTCGAGCAGCCGTACACGAGTGCGATAAAGATGCTGTGGGCTGACCCTGGCATCCAGGAGGCCTATGATCGCAGGAGAGAGTACCAGCTCTCCGACTCAACCAAATATTACCTTAACGATTTAGAACGAATAGCATCAGCTGGGTACGTGCCCACTCAGCAGGATGTGCTGCGGGTTCGAGTGCCTACCACTGGCATCATTGAGTACCCATTTGACCTGGAGAATATTATCTTCAGGATGGTGGATGTGGGGGGTCAGAGGTCCGAGAGGAGGAAGTGGATCCACTGCTTTGAGAACGTCACCTCCATCATGTTTCTGGTGGCGCTCAGCGAGTACGACCAGGTCCTGGTGGAATCGGACAACGAGaatcGTATGGAGGAGAGTAAAGCTCTTTTCAGGACCATCATCACATATCCATGGTTCCAAAACTCCTCCGTCATCCTCTTCCTCAACAAGAAGGACCTGCTGGAGGAGAAGATCATGTATTCTCACCTGGTTGACTACTTTCCAGAGTTTGATGGCCCCCAGCGGGATGCCCAAGCAGGTCGGGAGTTCATCTTGAAGATGTTTGTGGACTTGAACCCAGACAGTGACAAGATCATCTACTCCCATTTCACATGCGCCACCGACACAGAGAACATCCGCTTCGTCTTTGCCGCCGTCAAAGACACCATCCTGCAGCTCAACCTCAAAGAATACAACCTGGTGTaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131820 lncRNA upstream 77597 23712097 ~ 23713463 (+) True G97679
TU131819 lncRNA upstream 77597 23713147 ~ 23713463 (+) False G97679
TU131792 lncRNA upstream 85776 23704936 ~ 23705284 (+) True G97657
TU131791 lncRNA upstream 140604 23648343 ~ 23650456 (+) False cdc34a
TU131789 lncRNA upstream 142861 23647873 ~ 23648199 (+) False cdc34a
TU131849 lncRNA downstream 167528 23998401 ~ 24000025 (+) False G97702
TU131850 lncRNA downstream 167528 23998401 ~ 24000222 (+) True G97702
TU131851 lncRNA downstream 167528 23998401 ~ 23999954 (+) False G97702
TU131884 lncRNA downstream 259670 24090543 ~ 24091319 (+) True G97728
TU131961 lncRNA downstream 373492 24204365 ~ 24208101 (+) False cks2
XM_039810215.1 mRNA upstream 124776 23659619 ~ 23666284 (+) True LOC120564946
XM_039810423.1 mRNA upstream 140547 23631119 ~ 23650513 (+) True cdc34a
XM_039810419.1 mRNA upstream 163313 23600317 ~ 23627747 (+) False ap3d1
XM_039811020.1 mRNA downstream 5797 23836670 ~ 23880166 (+) False tle5
XM_039811018.1 mRNA downstream 5800 23836673 ~ 23880166 (+) True tle5
XM_039811019.1 mRNA downstream 5800 23836673 ~ 23880166 (+) False tle5
XM_039810385.1 mRNA downstream 83075 23913948 ~ 23998384 (+) True tle2b
XM_039810382.1 mRNA downstream 83219 23914092 ~ 23998384 (+) False tle2b
TU131697 other upstream 313242 23474782 ~ 23477818 (+) True G97596
TU131620 other upstream 469151 23321522 ~ 23321909 (+) False pole4
XR_005640351.1 other upstream 1214858 22576129 ~ 22576202 (+) True LOC120566217
XR_005640354.1 other upstream 1215912 22575067 ~ 22575148 (+) True LOC120566220
XR_005640355.1 other upstream 1216136 22574843 ~ 22574924 (+) True LOC120566221
TU132257 other downstream 951045 24781918 ~ 24783881 (+) True G98012
TU132285 other downstream 1021428 24852301 ~ 24873874 (+) False elovl1b
TU132286 other downstream 1037144 24868017 ~ 24873874 (+) False elovl1b
TU132486 other downstream 1701952 25532825 ~ 25547089 (+) True G98194
TU132604 other downstream 1899385 25730258 ~ 25732177 (+) False slc35a3a

Expression Profile