RNA id: XM_039811207.1


Basic Information

Item Value
RNA id XM_039811207.1
length 440
RNA type mRNA
GC content 0.61
exon number 1
gene id LOC120565398
representative True

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4366122 ~ 4366561 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTACCGAGAGGAACCATGCCTGAACCAGCCAAGTCCGCCCCGAAGAAGGGCTCCAAGAAAGCCGTGACCAAGGCCGCCGGCAAGGGcgggaagaagaggagaaagagcaggaaggagagctacGCCATCTACGTGTACAAGGTGCTGAAGCAGGTGCACCCCGACACCGGCATCTCCTCCAAGGCCATGGGCATCATGAACTCGTTTGTGAGCGACATCTTTGAGCGCATCGCCGGCGAGGCGTCCCGTCTGGCTCACTACAACAAGCGCTCCACCATCACTTCTCGCGAGATCCAGACCGCCGTGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAACCGGCCCGCCGAGACCAAGACAACACAacggctcttttaagagccaca

Function

GO: NA

KEGG:

id description
K11252 H2B; histone H2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640233.1 lncRNA upstream 25524 4332961 ~ 4340598 (+) True LOC120565406
XR_005640232.1 lncRNA upstream 25524 4333311 ~ 4340598 (+) False LOC120565406
TU125694 lncRNA upstream 66364 4281451 ~ 4299758 (+) True G93170
TU125691 lncRNA upstream 82827 4282869 ~ 4283295 (+) True G93169
TU125686 lncRNA upstream 100757 4235824 ~ 4265365 (+) False LOC120565405
TU125836 lncRNA downstream 46700 4413261 ~ 4413921 (+) True G93281
TU125861 lncRNA downstream 93710 4460271 ~ 4465434 (+) True G93294
TU125859 lncRNA downstream 94568 4461129 ~ 4467311 (+) True G93293
TU125852 lncRNA downstream 129492 4496053 ~ 4502052 (+) True G93288
TU125841 lncRNA downstream 133988 4500549 ~ 4505974 (+) True G93286
XM_039811201.1 mRNA upstream 20993 4344659 ~ 4345129 (+) True LOC120565392
XM_039811194.1 mRNA upstream 52607 4301623 ~ 4313515 (+) False LOC120565391
XM_039810251.1 mRNA downstream 7265 4373826 ~ 4374754 (+) True LOC120564977
XM_039810180.1 mRNA downstream 42082 4408643 ~ 4419781 (+) True prpf38a
XM_039811596.1 mRNA downstream 72779 4439340 ~ 4443524 (+) False LOC120565669
XM_039811594.1 mRNA downstream 72779 4439340 ~ 4442204 (+) True LOC120565669
XM_039811598.1 mRNA downstream 148491 4515052 ~ 4519593 (+) False LOC120565674
TU125644 other upstream 68712 4284902 ~ 4297410 (+) True LOC120565391
XR_005640230.1 other upstream 72232 4290341 ~ 4293890 (+) False LOC120565391
TU125669 other upstream 148296 4196824 ~ 4217826 (+) True G93150
TU125177 other upstream 759297 3600978 ~ 3606825 (+) True G92848
TU125178 other upstream 772738 3592105 ~ 3593384 (+) False LOC120565459
TU125908 other downstream 345000 4711561 ~ 4713185 (+) False trmt1l
TU126315 other downstream 1668808 6035369 ~ 6040119 (+) False G93613
TU126347 other downstream 1835524 6202085 ~ 6214017 (+) True G93638
TU126420 other downstream 1988336 6354897 ~ 6368354 (+) False rhpn1
TU126750 other downstream 2983249 7349810 ~ 7350587 (+) True G93938

Expression Profile